View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723-Insertion-5 (Length: 875)
Name: NF1723-Insertion-5
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 749; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 8 - 858
Target Start/End: Complemental strand, 38029323 - 38028477
Alignment:
| Q |
8 |
gttttatagtgttattattaaatgtttgttaatttatttatgttgattactagctggttatatctggtcggatctccattaccaggatgtcaagggtaga |
107 |
Q |
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| T |
38029323 |
gttttatagtgttattattaaatgtttgttaatttat----gttgattactagctggttatatctggtcggatctccattaccaggatgtcaagggtaga |
38029228 |
T |
|
| Q |
108 |
ctaactggtaagttgtcgtgatcgaattttttaagcacttttgtaggttgcacaattatattcaagagtgtagacccaatttggaaacgcgcaattttct |
207 |
Q |
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| T |
38029227 |
ctaactggtaagttgtcgtgattgaattttttaagcacttttgtaggttgcacaattatattcaagagtgtagacccaatttggaaacgcgcaattttct |
38029128 |
T |
|
| Q |
208 |
ctggggccaatttagtgcacaacataaaataaacctgaactagtctttgacatttttatattgtggacaaattagtctctatcgtaatgaatccggtgac |
307 |
Q |
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| T |
38029127 |
ctggggccaatttagtgcacaacataaaataaacctgaactagtctttgacatttttatattggggacaaattagtctctatcgtaatgaatcgggtgac |
38029028 |
T |
|
| Q |
308 |
taattaattggcttgagaaaaaattgtgagaccaaattgggtcttcactgtatattcaattatcatactggagtattttactactatcaatttgannnnn |
407 |
Q |
| |
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| T |
38029027 |
taattaattggcttgagaaaaaattgtgagaccaaattgggtcttcactgtatattcaattatcatactggagtattttactactatcaatttgattttt |
38028928 |
T |
|
| Q |
408 |
nnaacgattttatcttaaaactttttgctagctctaaggaagagtcagaaggaagcaagattggtggtccagaaattttctggaataaatgatactcata |
507 |
Q |
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| T |
38028927 |
ttaacgattttatcttaaaacattttgctagctctaaggaagagtcagaaggaagcaagattggtggtccagaaattttctggaataaatgatactcata |
38028828 |
T |
|
| Q |
508 |
atatcatacatgaacaacaaggcggcattgatccatccgatttagaatcgagccttatgcatcagtggaaatctctgtttgtccatatgcaaaacatatt |
607 |
Q |
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|
| T |
38028827 |
atatcatacatgaacaacaaggcggcattgatccatccgatttagaatcgagccttatgcatcagtggaaatctctgtttgttcatatgcaaaacatatt |
38028728 |
T |
|
| Q |
608 |
gggtcatgaaagtagacaacttgtgagtttctgtgctatctatcgcttgtgcctaatatttcaaatttcaacatttacctcaactttgatatccattcgc |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
38028727 |
gggtcatgaaagtagacaacttgtgagtttctgtgctatctatcacttgtgcctaatatttcaaatttcaacatttacctcaactttgatatccattccc |
38028628 |
T |
|
| Q |
708 |
attttatataacttttcaagggtttctatccttgatattgctaaaaattggtgtcaattacggttgatgcaacctcaattgcagtagtcagatacatatn |
807 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028627 |
attttatataacttttcaagggtttctatacttgatattgctaaaaattggcgtcaattacggttgatgcaacctcaattgcagtagtcagatacatata |
38028528 |
T |
|
| Q |
808 |
nnnnnnnccataatatattttgaccctgatacttttgcgtatcaatggaac |
858 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38028527 |
aaaaaaaccataatatattttgaccctgatacttttgcttatcaatggaac |
38028477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 356
Target Start/End: Original strand, 21207006 - 21207035
Alignment:
| Q |
327 |
aaaattgtgagaccaaattgggtcttcact |
356 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
21207006 |
aaaattgtgagaccaaattgggtcttcact |
21207035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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