View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723-Insertion-4 (Length: 537)
Name: NF1723-Insertion-4
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723-Insertion-4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 8734935 - 8734557
Alignment:
| Q |
8 |
tgagcttcatttattccttcttgcagatgtcatggcagtttcatactctcgtgcttagtctttattttcatctttcttccnnnnnnnn-ggcttattttt |
106 |
Q |
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| T |
8734935 |
tgagcttcatttattccttcttgtagatgtcatgggagtttcatactcttgtgcttagtctttattttcatctttctttctttttttttggcttattttt |
8734836 |
T |
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| Q |
107 |
cacatgcaaccaaaataatacgtgattataannnnnnnnnnnnaatataaattccgagttaatgttagagttgcacattaagaggcttttgatttcacat |
206 |
Q |
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| T |
8734835 |
cacatgcaaccaaaagaatacgtgattataattttttt-----aatataaattccgagttaatgttagagttgcacattaagaggcttttgatttcacat |
8734741 |
T |
|
| Q |
207 |
tgttgcactacataatgcacttccatgcaattataaaacggttacatttataa-aaaatcttgtatggtgtgaaaaagttagaaaacggtgagttcaatt |
305 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8734740 |
tgttgcactagataatgcacttccatacaattataaaacggttacatttataaaaaaatcttgtatagtgtgaaaaagttagaaaacggtgagttcaatt |
8734641 |
T |
|
| Q |
306 |
tt-taatttttattggaaatggtcaatcgaccaacccnnnnnnnncctatgtttgttgctataatcttagtgtaataagtatga |
388 |
Q |
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|| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
8734640 |
ttattttttttattggaaatggtcaatcgaccaaccctttcttttcctatgtttgttgctataatcttagtgtcataagtatga |
8734557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 25213560 - 25213637
Alignment:
| Q |
8 |
tgagcttcatttattccttcttgcagatgtcatggcagtttcatactctcgtgcttagtctttattttcatctttctt |
85 |
Q |
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||||||||| ||||||||| ||||| ||| |||| |||| |||||||||||||||||||||| ||||||| |||||| |
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| T |
25213560 |
tgagcttcaattattcctttttgcaaatgccatgagagttccatactctcgtgcttagtctttgttttcatgtttctt |
25213637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 25217103 - 25217180
Alignment:
| Q |
8 |
tgagcttcatttattccttcttgcagatgtcatggcagtttcatactctcgtgcttagtctttattttcatctttctt |
85 |
Q |
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||||||||| ||||||||| ||||| ||| |||| |||| |||||||||||||||||||||| ||||||| |||||| |
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| T |
25217103 |
tgagcttcaattattcctttttgcaaatgccatgagagttccatactctcgtgcttagtctttgttttcatgtttctt |
25217180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 22187 - 22228
Alignment:
| Q |
44 |
agtttcatactctcgtgcttagtctttattttcatctttctt |
85 |
Q |
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|||||||||||||| ||||||||||||||||| | ||||||| |
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| T |
22187 |
agtttcatactctcatgcttagtctttattttgagctttctt |
22228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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