View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1722-Insertion-5 (Length: 903)

Name: NF1722-Insertion-5
Description: NF1722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1722-Insertion-5
NF1722-Insertion-5
[»] chr8 (2 HSPs)
chr8 (702-876)||(17112164-17112340)
chr8 (585-701)||(17112003-17112120)
[»] chr7 (15 HSPs)
chr7 (53-147)||(3674724-3674818)
chr7 (702-898)||(3702149-3702330)
chr7 (18-135)||(3693067-3693180)
chr7 (54-152)||(3685374-3685472)
chr7 (54-147)||(3678918-3679011)
chr7 (54-147)||(3694847-3694940)
chr7 (56-145)||(3654258-3654347)
chr7 (564-636)||(3702365-3702437)
chr7 (7-152)||(3705758-3705899)
chr7 (78-140)||(3700570-3700632)
chr7 (85-155)||(3702836-3702906)
chr7 (418-531)||(3702466-3702583)
chr7 (57-136)||(3651607-3651686)
chr7 (83-143)||(3700401-3700461)
chr7 (87-136)||(3683896-3683945)
[»] chr5 (1 HSPs)
chr5 (702-752)||(28668548-28668598)
[»] chr1 (1 HSPs)
chr1 (702-757)||(14783750-14783805)
[»] chr4 (3 HSPs)
chr4 (718-780)||(17257769-17257831)
chr4 (702-779)||(16176108-16176185)
chr4 (702-758)||(36471330-36471386)
[»] chr3 (1 HSPs)
chr3 (702-758)||(23646931-23646987)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 702 - 876
Target Start/End: Original strand, 17112164 - 17112340
Alignment:
Q  702 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagatttcatggtaaaaaggtgtctgtg 801  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||| ||||    
T  17112164 caagagcaacc-gaaaaagaataaaggctatcaaacccgttccaagggtccattaccaacttcgcctcaatgaagatttcatggtaaaaaggtgtatgtg 17112262  T
Q  802 gcagctatttttgcgcatatcttgtatcttg---agcggcatctttgggctgagctaaccatcttcacactgttcaga 876  Q
    | |||||||| |||||||| |||||||||||   |||| |  ||||||| ||| ||||||||||||||| ||||||||    
T  17112263 gtagctatttatgcgcataacttgtatcttgatcagcgtcgactttgggttgatctaaccatcttcacattgttcaga 17112340  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 585 - 701
Target Start/End: Original strand, 17112003 - 17112120
Alignment:
Q  585 gcagcaagcaactctactgtcaaacattccgatcagc---acccttttgcaagtgttattccgcaccgctgtcctttgattacttacagattttggagat 681  Q
    |||||| | |||||||||| |||||||||||||||||   ||||||||||||  ||||||||||||||||||||||||||||| || ||| |||||||||    
T  17112003 gcagcaggaaactctactgccaaacattccgatcagcagcacccttttgcaaaagttattccgcaccgctgtcctttgattac-taaaga-tttggagat 17112100  T
Q  682 catacaacagaccctagttg 701  Q
    |||||||||| |||| ||||    
T  17112101 catacaacaggccctggttg 17112120  T

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Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 3674818 - 3674724
Alignment:
Q  53 tagtggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagctacgagc 147  Q
    |||||||||||||| |||||||||| |||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  3674818 tagtggttgaaagaggtatttcatatatagaagtcccacatcgaaggttgaataaagcatcacaacacatggtgcatataaaaagagctacgagc 3674724  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 702 - 898
Target Start/End: Complemental strand, 3702330 - 3702149
Alignment:
Q  702 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagatttcatggtaaaaaggtgtctgtg 801  Q
    ||||||||||| ||||||| |||||| |||| ||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||       |||||    
T  3702330 caagagcaaccggaaaaaggataaagactat-aaacccgttccaagggtctgttaccaacttcgtctcaatgaagatttcatggtaaa-------ctgtg 3702239  T
Q  802 gcagctatttttgcgcatatcttgtatcttgagcggcatctttgggctgagctaaccatcttcacactgttcagatacggtttggtggaaatttatg 898  Q
    |||||||||||||| ||       |||||||| || ||||||| || ||| |||| ||| || |||||||||| | |||||||||||| ||||||||    
T  3702238 gcagctatttttgcaca-------tatcttgatcgacatctttaggttgatctaatcatgtttacactgttcaaacacggtttggtgggaatttatg 3702149  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 3693180 - 3693067
Alignment:
