View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1722_low_2 (Length: 319)
Name: NF1722_low_2
Description: NF1722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1722_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 3880467 - 3880170
Alignment:
| Q |
17 |
acaagcaggctaaagaatgttaacagccatacaagtatagatcatttgaccaacaaaatcccaggaatgaaaagaaacctaatctctcacagatacaaca |
116 |
Q |
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| T |
3880467 |
acaagcaggctaaagaatgttaacatccatacaagtatagatcatttgaccaacaaaatcccaggaatgaaaagaaacctaatctctcacagatacaaca |
3880368 |
T |
|
| Q |
117 |
gccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaacaactaataatgattcatgcaattatttcaactaaagtcacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3880367 |
gccagaaaagttgagacattatcccaaggatcatctaccgctaaacactgatagtaacaactaataatgattcatgcaattatttcaactaaagtcacaa |
3880268 |
T |
|
| Q |
217 |
atttcagtaattctttaaactgattttgtgagaataccaagaataccctttcataaacttcatcaatatgacatac---aaaagtacatcagtattat |
311 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3880267 |
atttcagtagttctttaaactgattttgtgagaataccaagaataccctttcataaacttcatcaatatgacatacaaaaaaagtacatcagtattat |
3880170 |
T |
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