View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1722-Insertion-3 (Length: 252)

Name: NF1722-Insertion-3
Description: NF1722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1722-Insertion-3
NF1722-Insertion-3
[»] chr2 (24 HSPs)
chr2 (8-252)||(34330161-34330405)
chr2 (183-252)||(7278488-7278557)
chr2 (166-252)||(17663785-17663871)
chr2 (166-252)||(20362143-20362229)
chr2 (165-250)||(247823-247908)
chr2 (183-252)||(44424754-44424823)
chr2 (165-252)||(3237876-3237963)
chr2 (183-252)||(31644318-31644387)
chr2 (165-226)||(44421920-44421981)
chr2 (196-252)||(15851693-15851749)
chr2 (164-252)||(27749628-27749716)
chr2 (165-252)||(37355198-37355285)
chr2 (191-252)||(2048713-2048774)
chr2 (164-252)||(534626-534714)
chr2 (197-249)||(13534569-13534621)
chr2 (196-252)||(17250848-17250904)
chr2 (165-249)||(41665872-41665956)
chr2 (165-240)||(45150599-45150674)
chr2 (166-252)||(27297738-27297824)
chr2 (166-244)||(40345934-40346012)
chr2 (166-252)||(41327662-41327748)
chr2 (183-252)||(4398459-4398528)
chr2 (196-252)||(11071830-11071886)
chr2 (216-252)||(44274426-44274462)
[»] chr7 (23 HSPs)
chr7 (166-252)||(4089359-4089445)
chr7 (183-252)||(47458062-47458131)
chr7 (166-252)||(21759881-21759967)
chr7 (195-252)||(31365711-31365768)
chr7 (187-252)||(48610017-48610081)
chr7 (166-234)||(37491478-37491546)
chr7 (164-252)||(43465002-43465090)
chr7 (165-252)||(19235922-19236009)
chr7 (166-244)||(2276437-2276515)
chr7 (166-252)||(10685245-10685331)
chr7 (166-252)||(48767726-48767812)
chr7 (196-252)||(21388403-21388459)
chr7 (194-250)||(34118173-34118229)
chr7 (196-252)||(36726060-36726116)
chr7 (163-238)||(25750541-25750616)
chr7 (197-244)||(37673906-37673953)
chr7 (171-252)||(26633007-26633088)
chr7 (183-252)||(29723621-29723690)
chr7 (183-240)||(42983489-42983546)
chr7 (184-252)||(8318692-8318760)
chr7 (166-242)||(25098244-25098320)
chr7 (196-252)||(35128546-35128602)
chr7 (196-252)||(44648608-44648663)
[»] chr5 (19 HSPs)
chr5 (154-252)||(15898306-15898405)
chr5 (165-244)||(36177462-36177541)
chr5 (164-252)||(39690341-39690429)
chr5 (166-252)||(27925434-27925520)
chr5 (183-244)||(3630992-3631053)
chr5 (196-252)||(4857380-4857436)
chr5 (165-252)||(25690509-25690596)
chr5 (173-252)||(35568869-35568948)
chr5 (161-252)||(9946210-9946300)
chr5 (196-252)||(10934166-10934221)
chr5 (196-252)||(21912281-21912337)
chr5 (197-252)||(40979098-40979153)
chr5 (162-252)||(5845337-5845427)
chr5 (166-252)||(27642663-27642749)
chr5 (183-244)||(43060089-43060151)
chr5 (195-252)||(36347487-36347544)
chr5 (191-252)||(36750658-36750719)
chr5 (196-252)||(5151088-5151144)
chr5 (196-252)||(20975692-20975748)
[»] chr8 (32 HSPs)
chr8 (164-241)||(40517912-40517989)
chr8 (168-252)||(43191342-43191426)
chr8 (166-244)||(3005983-3006061)
chr8 (166-252)||(45183721-45183807)
chr8 (196-252)||(34158077-34158133)
chr8 (169-252)||(25198450-25198532)
chr8 (165-252)||(37956275-37956362)
chr8 (165-252)||(43980441-43980528)
chr8 (166-241)||(45283346-45283421)
chr8 (166-252)||(24962224-24962310)
chr8 (164-252)||(2562585-2562673)
chr8 (165-252)||(12763003-12763089)
chr8 (185-244)||(40790957-40791016)
chr8 (166-244)||(2303261-2303339)
chr8 (166-244)||(2327855-2327933)
chr8 (166-240)||(24512025-24512099)
chr8 (182-243)||(2031669-2031730)
chr8 (183-252)||(38202868-38202937)
chr8 (196-252)||(57077-57133)
chr8 (165-252)||(5191409-5191494)
chr8 (168-244)||(17933872-17933948)
chr8 (164-244)||(26878585-26878665)
chr8 (196-252)||(39543549-39543605)
chr8 (196-252)||(45185155-45185211)
chr8 (165-252)||(31252513-31252600)
chr8 (203-252)||(4395182-4395231)
chr8 (203-252)||(10860881-10860930)
chr8 (183-252)||(37141887-37141956)
chr8 (183-252)||(38761232-38761301)
chr8 (183-252)||(40601916-40601985)
chr8 (164-252)||(1177012-1177100)
chr8 (196-244)||(14739603-14739651)
[»] chr3 (22 HSPs)
chr3 (164-252)||(13084218-13084306)
chr3 (165-252)||(26517074-26517161)
chr3 (166-252)||(29645484-29645570)
chr3 (166-244)||(44083795-44083873)
chr3 (163-252)||(29349538-29349627)
chr3 (165-252)||(20945159-20945246)
chr3 (166-252)||(31530988-31531073)
chr3 (166-252)||(35145392-35145477)
chr3 (165-244)||(11345488-11345567)
chr3 (194-252)||(11140856-11140914)
chr3 (166-252)||(12077601-12077687)
chr3 (184-238)||(27637975-27638029)
chr3 (187-241)||(31474594-31474648)
chr3 (183-241)||(33411853-33411911)
chr3 (171-241)||(35765506-35765576)
chr3 (166-252)||(42891578-42891664)
chr3 (163-252)||(11388283-11388372)
chr3 (163-252)||(11396883-11396972)
chr3 (165-226)||(29676600-29676661)
chr3 (183-224)||(34055742-34055783)
chr3 (168-252)||(28477544-28477628)
chr3 (196-252)||(46048683-46048739)
[»] chr1 (22 HSPs)
chr1 (164-252)||(15512636-15512724)
chr1 (164-252)||(28948819-28948907)
chr1 (166-252)||(5084946-5085032)
chr1 (183-245)||(46732835-46732897)
chr1 (164-249)||(32715956-32716040)
chr1 (166-244)||(5321879-5321957)
chr1 (163-252)||(3831207-3831296)
chr1 (163-242)||(30898417-30898496)
chr1 (165-252)||(36085130-36085217)
chr1 (165-252)||(52141031-52141118)
chr1 (170-252)||(28334081-28334163)
chr1 (174-252)||(48721734-48721812)
chr1 (196-252)||(33232000-33232056)
chr1 (164-252)||(34012646-34012734)
chr1 (164-252)||(51390393-51390481)
chr1 (165-244)||(4817762-4817841)
chr1 (165-244)||(4829562-4829641)
chr1 (201-252)||(32047600-32047651)
chr1 (169-244)||(34696743-34696818)
chr1 (166-244)||(25063380-25063458)
chr1 (163-252)||(8877932-8878019)
chr1 (195-252)||(46495469-46495526)
[»] chr6 (9 HSPs)
chr6 (165-252)||(19839092-19839179)
chr6 (166-252)||(10260462-10260548)
chr6 (196-252)||(31945801-31945857)
chr6 (183-252)||(30465844-30465913)
chr6 (196-239)||(22410731-22410774)
chr6 (166-252)||(1763974-1764060)
chr6 (198-252)||(5457346-5457400)
chr6 (183-252)||(6791537-6791606)
chr6 (164-249)||(11303021-11303106)
[»] chr4 (30 HSPs)
chr4 (165-252)||(31936951-31937038)
chr4 (183-249)||(19654593-19654659)
chr4 (172-249)||(48472360-48472437)
chr4 (164-252)||(5168140-5168228)
chr4 (196-252)||(33246386-33246442)
chr4 (165-252)||(31486649-31486736)
chr4 (166-252)||(46729466-46729552)
chr4 (166-252)||(12624857-12624943)
chr4 (166-252)||(40411201-40411287)
chr4 (167-244)||(21171892-21171969)
chr4 (163-252)||(22750697-22750786)
chr4 (183-252)||(39196908-39196977)
chr4 (196-252)||(22651625-22651681)
chr4 (192-244)||(30050154-30050206)
chr4 (196-252)||(31917536-31917592)
chr4 (165-244)||(38136519-38136598)
chr4 (165-244)||(39237445-39237525)
chr4 (196-252)||(41945661-41945717)
chr4 (166-241)||(39813816-39813891)
chr4 (166-241)||(54438682-54438757)
chr4 (194-252)||(30153110-30153168)
chr4 (165-252)||(51918512-51918601)
chr4 (183-248)||(20291504-20291569)
chr4 (169-244)||(20792160-20792235)
chr4 (191-252)||(43509243-43509304)
chr4 (196-252)||(5536645-5536701)
chr4 (196-244)||(20185548-20185595)
chr4 (204-252)||(20262292-20262340)
chr4 (196-252)||(25477386-25477442)
chr4 (204-252)||(56216660-56216708)
[»] scaffold0121 (1 HSPs)
scaffold0121 (183-252)||(24220-24289)
[»] scaffold0036 (1 HSPs)
scaffold0036 (194-226)||(54987-55019)
[»] scaffold1091 (1 HSPs)
scaffold1091 (165-252)||(1770-1857)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 34330405 - 34330161
Alignment:
Q  8 aataaattaccaaaaactttggtgacataatgaattgaatgaacctcttaataattaatatcacttaattcaacgataaggatagggttctagtggggac 107  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34330405 aataaattaacaaagactttggtgacataatgaattgaatgaacctcttaataattaatatcacttaattcaacgataaggatagggttctagtgggaac 34330306  T
Q  108 tttgtagtccttcaaacaaagtgtggtccaaaacaatacatccatttctctttccttatactccctccgtcccggtatctaaacatctatttgattttat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||    
T  34330305 tttgtagtccttcaaacaaagtgtggtccaaaacaatacatccatttctctttccttatactccctccgtcactatatctaaacatctatttgattttat 34330206  T
Q  208 ttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| ||| |||||||||| || |||||||||||||| |||||||    
T  34330205 ttttgtctataaatgtaaactccttttcaaattactagatgcatt 34330161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 7278488 - 7278557