Q  18 tgaccgagtgagaggataagaacaatggaagcagttagtggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaataaagcatcacaa 117  Q
    |||||||||||||||| ||||| ||||||||     ||||||||||||| |||||||||| ||| || ||||||||| || ||||||| |||||||||||    
T  3693180 tgaccgagtgagaggagaagaagaatggaag----gagtggttgaaagaggtatttcatatatatgaatcccacatcaaaggttcaatgaagcatcacaa 3693085  T
Q  118 catatggtgcatataaaa 135  Q
    || |||||||||||||||    
T  3693084 cacatggtgcatataaaa 3693067  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 3685472 - 3685374
Alignment:
Q  54 agtggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagctacgagcgtgtt 152  Q
    ||||||||||||| || || |||| |||| |||||||||||||| ||||||| |||||| |||||| ||||||||||||||| ||||||||||| ||||    
T  3685472 agtggttgaaagaggtgttccatatatagaagtcccacatcgaaggttcaatgaagcattacaacacatggtgcatataaaacgagctacgagcttgtt 3685374  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 3679011 - 3678918
Alignment:
Q  54 agtggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagctacgagc 147  Q
    ||||||||||||| |||||||||| |||| |||||||||||||| ||||| | |||||| ||| || ||||||||||||||| |||||||||||    
T  3679011 agtggttgaaagaggtatttcatatatagaagtcccacatcgaaggttcagtgaagcattacagcacatggtgcatataaaatgagctacgagc 3678918  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 3694940 - 3694847
Alignment:
Q  54 agtggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagctacgagc 147  Q
    |||||||||||||  ||||||||| |||| |||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| ||||| |||||    
T  3694940 agtggttgaaagagttatttcatatatagaagtcccacatcgaaggttcaatgaagcatcacaacacatgttgcatataaaatgagctgcgagc 3694847  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 3654258 - 3654347
Alignment:
Q  56 tggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagctacga 145  Q
    ||||||||||| |||||||||| ||| || |||||||||||| ||||| | ||||||||||||| |||||||||||||||| || |||||    
T  3654258 tggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcattgaagcatcacaacacatggtgcatataaaaaaagttacga 3654347  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 564 - 636
Target Start/End: Complemental strand, 3702437 - 3702365
Alignment:
Q  564 ataattatgttttgaagttgcg-cagcaagcaactctactgtcaaacattccgatcagcacccttttgcaagtg 636  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||| |||||||||||||||    
T  3702437 ataattatgttttgaagttgcggcagca-gcaactctactgtcaaatattcagatcagtacccttttgcaagtg 3702365  T

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Target: chr7; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 3705899 - 3705758
Alignment:
Q  7 aggaccaagactgaccgagtgagaggataagaacaatggaagcagttagtggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaata 106  Q
    |||||||||| |||| ||||||||||| |||||||||||||||    ||||||||||| |  || ||||||||| |||||||||||||||| |||  ||     
T  3705899 aggaccaagaatgactgagtgagaggagaagaacaatggaagc----agtggttgaaatagctacttcatagatgggagtcccacatcgaaggtt-gatg 3705805  T
Q  107 aagcatcacaacatatggtgca-tataaaaagagctacgagcgtgtt 152  Q
    || |||||||||| ||| |||| |||| ||||||| |||||| ||||    
T  3705804 aaccatcacaacacatgatgcattatataaagagcaacgagcttgtt 3705758  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 3700632 - 3700570
Alignment:
Q  78 gataggagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagc 140  Q
    ||||| ||||||||||||| |||||||| ||||||||||||| ||| ||| ||||||||||||    
T  3700632 gatagtagtcccacatcgacagttcaatgaagcatcacaacacatgctgcgtataaaaagagc 3700570  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 3702906 - 3702836
Alignment:
Q  85 gtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagctacgagcgtgttaat 155  Q
    ||||||||||||| ||||||| ||||  |||  || ||||||||||||||||||||||||||| |||||||    
T  3702906 gtcccacatcgaaggttcaatgaagctccacggcaaatggtgcatataaaaagagctacgagcttgttaat 3702836  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 418 - 531
