View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_high_12 (Length: 349)

Name: NF1723_high_12
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_high_12
NF1723_high_12
[»] chr2 (3 HSPs)
chr2 (1-333)||(7676032-7676364)
chr2 (70-193)||(39526007-39526129)
chr2 (74-190)||(17979059-17979176)
[»] chr5 (1 HSPs)
chr5 (2-196)||(17460336-17460530)
[»] chr6 (2 HSPs)
chr6 (11-190)||(22791678-22791857)
chr6 (64-171)||(29410532-29410638)
[»] chr4 (3 HSPs)
chr4 (1-252)||(11420456-11420702)
chr4 (81-252)||(32671608-32671779)
chr4 (62-195)||(17247795-17247927)
[»] chr3 (1 HSPs)
chr3 (42-196)||(2872394-2872548)
[»] chr7 (6 HSPs)
chr7 (4-184)||(18348273-18348451)
chr7 (75-194)||(19200836-19200954)
chr7 (62-193)||(7211060-7211190)
chr7 (81-196)||(21570630-21570744)
chr7 (70-132)||(19160579-19160641)
chr7 (70-132)||(20759978-20760040)
[»] chr8 (1 HSPs)
chr8 (64-125)||(25114841-25114902)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 7676364 - 7676032
Alignment:
Q  1 atcttcaccaaacactatgatgaaattcttactaacaaacgttgaagaacttttgtacgactgtatcaaatcaatatcactttcaaatgaatataactta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7676364 atcttcaccaaacactatgatgaaattcttactaacaaacgttgaagaacttttgtacaactgtatcaaatcaatatcactttcaaatgaatataactta 7676265  T
Q  101 atggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgagaaagtgatatttgatcttagannnn 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        
T  7676264 atggtcggaaacttttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgaaaaagtgatatttgatcttagatttt 7676165  T
Q  201 nnnaataagaaagttggtttttggtgtttaaatgtcaaatgtatttatagagcccgtataaaaattccatgaagtaggacatcggtcccaaaaggttcca 300  Q
       |||| | ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  7676164 tttaatatgcaagtttgtttttggtgtttagatgttaaatgtatttatagagcccgtataaaaattccatgaagtaggacatcaatcccaaaaggttcca 7676065  T
Q  301 tgaaccattactgagcatttgaatcacaccagt 333  Q
    |||||||||||||||||||||||||||||||||    
T  7676064 tgaaccattactgagcatttgaatcacaccagt 7676032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 39526007 - 39526129
Alignment:
Q  70 atcaatatcactttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagttta 169  Q
    |||||||||||||||||||||||||| ||||||  |  |||||| ||||||||||||||||||||| ||||||| || ||||| |||||||||| ||||     
T  39526007 atcaatatcactttcaaatgaatatatcttaattcttagaaaccattttggatatgaaaatataatcaaggtttcac-aaaattgaagtttgaacgtttt 39526105  T
Q  170 agcgagaaagtgatatttgatctt 193  Q
     | || ||||||||||||||||||    
T  39526106 tgtgataaagtgatatttgatctt 39526129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 17979059 - 17979176
Alignment:
Q  74 atatcactttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaa--g 171  Q
    |||||||||||||||||||||| ||||||| ||   ||   ||||||||||||||||||||| ||||||| |||||| | |||||||||||||||    |    
T  17979059 atatcactttcaaatgaatatatcttaatgttcattaagacttttggatatgaaaatataatcaaggtttcacaaaa-tagaagtttgaaagtttttttg 17979157  T
Q  172 cgagaaagtgatatttgat 190  Q
     ||||||||||||||||||    
T  17979158 tgagaaagtgatatttgat 17979176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 17460336 - 17460530
Alignment:
Q  2 tcttcaccaaacactatgatgaaattcttactaacaaacgttgaagaacttttgtacgactgtatcaaatcaatatcactttcaaatgaatataacttaa 101  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| |  |||||||||||||||| | |||| ||||||||||||||||    
T  17460336 tcttcacctaacactatgatgaaattcttactaacaagtgttgaagaacttttgtatggttgtatcaaatcaatattaatttctaatgaatataacttaa 17460435  T
Q  102 tggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgagaaagtgatatttgatcttaga 196  Q
    || ||  ||| |||| |||||||||||||||||| ||||||| ||||||||| | |||| |||||||||| |||||||| |||||| ||||||||    
T  17460436 tgctcataaatctttctggatatgaaaatataatcaaggtttcacaaaaatgaatgttttaaagtttaagtgagaaagtaatatttaatcttaga 17460530  T