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  7278488 tatctaagcaccaatttgattttatttttatctctaaatgtaaatcccttttcaaattactagatgcatt 7278557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 17663871 - 17663785
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||| ||| || | |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  17663871 tactccctccgtccctatatgtaagcacccatttgattttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 17663785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 20362229 - 20362143
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||| ||| || | |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  20362229 tactccctccgtccctatatgtaagcacccatttgattttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 20362143  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 247908 - 247823
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgca 250  Q
    ||||||||||||||||  ||||||| || | |||||| |||| ||||||||||||||||||| || ||||||||||| || |||||    
T  247908 atactccctccgtccctatatctaagcacccatttgactttagttttatctctaaatgtaaactccttttcaaattagtagatgca 247823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 44424823 - 44424754
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| |||| |||||||||||||||| || |||||||||||  |||||||||||||||| |||||||    
T  44424823 tatctaagcatccatttgattttatttttgtccctaaatgtaaaccctttttcaaattactagatgcatt 44424754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 3237963 - 3237876
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| || ||||||  ||||||| |||| |||||||||||||||| || ||||||||||| || |||| ||||||||| |||||||    
T  3237963 atactctcttcgtccctatatctaagcatccatttgattttatttttgtccctaaatgtaaactcctttttaaattactagatgcatt 3237876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 31644318 - 31644387
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| || | |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  31644318 tatctaagcacccatttgattttatttttgtccctaaatgtaaactcattttcaaattactagatgcatt 31644387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 44421981 - 44421920
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaa 226  Q
    ||||||||||| ||||  ||||||| || |||||||||||||||||| ||||||||||||||    
T  44421981 atactccctccatccctatatctaagcacctatttgattttatttttgtctctaaatgtaaa 44421920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 15851749 - 15851693
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  15851749 atttgattttatttttctccctaaatgtaaactccttttcaaattactagatgcatt 15851693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 27749716 - 27749628
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| |||||||||   ||||||| || | |||||||||||||||| || ||||||||||| || |||||||||||| | |||||||    
T  27749716 tatacttcctccgtccttatatctaagcacccatttgattttatttttgtccctaaatgtaaactccttttcaaattacaagatgcatt 27749628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 37355285 - 37355198
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| || |||||  ||||||| || | |||||||||||||||| ||||||||| ||||  | |||||||||||||| |||||||    
T  37355285 atactccatctgtccctatatctaagcacccatttgattttatttttgtctctaaatataaaccccttttcaaattactagatgcatt 37355198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 2048713 - 2048774
Alignment:
Q  191 catctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| |||||||||||||||| | |||||||||||||  |||||||||||| || |||||||    
T  2048713 catccatttgattttatttttgtttctaaatgtaaatcttttttcaaattattagatgcatt 2048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 534714 - 534626
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||| |  ||| ||| |||| |||||||||||||||| ||  ||||||||||    |||||||||||||| |||||||    
T  534714 tatactccctccgtctctatatttaagcatccatttgattttatttttgtccttaaatgtaaacctcttttcaaattactagatgcatt 534626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 13534621 - 13534569
Alignment:
Q  197 tttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgc 249  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||||||| ||||    
T  13534621 tttgattttatttttttctctaaatttaaattccatttcaaattactagatgc 13534569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 17250848 - 17250904
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| ||||||||||| |||||||||||||| || |||| ||||||||| |||||||    
T  17250848 atttaattttatttttgtctctaaatgtaaactcctttttaaattactatatgcatt 17250904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 41665956 - 41665872
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgc 249  Q
    ||||| ||||||||||  ||||||| |  | |||||| ||||||||| || ||||||||||| ||| ||||||||||||| ||||    
T  41665956 atacttcctccgtccctatatctaagctcccatttgactttatttttgtccctaaatgtaaactctctttcaaattactagatgc 41665872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 45150599 - 45150674
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatt 240  Q
    ||||||||||||||||  ||| ||| ||   |||||||||||||||| || ||||||||||| || ||||||||||    
T  45150599 atactccctccgtccctatatttaatcactcatttgattttatttttgtccctaaatgtaaactccttttcaaatt 45150674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 27297824 - 27297738
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||| ||||  |||||||  | | |||||||||||||||| ||  |||||||||| || ||||||||||| || |||||||    
T  27297824 tactccctccatccctatatctaagtaccaatttgattttatttttgtccttaaatgtaaactccttttcaaattagtagatgcatt 27297738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 40345934 - 40346012
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    ||||| |||||||||  ||||||||||   |||| ||||||||||| |  ||||||||||| || ||||||||||||||    
T  40345934 tactctctccgtccctatatctaaacactcattttattttatttttgttcctaaatgtaaactccttttcaaattacta 40346012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 41327662 - 41327748
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||   ||||||| || | |||||| ||||||||| ||  |||||||||||   |||||||||||||| |||||||    
T  41327662 tactccctccgtccatatatctaagcacccatttgactttatttttgtccataaatgtaaatctcttttcaaattactagatgcatt 41327748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 4398459 - 4398528
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| |||  |||||| ||||||||| |  |||||||||||  |||||||||||||||| |||||||    
T  4398459 tatctaagcattcatttgactttatttttgttcctaaatgtaaaccctttttcaaattactagatgcatt 4398528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 11071886 - 11071830
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| ||||||||| || |||||| |||| || |||||||||||||| |||||||    
T  11071886 atttgactttatttttgtccctaaatctaaactccttttcaaattactagatgcatt 11071830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 44274426 - 44274462
Alignment:
Q  216 ctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||| | ||||||||||||||||||||||    
T  44274426 ctaaatgtaaatcccttttcaaattactaaatgcatt 44274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 4089359 - 4089445
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  |||||||||| | |||||||||||||||| || ||||||||||| ||||||| ||||||||| |||||||    
T  4089359 tactccctccgtccctatatctaaacacccatttgattttatttttgtccctaaatgtaaactctttttaaaattactagatgcatt 4089445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 47458062 - 47458131
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| ||||||||| ||||||||||| || |||||||||||||| |||| |||||||||||||||||    
T  47458062 tatctaatcatctatttaattttatttttgtccctaaatgtaaattcctttttaaattactaaatgcatt 47458131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 21759967 - 21759881
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||| |||  ||| |||||||||||| ||| || ||||||||||| ||| ||||||||||||| |||||||    
T  21759967 tactccctccgtccctatatgtaagaatccatttgattttatgtttgtccctaaatgtaaactctatttcaaattactagatgcatt 21759881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 31365711 - 31365768
Alignment:
Q  195 tatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||||| || |||||||    
T  31365711 tatttgattttatttttgtctgtaaatgtaaactctttttcaaattattagatgcatt 31365768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 48610017 - 48610081