Target Start/End: Complemental strand, 3702583 - 3702466
Alignment:
Q  418 aaatgtttaattttaaataatgtctaaaatctattagaactatacaattatgttttaaaattctatcaatttaaaaatt----ata-ttttaatagattt 512  Q
    ||||||| |||||| |||||||||||||||| |||| || || | |||| ||||| |||||||||||||||||| ||||    ||| | ||  |||||||    
T  3702583 aaatgttgaattttgaataatgtctaaaatc-attaaaaataaataattgtgtttgaaaattctatcaatttaataatttttcatagtatttttagattt 3702485  T
Q  513 catcaacatcaattctaac 531  Q
    |||||||||||||||||||    
T  3702484 catcaacatcaattctaac 3702466  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 3651607 - 3651686
Alignment:
Q  57 ggttgaaagatgtatttcatagataggagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaa 136  Q
    ||||||||||  ||||||||| |||||||||||| || |||  |||||| ||||| ||||||| ||| ||||||||||||    
T  3651607 ggttgaaagaactatttcatatataggagtcccatattgaagtttcaatgaagcaccacaacacatgctgcatataaaaa 3651686  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 3700461 - 3700401
Alignment:
Q  83 gagtcccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaagagctac 143  Q
    ||||||||||||||| ||||||||||| | |||||||  || |||||||||| ||||||||    
T  3700461 gagtcccacatcgaaggttcaataaagaaccacaacacgtgctgcatataaagagagctac 3700401  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 3683945 - 3683896
Alignment:
Q  87 cccacatcgaaagttcaataaagcatcacaacatatggtgcatataaaaa 136  Q
    ||||||||||| ||||||| |||||||||| |  ||||||||||||||||    
T  3683945 cccacatcgaaggttcaatgaagcatcacagctcatggtgcatataaaaa 3683896  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 702 - 752
Target Start/End: Original strand, 28668548 - 28668598
Alignment:
Q  702 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtcc 752  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  28668548 caagagcaaccggaaaaagaataaaggctatcaaacccgctcgaagggtcc 28668598  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 702 - 757
Target Start/End: Original strand, 14783750 - 14783805
Alignment:
Q  702 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttac 757  Q
    ||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||||    
T  14783750 caagagcaaccagaataagaaaaaaggttattaaacccgctccaagggtccgttac 14783805  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 718 - 780
Target Start/End: Original strand, 17257769 - 17257831
Alignment:
Q  718 aagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagattt 780  Q
    ||||| ||| |||||||||||||||||| |||||||||| | |||||||  ||||||||||||    
T  17257769 aagaagaaatgctatcaaacccgctccaggggtccgttatcaacttcgtcccaatgaagattt 17257831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 702 - 779
Target Start/End: Complemental strand, 16176185 - 16176108
Alignment:
Q  702 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacctacttcgtatcaatgaagatt 779  Q
    ||||||||||| ||| ||||||||| | |||||||||||||||  |||||||||||| | | ||| || |||||||||    
T  16176185 caagagcaaccggaagaagaataaaagttatcaaacccgctcccggggtccgttaccaaatccgtctctatgaagatt 16176108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 758
Target Start/End: Original strand, 36471330 - 36471386
Alignment:
Q  702 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacc 758  Q
    |||| |||||||||| ||| | ||| | |||||||||||||||||||||||||||||    
T  36471330 caagcgcaaccagaagaagcaaaaatgttatcaaacccgctccaagggtccgttacc 36471386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 758
Target Start/End: Original strand, 23646931 - 23646987
Alignment:
Q  702 caagagcaaccagaaaaagaataaaggctatcaaacccgctccaagggtccgttacc 758  Q
    ||||||||||| ||| ||| | ||||| ||||||||||| |||||||||||||||||    
T  23646931 caagagcaaccggaagaagcaaaaaggttatcaaacccgatccaagggtccgttacc 23646987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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