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Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 22791857 - 22791678
Alignment:
Q  11 aacactatgatgaaattcttactaacaaacgttgaagaacttttgtacgactgtatcaaatcaatatcactttcaaatgaatataacttaatggtcggaa 110  Q
    ||||||||||||||||||||| ||||||  || ||||||||||||||   ||||||||||||||||| |||||||||||| |||||||||||| ||  ||    
T  22791857 aacactatgatgaaattcttattaacaattgtcgaagaacttttgtatagctgtatcaaatcaatattactttcaaatgagtataacttaatgctcataa 22791758  T
Q  111 acctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgagaaagtgatatttgat 190  Q
    |||||||||||||| |||||| ||| ||||||| | ||||||| || ||| |||||| ||| ||||||||||||||||||    
T  22791757 acctttttggatataaaaatacaatcaaggtttaaaaaaaatgaaaattttaaagttaaagtgagaaagtgatatttgat 22791678  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 29410532 - 29410638
Alignment:
Q  64 tatcaaatcaatatcactttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaa 163  Q
    ||||| ||||||||||||||||||| ||||||| |||||| |  |||||||||| ||||||||||||||||| || | || |||||||||||||||||||    
T  29410532 tatcatatcaatatcactttcaaattaatataaattaatgcttagaaacctttt-ggatatgaaaatataatcaaagcttcacaaaaatggaagtttgaa 29410630  T
Q  164 agtttaag 171  Q
    ||||||||    
T  29410631 agtttaag 29410638  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 11420456 - 11420702
Alignment:
Q  1 atcttcaccaaacactatgatgaaattcttactaacaaacgttgaagaacttttgtacgactgtatcaaatcaatatcactttcaaatgaatataactta 100  Q
    |||||||||||||||||| || |||||||||   ||||| |||||||||||||| |    |||||||||||||| |||||||||||||||||||||||||    
T  11420456 atcttcaccaaacactataataaaattctta---acaaatgttgaagaacttttttgtagctgtatcaaatcaaaatcactttcaaatgaatataactta 11420552  T
Q  101 atggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgagaaagtgatatttgatcttagannnn 200  Q
    |||  |  || |||||||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||| |||||| |||  || |||||||||        
T  11420553 atgcccataagcctttttggatatgaaaatataatcaagg--ttacaaaaatgtaagtttgaaagtttaagtgagaaaatgacgttcgatcttagacttt 11420650  T
Q  201 nnnaataagaaagttggtttttggtgtttaaatgtcaaatgtatttatagag 252  Q
       |||  ||||||||||   || |||||| |||||||||||| ||||||||    
T  11420651 ttgaatttgaaagttggtgaatgttgtttagatgtcaaatgtacttatagag 11420702  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 81 - 252
Target Start/End: Complemental strand, 32671779 - 32671608
Alignment:
Q  81 tttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgagaaagt 180  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||| ||||||| ||||||| ||||||||| |||||  |||||||||| ||||||||    
T  32671779 tttcaaatgaatataacttaatgctcagaaatctttttggatatgaagatataatcaaggtttcacaaaaatgaaagttcaaaagtttaagtgagaaagt 32671680  T
Q  181 gatatttgatcttagannnnnnnaataagaaagttggtttttggtgtttaaatgtcaaatgtatttatagag 252  Q
    ||||||||||||||||       |||| |||||||| ||  || |||||| |||||||||||||||||||||    
T  32671679 gatatttgatcttagaatatttgaatatgaaagttgcttaatgttgtttagatgtcaaatgtatttatagag 32671608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 17247795 - 17247927
Alignment:
Q  62 tgtatcaaatcaatatcacttt-caaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagttt 160  Q
    |||||||||| ||| ||||||| |||||||||||||||||||| |   ||||||||||||||||||||||||||| ||||||| || |||| |||| |||    
T  17247795 tgtatcaaatgaatgtcacttttcaaatgaatataacttaatgcttaaaaacctttttggatatgaaaatataat-aaggtttcac-aaaacggaaattt 17247892  T
Q  161 gaaagtttaagcgagaaagtgatatttgatcttag 195  Q
    ||||||||||| |||||| ||||||||||||||||    
T  17247893 gaaagtttaagtgagaaaatgatatttgatcttag 17247927  T

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Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 2872394 - 2872548
Alignment:
Q  42 ttgaagaacttttgtacgactgtatcaaatcaatatcacttt-caaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaagg 140  Q
    |||||||||||| ||| | ||||||||||||||||||||||| ||||||| |||||||||||| |  |||||||||||||||||||||||||||| ||||    