Alignment:
Q  187 taaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| |||||||||||||||||||| ||| |||||||||| || |||||||||||||| |||||||    
T  48610017 taaatatctatttgattttatttttgtctttaaatgtaaa-tccttttcaaattactagatgcatt 48610081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 37491478 - 37491546
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattcttttt 234  Q
    ||||||||||||||   ||||||| ||||||||||| ||||||||||||  |||||||||| |||||||    
T  37491478 tactccctccgtccatatatctaagcatctatttgactttatttttatccttaaatgtaaactcttttt 37491546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 43465002 - 43465090
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||| |||||  ||||||| |  | |||||| ||||||||| ||| |||||||| | ||| |||||||||||||||||||||    
T  43465002 tatactccctctgtccctatatctaagctcccatttgactttatttttgtctttaaatgtacactctctttcaaattactaaatgcatt 43465090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 19235922 - 19236009
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||| ||||||||||  ||||||| ||   |||||| ||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  19235922 atacttcctccgtccctatatctaagcactcatttgactttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 19236009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 2276437 - 2276515
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||  ||| ||| || | |||||||||||||||| || ||||||||||||   ||||||||||||||    
T  2276437 tactccctccgtccctatatataagcacccatttgattttatttttgtccctaaatgtaaatcgcttttcaaattacta 2276515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 10685331 - 10685245
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||   ||||||| ||   |||||||||||||||| || |||||||||||  | |||||||||||||| |||||||    
T  10685331 tactccctccgtccttatatctaagcactcatttgattttatttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 10685245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 48767812 - 48767726
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||||||| |  | |||||||||||||||| || |||||||||||  |  ||||||||||||| |||||||    
T  48767812 tactccctccgtccctatatctaagcccccatttgattttatttttgtccctaaatgtaaaccccctttcaaattactagatgcatt 48767726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 21388459 - 21388403
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| ||||||||||||||  | ||| |||||||||| |||||||    
T  21388459 atttgattttatttttgtctctaaatgtaaacccctttccaaattactagatgcatt 21388403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 34118229 - 34118173
Alignment:
Q  194 ctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgca 250  Q
    |||||||| ||||||||| |||||||||||||| | ||||| ||||||||| |||||    
T  34118229 ctatttgactttatttttgtctctaaatgtaaacttttttttaaattactagatgca 34118173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 36726060 - 36726116
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| ||||||||||||||  |  ||||||||||||| |||||||    
T  36726060 atttgattttatttttgtctctaaatgtaaacccactttcaaattactagatgcatt 36726116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 25750616 - 25750541
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaa 238  Q
    |||||||| ||||||| |  ||||||| || | |||||| ||||||||| ||||||||| |||| |||||||||||    
T  25750616 ttatactcactccgtctctatatctaagcaccgatttgactttatttttgtctctaaatataaactctttttcaaa 25750541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 37673953 - 37673906
Alignment:
Q  197 tttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    ||||||||||||||| |||||||||||||| || |||| |||||||||    
T  37673953 tttgattttatttttgtctctaaatgtaaactcctttttaaattacta 37673906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 26633088 - 26633007
Alignment:
Q  171 cctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||  ||| ||| || | |||||||||||||||| || ||||||||| | |  |||||||||||||| |||||||    
T  26633088 cctccgtccctatatgtaagcacccatttgattttatttttgtccctaaatgtagacttcttttcaaattactagatgcatt 26633007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 29723690 - 29723621
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||  |||| ||||||||||| ||| ||||| ||||| | |||| ||||||||| |||||||    
T  29723690 tatctaaacattcatttaattttatttttgtctttaaatataaatccatttttaaattactagatgcatt 29723621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 42983489 - 42983546
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatt 240  Q
    ||||||| |||| |||||||||||||||| ||| ||||| |||| || ||||||||||    
T  42983489 tatctaagcatcaatttgattttatttttgtctttaaatataaactcattttcaaatt 42983546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 8318760 - 8318692
Alignment:
Q  184 atctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| |||| ||||||  |||||||| || |||||||||||  | |||||||||||||| |||||||    
T  8318760 atctaagcatccatttgacgttatttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 8318692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 25098244 - 25098320
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattac 242  Q
    |||||||||||||||  ||| ||| || |  |||| |||||||||| ||  ||||||||||| ||||||||||||||    
T  25098244 tactccctccgtccctatatgtaaccacccttttgtttttatttttgtccttaaatgtaaatcctttttcaaattac 25098320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 35128602 - 35128546
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || |||||||||||    |||||||||||||| |||||||    
T  35128602 atttgattttatttttgtccctaaatgtaaacctcttttcaaattactagatgcatt 35128546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 44648608 - 44648663
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| |  |||| ||||||||| |||||||| |||||||||||||    
T  44648608 atttgattttatttttgttcctaattgtaaattcattttcaaa-tactaaatgcatt 44648663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 15898306 - 15898405
Alignment:
Q  154 tctctttc-cttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||| |||||||||||||||||||  ||||||| ||||  ||||| ||||||||| || |||||| |||| ||||||||||||||||| |||||||    
T  15898306 tctctttcacttatactccctccgtccctatatctaagcatccgtttgactttatttttgtccctaaatataaactctttttcaaattactagatgcatt 15898405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 36177541 - 36177462
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||   ||||||| |||| |||||||||||||||| || |||||||||||||| ||||||||||||||    
T  36177541 atactccctccgtccatatatctaagcatccatttgattttatttttgtccctaaatgtaaattcattttcaaattacta 36177462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 39690341 - 39690429
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||||  ||| ||| || | |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  39690341 tatactccctccgtccctatatgtaagcacccatttgattttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 39690429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 27925520 - 27925434
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||| |||||||| |  | |||||| ||||||||| || |||||||||||| | |||||||||||||| |||||||    
T  27925520 tactccctccgtccctgtatctaagcccccatttgactttatttttgtccctaaatgtaaatcccttttcaaattactagatgcatt 27925434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 3630992 - 3631053
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||| ||||||||||||||||||   |||||||||| |||||||||||||||||    
T  3630992 tatctaaacatccatttgattttatttttattcttaaatgtaaactctttttcaaattacta 3631053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 4857380 - 4857436
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| ||||||||| |||||||||||||| || |||||||||||| |||||||||    
T  4857380 atttgactttatttttgtctctaaatgtaaactcattttcaaattaccaaatgcatt 4857436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 25690509 - 25690596
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||| ||||||  ||||||| || | |||||||||||||||| || |||||||||||  | ||||||| |||||| |||||||    
T  25690509 atactcccttcgtccctatatctaagcacccatttgattttatttttgtccctaaatgtaaaccccttttcaacttactagatgcatt 25690596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 35568869 - 35568948
Alignment:
