View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_96 (Length: 234)
Name: NF1711_low_96
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_96 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 18985077 - 18984879
Alignment:
| Q |
22 |
caagcttctggatcaatatctgacagtttcttttggtgcagacatttaggtaaaacaagagtggatgaaagtaggagcttgactttagactgcatcagac |
121 |
Q |
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| T |
18985077 |
caagcttctggatcaatatctgacagtttcttttggtgcagacatttaggtaaaacaagagtggatgaaagtaggagcttgactttagactgcatcagac |
18984978 |
T |
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| Q |
122 |
actctttgattaggcaggaagatagcataatattcaatcttttggagagagctcaatattcttataatgcagacacatatgacaaagcattcttctcag |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18984977 |
actctttgattaggcaggaagatagcataatattcaatcttttggagagagctcaatattcttataatgcagacacatatgacaaagcattcttctcag |
18984879 |
T |
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