T  2872394 ttgaagaactttcgtatgtctgtatcaaatcaatatcacttttcaaatgagtataacttaatgttgagaaacctttttggatatgaaaatataattaagg 2872493  T
Q  141 ttttacaaaaatggaagtttgaaagtttaagcgagaaagtgatatttgatcttaga 196  Q
    ||| || ||||| |||||||||||||||  |  |||||||||||||||||||||||    
T  2872494 tttcac-aaaattgaagtttgaaagtttttgttagaaagtgatatttgatcttaga 2872548  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 18348451 - 18348273
Alignment:
Q  4 ttcaccaaacactatgatgaaattcttactaacaaacgttgaagaacttttgtacgactgtatcaaatcaatatcacttt-caaatgaatataacttaat 102  Q
    ||||||||||||| |||||||||  |||| |||||| ||||||||||||||||| |  || ||||||||||||||| ||| |||||||||||||||||||    
T  18348451 ttcaccaaacact-tgatgaaatg-ttacaaacaaatgttgaagaacttttgtatggttgaatcaaatcaatatcatttttcaaatgaatataacttaat 18348354  T
Q  103 ggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgagaaagtgata 184  Q
    | ||  |||||||| |||||||||||||||||| ||| |||||| |||||||||||||||||||||  | ||||||||||||    
T  18348353 gctcaaaaacctttatggatatgaaaatataatcaagattttac-aaaatggaagtttgaaagttttcgtgagaaagtgata 18348273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 19200954 - 19200836
Alignment:
Q  75 tatcactttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcga 174  Q
    ||||| ||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||| ||||||| |  ||||| |||||||||||||||||| |     
T  19200954 tatcattttcaaatgaatataacttaatgctcaaaaaactttttggatatgaaaatataattaaggtttca-taaaattgaagtttgaaagtttaagtgc 19200856  T
Q  175 gaaagtgatatttgatctta 194  Q
    ||||||||||||||||||||    
T  19200855 gaaagtgatatttgatctta 19200836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 193
Target Start/End: Complemental strand, 7211190 - 7211060
Alignment:
Q  62 tgtatcaaatcaatatcactttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttg 161  Q
    ||||||| |||||||| |||||||||| ||||||  |||||| ||  ||||| ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7211190 tgtatcatatcaatataactttcaaataaatatatgttaatgctcataaacccttttggatatgaaaatataatcaaggtttcac-aaaatggaagtttg 7211092  T
Q  162 aaagtttaagcgagaaagtgatatttgatctt 193  Q
    |||||||  |  ||||| ||||||||||||||    
T  7211091 aaagtttttgaaagaaaatgatatttgatctt 7211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 21570630 - 21570744
Alignment:
Q  81 tttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatataataaaggttttacaaaaatggaagtttgaaagtttaagcgagaaagt 180  Q
    ||||||||||||||||| ||||  ||  ||||||||||||||||||||||||||  ||||||  || ||||||||| |||||||||||  | ||||||||    
T  21570630 tttcaaatgaatataacgtaatattcaaaaacctttttggatatgaaaatataaacaaggttccac-aaaatggaaatttgaaagtttttgtgagaaagt 21570728  T
Q  181 gatatttgatcttaga 196  Q
    ||||||| ||||||||    
T  21570729 gatatttaatcttaga 21570744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 19160641 - 19160579
Alignment:
Q  70 atcaatatcactttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatat 132  Q
    ||||||||||||||||||||||||||| |||||| |  ||||  ||||||||||| |||||||    
T  19160641 atcaatatcactttcaaatgaatataatttaatgtttagaaatttttttggatataaaaatat 19160579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 20760040 - 20759978
Alignment:
Q  70 atcaatatcactttcaaatgaatataacttaatggtcggaaacctttttggatatgaaaatat 132  Q
    ||||||||||||||||||||||||||| |||||| |  ||||  ||||||||||| |||||||    
T  20760040 atcaatatcactttcaaatgaatataatttaatgtttagaaatttttttggatataaaaatat 20759978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 25114841 - 25114902
Alignment:
Q  64 tatcaaatcaatatcactttcaaatgaatataacttaatggtcggaaacctttttggatatg 125  Q
    |||||||| ||||||||| ||||||||||||| ||| ||| || |||||| ||||| |||||    
T  25114841 tatcaaattaatatcactctcaaatgaatataccttgatgctcagaaaccattttgaatatg 25114902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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