Q  173 tccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||  ||||||| |||| |||| ||||||||||| || |||| ||||||  | ||||||||||||||||||||||    
T  35568869 tccgtccctatatctaagcatccatttaattttatttttgtccctaattgtaaaccccttttcaaattactaaatgcatt 35568948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 9946210 - 9946300
Alignment:
Q  161 ccttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattct-ttttcaaattactaaatgcatt 252  Q
    ||||||||||||| ||||||  ||||| |||| | |||||||||||||||| || |||||||| |||||| ||||||||||| || |||||||    
T  9946210 ccttatactcccttcgtccctatatcttaacacc-atttgattttatttttgtccctaaatgt-aattctcttttcaaattattagatgcatt 9946300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 10934221 - 10934166
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||| || |||||||    
T  10934221 atttgactttattttt-tctttaaatgtaaattctttttcaaattattagatgcatt 10934166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 21912337 - 21912281
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || ||||||||||| || |||||||||||| | |||||||    
T  21912337 atttgattttatttttgtccctaaatgtaaactccttttcaaattacaagatgcatt 21912281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 40979098 - 40979153
Alignment:
Q  197 tttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||||| |||||||||||  | |||||||||| ||| |||||||    
T  40979098 tttgattttatttttatccctaaatgtaaagcccttttcaaatttctagatgcatt 40979153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 5845427 - 5845337
Alignment:
Q  162 cttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||| |||||||||  |||| || | |  |||||| ||||||||| | ||||||||||||| || |||||||||| || |||||||    
T  5845427 cttatactctctccgtccctatatcgaagccttcatttgactttatttttgtttctaaatgtaaatcctctttcaaattattagatgcatt 5845337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 27642749 - 27642663
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||| ||| ||   |||||||||||||||| ||  ||||| |||| || |||||||||||||| |||||||    
T  27642749 tactccctccgtccctatatgtaagcactcatttgattttatttttgtccataaatataaactccttttcaaattactagatgcatt 27642663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 43060089 - 43060151
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgt-aaattctttttcaaattacta 244  Q
    ||||||| |||| |||||||||||||||| || |||||||| ||| || ||||||||||||||    
T  43060089 tatctaagcatccatttgattttatttttgtccctaaatgtaaaactccttttcaaattacta 43060151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 36347487 - 36347544
Alignment:
Q  195 tatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||| ||  ||||||||||||  ||||||||||| || |||||||    
T  36347487 tatttgattttatttttgtccataaatgtaaatttcttttcaaattattagatgcatt 36347544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 36750658 - 36750719
Alignment:
Q  191 catctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| |||||||||||||||| || |||||| ||||  | |||||||||||||| |||||||    
T  36750658 catccatttgattttatttttgtccctaaatataaacgccttttcaaattactagatgcatt 36750719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 5151088 - 5151144
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || ||||||||||| ||  ||| ||||||||| |||||||    
T  5151088 atttgattttatttttgtccctaaatgtaaactccctttgaaattactagatgcatt 5151144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 20975692 - 20975748
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| |   |||||||||| || |||||||||||||| |||||||    
T  20975692 atttgattttatttttgttcttaaatgtaaactccttttcaaattactagatgcatt 20975748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 40517989 - 40517912
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatta 241  Q
    |||||||||||||||||  |||||||||||| |||||| ||||||||| || ||||||||||| || |||||||||||    
T  40517989 tatactccctccgtccctatatctaaacatccatttgactttatttttgtccctaaatgtaaactccttttcaaatta 40517912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 43191342 - 43191426
Alignment:
Q  168 ctccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||   ||| ||| |||| |||||||||||||||| |||||||||||||| || |||||||||||||| |||||||    
T  43191342 ctccctccgtccttatatgtaagcatccatttgattttatttttgtctctaaatgtaaactccttttcaaattactagatgcatt 43191426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 3005983 - 3006061
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||||||| |||||| |||||||| ||||||||| |  ||||||||||||   ||||||||||||||    
T  3005983 tactccctccgtcccggtatgtaaacacctatttgactttatttttgttcctaaatgtaaatctcttttcaaattacta 3006061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 45183721 - 45183807
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||||||||||    ||||||||||||||| |||||||||||||| || |||| ||||||||| |||||||    
T  45183721 tactccctccgtccctatatctaaacacacgtttgattttatttttgtctctaaatgtaaactcctttttaaattactagatgcatt 45183807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 34158133 - 34158077
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||| |||||||    
T  34158133 atttgattttatttttgtccctaaatgtaaattcattttcaaattactatatgcatt 34158077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 25198532 - 25198450
Alignment:
Q  169 tccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||  ||||||| || |||||||| ||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  25198532 tccctccgtccctatatctaagcacctatttgactttatttttgtccctaaatgtaaactc-ttttcaaattactagatgcatt 25198450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 37956362 - 37956275
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| || ||||||  |||||||  |||||||||||||||||||| || |||||||||||  | |||| |||||||||||||||||    
T  37956362 atactcgcttcgtccctatatctaagtatctatttgattttatttttgtccctaaatgtaaacccctttttaaattactaaatgcatt 37956275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 43980441 - 43980528
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||  ||| ||| || | |||||||||||||||| ||  |||||||||| || |||||||||||||| |||||||    
T  43980441 atactccctccgtccctatatgtaagcacccatttgattttatttttgtccttaaatgtaaactccttttcaaattactagatgcatt 43980528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 45283346 - 45283421
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatta 241  Q
    ||||||||||||||   ||||||| ||| ||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  45283346 tactccctccgtccttatatctaagcatttatttgactttatttttgtccttaaatgtaaattctttttcaaatta 45283421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 24962224 - 24962310
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||| ||  |||| |||||||||||||||| ||  |||||||||| || |||||||||||||| |||||||    
T  24962224 tactccctccgtccctatatgtaggcatccatttgattttatttttgtccttaaatgtaaactccttttcaaattactagatgcatt 24962310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 2562585 - 2562673
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| |||||||| |  ||||||  |||| |||||||||||||||| | ||||||||||||||| |||| |||||| || |||||||    
T  2562585 tatacttcctccgtctctatatctatgcatccatttgattttatttttttttctaaatgtaaattcctttttaaattattagatgcatt 2562673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 12763089 - 12763003
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||   |||||||||||| |||||||||||||||| || |||||| ||||  | ||| |||||||||| |||||||    
T  12763089 atactccctccgtccttatatctaaacatccatttgattttatttttgtccctaaatctaaa-ccctttccaaattactagatgcatt 12763003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 40791016 - 40790957
Alignment:
Q  185 tctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||| | |||||||||||||||| || |||||||||| ||| ||||||||||||||    
T  40791016 tctaaacacccatttgattttatttttgtccctaaatgtaatttccttttcaaattacta 40790957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 2303339 - 2303261
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||  ||||||| || | |||||| ||||||||| || | ||||||||| || ||||||||||||||    
T  2303339 tactccctccgtccctatatctaagcaaccatttgaatttatttttgtcccgaaatgtaaactccttttcaaattacta 2303261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 2327933 - 2327855
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||  ||||||| || | |||||| ||||||||| || | ||||||||| || ||||||||||||||    
