View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1711_low_98 (Length: 232)
Name: NF1711_low_98
Description: NF1711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1711_low_98 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 54252597 - 54252377
Alignment:
| Q |
12 |
agatccaacaatgtttcatattttactgcagatttcttctatggcaaatgggtcttcttagattcttcttatgtcaaagatggggtactcaactaccgaa |
111 |
Q |
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| T |
54252597 |
agatccaacaatgtttcatattttactgcagatttcttctatggcaaatgggtcttcttagattcttcttatgtcaaagatggggtactcaactaccgaa |
54252498 |
T |
|
| Q |
112 |
tgtgtactcggnnnnnnnnnnnnnnnnnnnatgttgttgttttgctttttgattatcattatcatgttgttcttgtacgttgttggtgatattggctaca |
211 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
54252497 |
tgtgtacttggtcttcttcttcttcttcttatgttgttgttttgctttttgattatcattatgatgttattcttgtacgttgttggtgatattggctaca |
54252398 |
T |
|
| Q |
212 |
cggctcaatctgttagcttag |
232 |
Q |
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||||||||||||||||||||| |
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| T |
54252397 |
cggctcaatctgttagcttag |
54252377 |
T |
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