View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1722-Insertion-6 (Length: 302)
Name: NF1722-Insertion-6
Description: NF1722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1722-Insertion-6 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 302
Target Start/End: Original strand, 2044762 - 2045052
Alignment:
| Q |
7 |
attgagtatgttttctttcaatttgtaggagtggcttttggggctggagcttctatggtagacggggctgtggatgctgtgtttggtcctcgaactattc |
106 |
Q |
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| T |
2044762 |
attgagtatgttttctttcaatttgtaggagtggcttttggggctgga-cttctatggtagacagggctgtggatgctgtgttttgtcctcgaactattc |
2044860 |
T |
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| Q |
107 |
gaaatgaaaaagttgttactggatct------cctgcacccgcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggc |
200 |
Q |
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| T |
2044861 |
gaaatgaaaaagttgttactggatctcctgcacctgcacccgcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggc |
2044960 |
T |
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| Q |
201 |
tttcctagatgtatgttgtttannnnnnncatatgattttactctcttacgttgtatgttgttgaaaataatatagtttgttcaaatttgactacgcaat |
300 |
Q |
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| T |
2044961 |
tttcctagatgtatgtt-ttttttttattcatatgattttactctct-------tatgttgttgaaaata--atagtttgttcaaatttgactacgcaat |
2045050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 2041651 - 2041730
Alignment:
| Q |
142 |
gcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggctttcctagatgtatgttgttt |
221 |
Q |
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| T |
2041651 |
gcacctgcacccaatactcaaagtcttggtagcgatgcatgcaatattcactcaaaggctttccttgatgtaagttgttt |
2041730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 2041492 - 2041600
Alignment:
| Q |
7 |
attgagtatgttttctttcaatttgtaggagtggcttttggggctggagcttctatggtagacggggctgtggatgctgtgtttggtcctcgaactattc |
106 |
Q |
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| T |
2041492 |
attgagtttgtttactttcaatttgtaggagtggctttttggactgaagtttctgttgcacgcagggctgtggatgctgtatttggccctccaactattc |
2041591 |
T |
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| Q |
107 |
gaaatgaaa |
115 |
Q |
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| T |
2041592 |
gaagtgaaa |
2041600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 37032748 - 37032702
Alignment:
| Q |
175 |
gatgcatgcgatattcactcaaaggctttcctagatgtatgttgttt |
221 |
Q |
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| T |
37032748 |
gatgcatgcaatattcattcaaaggcattccaagatgtatgttgttt |
37032702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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