T  2327933 tactccctccgtccctatatctaagcaaccatttgaatttatttttgtcccgaaatgtaaactccttttcaaattacta 2327855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 24512025 - 24512099
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatt 240  Q
    ||||||||||||||   ||||||| ||   |||||||||||||||| || |||||||||||| ||||||||||||    
T  24512025 tactccctccgtccatatatctaagcactcatttgattttatttttgtccctaaatgtaaatcctttttcaaatt 24512099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 2031730 - 2031669
Alignment:
Q  182 gtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattact 243  Q
    |||||||| ||||||||||  ||||||||||||||||||||||   || |||||||||||||    
T  2031730 gtatctaagcatctatttgcctttatttttatctctaaatgtattctccttttcaaattact 2031669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 38202868 - 38202937
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||| | |||||||||||||||| |||||| || ||||  | |||||||||||||| |||||||    
T  38202868 tatctaaacacccatttgattttatttttgtctctacatataaaccccttttcaaattactagatgcatt 38202937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 57077 - 57133
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || |||||||||||  | |||||||||||||| |||||||    
T  57077 atttgattttatttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 57133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 5191409 - 5191494
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| ||||||||  ||||||| || |||||| ||||||||||| |  |||||||||||  | |||||||||||||| |||||||    
T  5191409 atactccatccgtccc--tatctaagcacctattttattttatttttgttcctaaatgtaaaccccttttcaaattactagatgcatt 5191494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 17933948 - 17933872
Alignment:
Q  168 ctccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    ||||||||||||   ||||||||||   |||||||||||||||| || |||||| || || ||||||||||||||||    
T  17933948 ctccctccgtccttatatctaaacactcatttgattttatttttgtccctaaatatacatcctttttcaaattacta 17933872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 26878585 - 26878665
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||||  ||| |||  | | |||||||||||||||| || ||||||||||| | ||||| |||||||||    
T  26878585 tatactccctccgtccctatatgtaacaacccatttgattttatttttgtccctaaatgtaaacttttttttaaattacta 26878665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 39543549 - 39543605
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| ||||||||| || |||||||||||  |||||||||||||||| |||||||    
T  39543549 atttgactttatttttgtccctaaatgtaaaccctttttcaaattactagatgcatt 39543605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 45185155 - 45185211
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| ||||||||| |||||||||||||| || |||||||||||||  |||||||    
T  45185155 atttgactttatttttgtctctaaatgtaaactcattttcaaattactggatgcatt 45185211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 31252513 - 31252600
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||| |||||   ||||||| |||| |||||||||||||||| |  |||||||||||    |||||||||||||| |||||||    
T  31252513 atactcccttcgtccttatatctaagcatccatttgattttatttttgttcctaaatgtaaacctcttttcaaattactagatgcatt 31252600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 4395182 - 4395231
Alignment:
Q  203 tttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||| || ||||||||||||||| | |||||||||||||| ||||    
T  4395182 tttatttttgtccctaaatgtaaattctctctcaaattactaaatacatt 4395231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 10860930 - 10860881
Alignment:
Q  203 tttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||| |||||||||||| | | |||||||||||| |||||||    
T  10860930 tttatttttatccctaaatgtaaatccatcttcaaattactagatgcatt 10860881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 37141956 - 37141887
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| || | |||||||||||||||| || |||| ||||||  |||||||| ||||||| |||||||    
T  37141956 tatctaagcaccgatttgattttatttttgtccctaattgtaaaccctttttcacattactagatgcatt 37141887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 38761232 - 38761301
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| |||  |||||||||||||||| || ||| |||||||  | |||||||||||||| |||||||    
T  38761232 tatctaagcattcatttgattttatttttgtccctatatgtaaaccccttttcaaattactagatgcatt 38761301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 40601916 - 40601985
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||| |||||| ||||||||| ||  ||||||||||    |||||||||||||| |||||||    
T  40601916 tatctaaacatccatttgactttatttttgtccttaaatgtaaacctcttttcaaattactagatgcatt 40601985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 1177012 - 1177100
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||||  ||| ||||||   |||| |||||| |||| ||||||||| ||||  | |||| ||||||||| |||||||    
T  1177012 tatactccctccgtccctatatgtaaacactcatttaattttacttttgtctctaaatataaacccctttttaaattactagatgcatt 1177100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 14739651 - 14739603
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||| ||||||||||||||||||| | |||  |||||||||    
T  14739651 atttgattttatctttatctctaaatgtaaatccctttctaaattacta 14739603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 13084218 - 13084306
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| ||||||||||||  |||||||||||| | |||||||||||||||||  |||| ||||| || |||||||||||||| |||||||    
T  13084218 tatattccctccgtccctatatctaaacatccaattgattttatttttatccttaaacgtaaactccttttcaaattactagatgcatt 13084306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 26517074 - 26517161
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||   ||||||| || | |||||||||||||||| || ||||||||||| |||||| |||||||||| |||||||    
T  26517074 atactccctccgtccatatatctaagcacccatttgattttatttttgtccctaaatgtaaactcttttacaaattactagatgcatt 26517161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 29645570 - 29645484
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||   ||||||| ||| ||||||||||||||||| || |||||||||||    |||||||||||||| |||||||    
T  29645570 tactccctccgtccttatatctaagcatttatttgattttatttttgtccctaaatgtaaaccacttttcaaattactagatgcatt 29645484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 44083873 - 44083795
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||  ||||||| |||| |||||| ||||||||| || |||||||||||  | ||||||||||||||    
T  44083873 tactccctccgtccctatatctaagcatccatttgactttatttttgtccctaaatgtaaacccattttcaaattacta 44083795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 29349627 - 29349538
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||| ||  ||||||||||   |||||| ||||||||| |  ||||||||||| || |||||||||||||| |||||||    
T  29349627 ttatactccctccgttcctatatctaaacactcatttgactttatttttgttcctaaatgtaaactcattttcaaattactagatgcatt 29349538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 20945159 - 20945246
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||| ||||||  ||||||| || | |||||| ||||||||| || |||||||||||  | |||||||||||||| |||||||    
T  20945159 atactcccttcgtccctatatctaagcacccatttgactttatttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 20945246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 31530988 - 31531073
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||||||| || | |||||| ||||||||  || ||||||||||| || |||||||||||||| |||||||    
T  31530988 tactccctccgtccctatatctaagcacccatttgactttattttg-tccctaaatgtaaactccttttcaaattactagatgcatt 31531073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 35145477 - 35145392
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||| ||| || | |||||||||||||||| || |||||| |||| || |||||||||||||| |||||||    
T  35145477 tactccctccgtccctatatataagcaaccatttgattttatttttgtccctaaatataaactc-ttttcaaattactagatgcatt 35145392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 11345567 - 11345488
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    ||||||||||||||||  ||||||| || | ||||||||||||||||  | |||||| ||||  | ||||||||||||||    
T  11345567 atactccctccgtccctatatctaagcacccatttgattttatttttgcccctaaatttaaaccccttttcaaattacta 11345488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 11140914 - 11140856
