View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1722_high_3 (Length: 314)
Name: NF1722_high_3
Description: NF1722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1722_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 2324038 - 2323757
Alignment:
| Q |
18 |
ctaatcctataatagtggttgtgtcacatcagcaaaaaa--gctacaaaaatgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaaca |
115 |
Q |
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| T |
2324038 |
ctaatcctataatagtcgttgtgtcacatcagtaaaaaaaagctacaaaaatgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaaca |
2323939 |
T |
|
| Q |
116 |
tccattttttatgcttttaattttcgctcgagctagaaaaatttcttaaagatggcgagcgaaatacaaccaattgaaccaaattgtatttgttaataga |
215 |
Q |
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| T |
2323938 |
ttcattttttatgcttttaattttcgctcgagctagaaaaatttcttaaaggtggcgagcgaaatacaacca----------attgtatttgttaataga |
2323849 |
T |
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| Q |
216 |
atccactagctatagcataaagggttttcatgtccaattgcat-gttttttaatccatcttaatcaagtctctttgtttaaagcagtattat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323848 |
atccactagctatagcataaagggttttcatgtccaattgcatagttttttaatccatcttaatcaagtctctttgtttaaagcagtattat |
2323757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 2344895 - 2344858
Alignment:
| Q |
183 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
220 |
Q |
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| T |
2344895 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
2344858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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