View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723-Insertion-3 (Length: 657)
Name: NF1723-Insertion-3
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 8 - 657
Target Start/End: Complemental strand, 53746620 - 53745971
Alignment:
| Q |
8 |
acaaaagtgtcatactcataacaatacacaacaaaaccatatactattattatcataaacgccaaatttataaaaataaaacg-----ccttcgttcttt |
102 |
Q |
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| T |
53746620 |
acaaaagtgtcatactcataacaatacacaacaaaaccatatactattattatcataaacgccaaatttataaaaataaaacgtgctaccttcgttcttt |
53746521 |
T |
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| Q |
103 |
tctgctagctagtatattccaattccatacgctgattcnnnnnnnnnnnnnnn-gcatgtcatatgagcttataagctgtaagctaaaaatctgacattg |
201 |
Q |
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| T |
53746520 |
tctgctagctagtatattccaattcaatacgctgattcttcttcttttttttttgcatgtcatatgagcttataagctgtaagctaaaaatctgacattg |
53746421 |
T |
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| Q |
202 |
ccaaacacggccttaaacgctaaattaacttgtttacccaaacagagactatattcaattctaaacttttattttcattttgattgcatggaaccatgga |
301 |
Q |
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| T |
53746420 |
ccaaacac------aaacgctaaattaacttgtttacccaaacagagactatattcaattctaaacttttattttcattttgattgcatggaaccatgga |
53746327 |
T |
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| Q |
302 |
ctgcagaccacctactcttatactgaaaggtaagatcaacaaaaataaatttgttgaaatgaatttcaatgaaaagaaaatgtatgagtaatctaatcat |
401 |
Q |
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| T |
53746326 |
ctgcagaccacctactcttatactgaaaggtaagatcaacaaaaataaatttgttgaaatgaatttcaatgaaaagaaaatgtatgagtaatctaatcat |
53746227 |
T |
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| Q |
402 |
gcttcaaatacatgttcaacagagatgtagcactttacgctttaggcataggggcatgtgcatcaaatgctgttgatgaagacgagcttaaatatgttta |
501 |
Q |
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| T |
53746226 |
gcttcaaatacatgttcaacagagatgtagcactttacgctttaggcataggggcatgtgcatcgaatgctgttgatgaagacgagcttaaatatgttta |
53746127 |
T |
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| Q |
502 |
ccatgaaaatggtcagcagtttatcaaggtatttttattttcaaattatattagtgctaaatgtttgctttaagccttttattctcttgtaacataaatt |
601 |
Q |
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| T |
53746126 |
ccatgaaaatggtcagcagtttatcaaggtatttttattttcaaattatattagtgttaaatgtttgctttaagccttttattctcttgtaacataaatt |
53746027 |
T |
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| Q |
602 |
ttatgtccaattgttctgatggttagaagtttgttagaactttgctatttttaaga |
657 |
Q |
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| T |
53746026 |
ttatgtccaattgttctgatggttagaagtttgttagaactttgctatttttaaga |
53745971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 8407467 - 8407420
Alignment:
| Q |
159 |
tgtcatatgagcttataagctgtaagctaaaaatctgacattgccaaa |
206 |
Q |
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| T |
8407467 |
tgtcatgtgagcttataagctataagctcaaaatctggcattgccaaa |
8407420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 29234626 - 29234577
Alignment:
| Q |
159 |
tgtcatatgagcttataagctgtaagctaaaaatctgacattgccaaaca |
208 |
Q |
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| T |
29234626 |
tgtcctataagcttataagctgtaagtttaaaatctggcattgccaaaca |
29234577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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