Alignment:
Q  194 ctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||||||| || ||||||||    |||||||||||||| |||||||    
T  11140914 ctatttgattttatttttatccctgaatgtaaacctcttttcaaattactagatgcatt 11140856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 12077601 - 12077687
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| ||||||||  ||||||| ||   |||||||||||||||| ||  ||||||||||  | |||||||||||||| |||||||    
T  12077601 tactccttccgtccctatatctaatcactcatttgattttatttttgtccttaaatgtaaaccccttttcaaattactagatgcatt 12077687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 27637975 - 27638029
Alignment:
Q  184 atctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaa 238  Q
    |||||| || |||||||||||| ||||| || |||||||||||||| ||||||||    
T  27637975 atctaagcacctatttgattttgtttttgtccctaaatgtaaattcattttcaaa 27638029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 31474648 - 31474594
Alignment:
Q  187 taaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatta 241  Q
    ||||||||||||||| ||||||||| ||||||||| |||| || |||| ||||||    
T  31474648 taaacatctatttgactttatttttgtctctaaatataaactcatttttaaatta 31474594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 33411853 - 33411911
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatta 241  Q
    |||||||  ||| ||||||||||||||||||   ||||||||||||| |||||||||||    
T  33411853 tatctaagtatccatttgattttatttttattcttaaatgtaaattcattttcaaatta 33411911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 35765506 - 35765576
Alignment:
Q  171 cctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatta 241  Q
    ||||||||||  ||||||||||  ||||||| ||||||||| ||||||||| |||  || |||||||||||    
T  35765506 cctccgtccctatatctaaacacttatttgactttatttttttctctaaatataatctcattttcaaatta 35765576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 42891664 - 42891578
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||  |||||| | |||||| ||||||||| || |||||||||||  | | |||||||||||| |||||||    
T  42891664 tactccctccgtccctatacgtaaacacccatttgactttatttttgtccctaaatgtaaacccctcttcaaattactagatgcatt 42891578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 11388372 - 11388283
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||| |||||   ||| |||||||||||||||||  |  ||| ||  ||||||||||  |||||||||||||||| |||||||    
T  11388372 ttatactcccttcgtccgtatatgtaaacatctatttgattaaaaatttgtccttaaatgtaaaccctttttcaaattactagatgcatt 11388283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 11396972 - 11396883
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||| |||||  ||| ||||||||||||||| |  |  ||||||  |||||||||| || ||||||||||| || |||||||    
T  11396972 ttatactccctctgtccctatatgtaaacatctatttgactaaaaatttatccttaaatgtaaactccttttcaaattattagatgcatt 11396883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 29676600 - 29676661
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaa 226  Q
    ||||||||||||||||  ||||||| ||   |||||||||||||||| || |||||||||||    
T  29676600 atactccctccgtccctatatctaagcactcatttgattttatttttgtccctaaatgtaaa 29676661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 34055742 - 34055783
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgta 224  Q
    ||||||| || |||||||||||||||||| ||||||||||||    
T  34055742 tatctaagcacctatttgattttatttttttctctaaatgta 34055783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 28477628 - 28477544
Alignment:
Q  168 ctccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||  ||||||| | || |||||| |||||||||  | |||||||||||    |||||||||||||| |||||||    
T  28477628 ctccctccgtccctatatctaagcctccatttgactttatttttgcccctaaatgtaaacctcttttcaaattactagatgcatt 28477544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 46048739 - 46048683
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || |||||||||||  | ||||||||||| || |||||||    
T  46048739 atttgattttatttttgtccctaaatgtaaaccccttttcaaattaatagatgcatt 46048683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 15512636 - 15512724
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||||  ||| ||| || | |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  15512636 tatactccctccgtccctatatgtaagcacccatttgattttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 15512724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 28948819 - 28948907
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||||  ||| ||| || | |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  28948819 tatactccctccgtccctatatgtaagcacccatttgattttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 28948907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 5084946 - 5085032
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||||||| || | |||||||||||||||| || |||||||||||  | |||||||||||||| |||||||    
T  5084946 tactccctccgtccctatatctaagcacccatttgattttatttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 5085032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 46732835 - 46732897
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaa 245  Q
    ||||||||||||||||||| ||||||||| || |||||||||||| |||||| ||||||||||    
T  46732835 tatctaaacatctatttgactttatttttgtccctaaatgtaaatccttttttaaattactaa 46732897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 32716040 - 32715956
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgc 249  Q
    |||||||||||||||||  ||||||| || | |||||||||||||||| ||||||||||||||  | |||||||||||||| ||||    
T  32716040 tatactccctccgtccctatatctaagcacccatttgattttatttttgtctctaaatgtaaa-cccttttcaaattactagatgc 32715956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 5321879 - 5321957
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||  | |||||||| | |||||||||||||||| || |||||||||||  | ||||||||||||||    
T  5321879 tactccctccgtccctatgtctaaacacccatttgattttatttttgtccctaaatgtaaaccccttttcaaattacta 5321957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 3831296 - 3831207
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||| ||  ||||||| |  | |||||||||||||||| || |||||||||||  | |||||||||||||| |||||||    
T  3831296 ttatactccctccgttcctatatctaagcgccaatttgattttatttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 3831207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 30898417 - 30898496
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattac 242  Q
    |||||||||||| |||||  |||||||  | |||||||||||||||||| |  |||||||||||  ||||||||||||||    
T  30898417 ttatactccctctgtccctatatctaagtacctatttgattttatttttgttcctaaatgtaaaccctttttcaaattac 30898496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 36085217 - 36085130
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| ||||||||  ||||||| ||   |||| ||||||||||| || ||||||||||||  ||||||||||||||| |||||||    
T  36085217 atactccttccgtccctatatctaagcactcatttaattttatttttgtccctaaatgtaaatcttttttcaaattactagatgcatt 36085130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 52141031 - 52141118
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| |||||||   ||| ||| |||| |||||||||||||||| || ||||||||||| || ||||||||| |||| |||||||    
T  52141031 atactccatccgtccatatatttaagcatccatttgattttatttttgtccctaaatgtaaactccttttcaaatcactagatgcatt 52141118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 28334081 - 28334163
Alignment:
Q  170 ccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||  ||| |||||| | ||||||||||| |||| || |||||||||||  | |||||||||||||| |||||||    
T  28334081 ccctccgtccctatatgtaaacacccatttgattttacttttgtccctaaatgtaaaccccttttcaaattactagatgcatt 28334163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 48721734 - 48721812
Alignment:
Q  174 ccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||  |||||||||| |||||||||||||||||| || ||||||||||     |||||||||||||| |||||||    
T  48721734 ccgtccctatatctaaacacctatttgattttatttttgtccctaaatgtaaccctcttttcaaattactagatgcatt 48721812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 33232056 - 33232000
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||| |||| || |||||| ||||||| |||||||||||||| |||||||    
