View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_95 (Length: 234)
Name: NF1711_low_95
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_95 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 44881604 - 44881390
Alignment:
| Q |
8 |
tggagaataaataatcaaatgttgcttcttgctcatctgtacccaaaggaattcaatgcaattcaaattcagaagtctcttggagtatgtagccccacgg |
107 |
Q |
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| T |
44881604 |
tggagaataaataatcaaatgttgcttcttgctcatctgcacccaaaggaattcaatgcaattcaaattcagaagtctcttggagtatgtagccccacgg |
44881505 |
T |
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| Q |
108 |
ctacatccacattgccctcacatcggtaacatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataatgatgttgtatcttta |
207 |
Q |
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| T |
44881504 |
ctacatccacattgccctcacatcggtaacatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataatgatgttgtatcttga |
44881405 |
T |
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| Q |
208 |
gggagtgtgatttat |
222 |
Q |
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| T |
44881404 |
gggagtgtgatttat |
44881390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 22157606 - 22157714
Alignment:
| Q |
93 |
tatgtagccccacggctacatccacattgccctcacatcggtaacatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataat |
192 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||| ||||| || |
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| T |
22157606 |
tatgtagccccacggctacatccacatcgccctcacatcggtaatgtttgttatgttatttacttttttggttgcagttgtaattatggataatgatcat |
22157705 |
T |
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| Q |
193 |
gatgttgta |
201 |
Q |
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|||| |||| |
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| T |
22157706 |
gatggtgta |
22157714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 201
Target Start/End: Original strand, 22216314 - 22216422
Alignment:
| Q |
93 |
tatgtagccccacggctacatccacattgccctcacatcggtaacatttgttatgttatttacttttttggttgcaatggtgattatggatcatgataat |
192 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||| ||||| || |
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| T |
22216314 |
tatgtagccccacggctacatccacatcgccctcacatcggtaatgtttgttatgttatttacttttttggttgcagttgtaattatggataatgatcat |
22216413 |
T |
|
| Q |
193 |
gatgttgta |
201 |
Q |
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|||| |||| |
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| T |
22216414 |
gatggtgta |
22216422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 22157525 - 22157564
Alignment:
| Q |
8 |
tggagaataaataatcaaatgttgcttcttgctcatctgt |
47 |
Q |
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||||||||||| |||||| ||||||||||||||||||||| |
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| T |
22157525 |
tggagaataaacaatcaactgttgcttcttgctcatctgt |
22157564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 22216233 - 22216272
Alignment:
| Q |
8 |
tggagaataaataatcaaatgttgcttcttgctcatctgt |
47 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||||| |
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| T |
22216233 |
tggagaataaacaatcaactgttgcttcttgctcatctgt |
22216272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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