T  33232056 atttgattttacttttgtccctaaatataaattcattttcaaattactagatgcatt 33232000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 34012734 - 34012646
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||| ||||||||| |  ||||||| ||  ||||||||||||||||| ||  |||||||||| | ||||| ||||||||| |||||||    
T  34012734 tatacaccctccgtctctatatctaagcacatatttgattttatttttgtcgttaaatgtaaacttttttttaaattactagatgcatt 34012646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 51390393 - 51390481
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||| ||||  |||||||||| | |||||| |||| |||| || |||||||||||  | |||| ||||||||| |||||||    
T  51390393 tatactccctccatccctatatctaaacacccatttgactttaattttgtccctaaatgtaaacccctttttaaattactagatgcatt 51390481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 4817762 - 4817841
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||| |  ||||||| || | |||||||||||||||| ||  |||||||||| || ||| ||||||||||    
T  4817762 atactccctccgtcactatatctaagcacccatttgattttatttttgtccttaaatgtaaactcatttccaaattacta 4817841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 4829562 - 4829641
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||| |  ||||||| || | |||||||||||||||| ||  |||||||||| || ||| ||||||||||    
T  4829562 atactccctccgtcactatatctaagcacccatttgattttatttttgtccttaaatgtaaactcatttccaaattacta 4829641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 32047651 - 32047600
Alignment:
Q  201 attttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||| |||||||||||  |||||||||||||||  |||||||    
T  32047651 attttatttttatccctaaatgtaaaccctttttcaaattacttgatgcatt 32047600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 34696743 - 34696818
Alignment:
Q  169 tccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    ||||||| ||||  ||||||| |||| |||||||||||||||| |  |||||||||||  | ||||||||||||||    
T  34696743 tccctccatccctatatctaagcatccatttgattttatttttgttcctaaatgtaaaccccttttcaaattacta 34696818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 25063458 - 25063380
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||| ||||  ||| ||| || | |||||||||||||||| ||  |||||||||| || ||||||||||||||    
T  25063458 tactccctccatccctatatgtaaccacccatttgattttatttttgtccttaaatgtaaactccttttcaaattacta 25063380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 8878019 - 8877932
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| ||||||||||  ||||||| || | |||||||||||||||  ||| |||||||||| |  |||||||||||||| |||||||    
T  8878019 ttatactacctccgtccctatatctaagcaccaatttgattttattttgttct-taaatgtaaact-attttcaaattactagatgcatt 8877932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 46495526 - 46495469
Alignment:
Q  195 tatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||| ||  ||||||||||| |||||| ||||||| | |||||||    
T  46495526 tatttgattttatttttgtccgtaaatgtaaatccttttttaaattacaagatgcatt 46495469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 19839179 - 19839092
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||  ||| ||| || | |||||||||||||||| || ||||||||||| || |||||||||||||| |||||||    
T  19839179 atactccctccgtccctatatgtaagcacccatttgattttatttttgtccctaaatgtaaactccttttcaaattactagatgcatt 19839092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 10260462 - 10260548
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||  |  ||| |||||| | |||||||||||||||| | | |||||||||||| ||||||||||||||| |||||||    
T  10260462 tactccctccgttgctatatttaaacacccatttgattttatttttgtttttaaatgtaaattttttttcaaattactagatgcatt 10260548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 31945801 - 31945857
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||| |||||||    
T  31945801 atttgattttatttttgtctctaaatgtaaacttcttttcaaattactagatgcatt 31945857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 30465844 - 30465913
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||||| ||||||||| |   |||||||||| |  |||||||||||||| |||||||    
T  30465844 tatctaaacatctatttgactttatttttgttcataaatgtaaacttcttttcaaattactagatgcatt 30465913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 22410731 - 22410774
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaat 239  Q
    |||||||||||||||| || |||||||||||| |||||||||||    
T  22410731 atttgattttatttttgtccctaaatgtaaatcctttttcaaat 22410774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 1764060 - 1763974
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||||||| ||   |||||||||||||||| ||||||||| ||||  | ||| ||||||| || |||||||    
T  1764060 tactccctccgtccctatatctaagcactcatttgattttatttttgtctctaaatataaacacctttccaaattattagatgcatt 1763974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 5457400 - 5457346
Alignment:
Q  198 ttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| ||||||||||||||||||| ||||| | ||||||||||| || |||||||    
T  5457400 ttgactttatttttatctctaaatataaatccattttcaaattattagatgcatt 5457346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 6791606 - 6791537
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| || | |||||||||||||||| ||| ||||||||||  | ||||||| |||||| |||||||    
T  6791606 tatctaagcacccatttgattttatttttgtctttaaatgtaaaccccttttcaacttactagatgcatt 6791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 11303106 - 11303021
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgc 249  Q
    |||||||||||||||||  |||||||  | | |||||||||||||||| ||  |||||||||| |  ||||||||| |||| ||||    
T  11303106 tatactccctccgtccctatatctaagaacccatttgattttatttttgtccttaaatgtaaacttcttttcaaataactagatgc 11303021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 31936951 - 31937038
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||| ||||||||||  ||||||| ||||||||| | ||||||||| || |||||||||||| | |||||||||||||| |||||||    
T  31936951 atacttcctccgtccctatatctaagcatctatttaactttatttttgtccctaaatgtaaatcccttttcaaattactagatgcatt 31937038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 19654659 - 19654593
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgc 249  Q
    ||||||| |||| ||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||    
T  19654659 tatctaagcatccatttgattttattttcatccctaaatgtaaactctttttcaaattattaaatgc 19654593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 48472360 - 48472437
Alignment:
Q  172 ctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgc 249  Q
    |||| |||| ||||||||||| | |||||||||||||||| ||| |||||||||| | |||||||||||| |||||||    
T  48472360 ctccctccctgtatctaaacacccatttgattttatttttgtctttaaatgtaaactttttttcaaattaataaatgc 48472437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 5168228 - 5168140
Alignment:
Q  164 tatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||| ||||||||||  ||||||| || | |||||||||||||||| ||||||||||||||  | |||||| ||||||| |||||||    
T  5168228 tatacttcctccgtccctatatctaagcaccaatttgattttatttttgtctctaaatgtaaacccgttttcatattactagatgcatt 5168140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 33246386 - 33246442
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||    
T  33246386 atttgattttatttttgtccctaaatgtaaactctttttcaaattactagatgcatt 33246442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 252
Target Start/End: Complemental strand, 31486736 - 31486649
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||| |||  ||||||||||  ||||||| ||||||||| ||| ||||||||||  | ||||||||||||||||| ||||    
T  31486736 atactccctccggccctatatctaaacacatatttgactttatttttgtctttaaatgtaaaccccttttcaaattactaaattcatt 31486649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 46729552 - 46729466
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaat-tctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  |||||||||| | |||||||||||||||| || |||||||||||| ||||||| |||||| || |||||||    
T  46729552 tactccctccgtccctatatctaaacacccatttgattttatttttgtccctaaatgtaaatctcttttt-aaattattagatgcatt 46729466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 12624943 - 12624857
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||  ||| ||| || | |||||||||||||||| ||  |||||||||| || |||||||||||||| |||||||    
T  12624943 tactccctccgtccctatatgtaagcacccatttgattttatttttgtccttaaatgtaaactccttttcaaattactagatgcatt 12624857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 40411201 - 40411287
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||   ||| ||| |||| |||||||||||||||| || |||| |||||| || |||||||||||||| |||||||    
T  40411201 tactccctccgtccatatatttaagcatccatttgattttatttttgtccctaattgtaaactccttttcaaattactagatgcatt 40411287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 21171969 - 21171892
Alignment:
Q  167 actccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    ||||||||||||||  ||| ||| || |||||||||||||||| | |||||||||||||| |  ||||||||||||||    
T  21171969 actccctccgtccctatatgtaaccacctatttgattttatttatgtctctaaatgtaaacttcttttcaaattacta 21171892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 22750697 - 22750786
Alignment:
Q  163 ttatactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||||||  ||| ||| || | |||||||||||||||| |  |||||| ||||| ||||||||||||| || |||||||    
T  22750697 ttatactccctccgtccctatatgtaaccaccaatttgattttatttttgttcctaaatctaaatcctttttcaaattagtagatgcatt 22750786  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 39196908 - 39196977
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||| || | |||||| ||||||||| || ||||||||||||| ||||||||||||||| |||||||    
T  39196908 tatctaagcacccatttgactttatttttgtccctaaatgtaaattatttttcaaattactagatgcatt 39196977  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 22651681 - 22651625
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||||||  |||||||||| || |||||||||||||| |||||||    
T  22651681 atttgattttatttttatccttaaatgtaaactccttttcaaattactagatgcatt 22651625  T

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Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 30050206 - 30050154
Alignment:
Q  192 atctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    ||||||||||||||||||||||   |||||||||||||||||| |||||||||    
T  30050206 atctatttgattttatttttattcttaaatgtaaattcttttttaaattacta 30050154  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 31917592 - 31917536
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||||||  ||||||||||  |||||||||||||||| |||||||    
T  31917592 atttgattttatttttatccttaaatgtaaaccctttttcaaattactagatgcatt 31917536  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 38136598 - 38136519
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||| |  ||| ||| |||| |||||| ||||||||||||  |||||||||| || ||||||||||||||    
T  38136598 atactccctccgtctctatatttaagcatccatttgactttatttttatccataaatgtaaactccttttcaaattacta 38136519  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 39237445 - 39237525
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattc-tttttcaaattacta 244  Q
    |||||||||||||||  |||||||| |||  |||||||||||||| | ||||||||| ||||  | |||||||||||||||    
T  39237445 atactccctccgtccatgtatctaagcattcatttgattttatttctgtctctaaatataaaaccttttttcaaattacta 39237525  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 41945661 - 41945717
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| ||||||||||| || |||||||||||| | |||||||||||||| |||||||    
T  41945661 attttattttatttttgtccctaaatgtaaatcccttttcaaattactatatgcatt 41945717  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 39813816 - 39813891
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatta 241  Q
    |||||||||||| |   ||| ||| |||| |||||||||||||||| || ||||||||||| || |||||||||||    
T  39813816 tactccctccgttcttatatgtaaccatccatttgattttatttttgtccctaaatgtaaactccttttcaaatta 39813891  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 54438757 - 54438682
Alignment:
Q  166 tactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaatta 241  Q
    ||||||||||||| |  ||||||| |||| |||| ||||||||||| || ||||||||||||   |||||||||||    
T  54438757 tactccctccgtctctatatctaagcatccattttattttatttttgtccctaaatgtaaatctcttttcaaatta 54438682  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 30153110 - 30153168
Alignment:
Q  194 ctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||| ||||||||| ||||||||||||||| | |||| |||||| || |||||||    
T  30153110 ctatttgactttatttttgtctctaaatgtaaatccatttttaaattattagatgcatt 30153168  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 51918512 - 51918601
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaa--attctttttcaaattactaaatgcatt 252  Q
    ||||||||||||||    ||||||| || | |||||||||||||||| || ||||||||||  || | |||||||||||||| |||||||    
T  51918512 atactccctccgtctttatatctaagcacccatttgattttatttttgtccctaaatgtaattatcccttttcaaattactagatgcatt 51918601  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 20291569 - 20291504
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatg 248  Q
    |||||||||||| |||| | ||||||||| ||| ||||| |||||   ||||||||||||||||||    
T  20291569 tatctaaacatccatttaactttatttttgtctttaaatataaatctcttttcaaattactaaatg 20291504  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 20792235 - 20792160
Alignment:
Q  169 tccctccgtcccggtatctaaacatctatttgattttattttt-atctctaaatgtaaat-tctttttcaaattacta 244  Q
    ||||||||||||  |||||||||| | |||||||||||||||| ||| |||||||||||| ||||||| |||||||||    
T  20792235 tccctccgtccctatatctaaacacccatttgattttatttttgatc-ctaaatgtaaatctcttttt-aaattacta 20792160  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 43509304 - 43509243
Alignment:
Q  191 catctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||| |||||| ||||||||| || ||||||||||| || ||||||||||| || |||||||    
T  43509304 catccatttgactttatttttgtccctaaatgtaaactccttttcaaattattagatgcatt 43509243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 5536701 - 5536645
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || |||||||||||    |||||||||||||| |||||||    
T  5536701 atttgattttatttttgtccctaaatgtaaacctcttttcaaattactagatgcatt 5536645  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 20185548 - 20185595
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattacta 244  Q
    |||||||||||||||| | |||||||||||| ||||||| |||||||||    
T  20185548 atttgattttatttttttttctaaatgtaaactcttttt-aaattacta 20185595  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 20262292 - 20262340
Alignment:
Q  204 ttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||| || |||||||||||  | ||||||||||||||||||||||    
T  20262292 ttatttttgtccctaaatgtaaacccattttcaaattactaaatgcatt 20262340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 25477442 - 25477386
Alignment:
Q  196 atttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||||||| || ||||||||| | |  |||||||||||||| |||||||    
T  25477442 atttgattttatttttgtccctaaatgtatacttattttcaaattactagatgcatt 25477386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 56216660 - 56216708
Alignment:
Q  204 ttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||||  ||||||||||||  |||||||||||||| |||||||    
T  56216660 ttatttttatccttaaatgtaaatttcttttcaaattactagatgcatt 56216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 24289 - 24220
Alignment:
Q  183 tatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    |||||||||  |||||||||||||||||| || ||||||||||||  | ||||||||||||| |||||||    
T  24289 tatctaaactcctatttgattttatttttgtccctaaatgtaaatcttctttcaaattactagatgcatt 24220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 55019 - 54987
Alignment:
Q  194 ctatttgattttatttttatctctaaatgtaaa 226  Q
    |||||||||||||||||||||||||||||||||    
T  55019 ctatttgattttatttttatctctaaatgtaaa 54987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1091 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 252
Target Start/End: Original strand, 1770 - 1857
Alignment:
Q  165 atactccctccgtcccggtatctaaacatctatttgattttatttttatctctaaatgtaaattctttttcaaattactaaatgcatt 252  Q
    ||||||||||| ||||  ||||||| || | |||||| ||||||||| || || ||||||||  | |||||||||||||| |||||||    
T  1770 atactccctccatccctatatctaagcacccatttgactttatttttgtccctcaatgtaaaccccttttcaaattactagatgcatt 1857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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