View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_high_17 (Length: 320)

Name: NF1723_high_17
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_high_17
NF1723_high_17
[»] chr4 (17 HSPs)
chr4 (171-307)||(4383081-4383217)
chr4 (2-68)||(39931493-39931559)
chr4 (5-77)||(23284743-23284815)
chr4 (1-54)||(3966814-3966867)
chr4 (1-70)||(4603280-4603349)
chr4 (1-53)||(9201736-9201788)
chr4 (1-53)||(19414201-19414253)
chr4 (1-53)||(42617178-42617230)
chr4 (11-70)||(15184615-15184674)
chr4 (1-67)||(15179889-15179955)
chr4 (1-71)||(46175927-46175997)
chr4 (1-71)||(14987548-14987621)
chr4 (1-68)||(22303166-22303233)
chr4 (1-68)||(47202896-47202963)
chr4 (1-53)||(19725379-19725432)
chr4 (1-53)||(7673541-7673593)
chr4 (54-102)||(46704286-46704334)
[»] chr2 (16 HSPs)
chr2 (1-78)||(2757034-2757111)
chr2 (1-70)||(32366218-32366287)
chr2 (1-70)||(5516145-5516214)
chr2 (1-53)||(22422117-22422169)
chr2 (1-53)||(30382217-30382269)
chr2 (1-68)||(446498-446565)
chr2 (1-70)||(32521994-32522063)
chr2 (1-69)||(40301429-40301496)
chr2 (124-171)||(34913458-34913505)
chr2 (1-67)||(2401570-2401636)
chr2 (1-67)||(22898305-22898371)
chr2 (1-70)||(23956212-23956281)
chr2 (1-53)||(17546510-17546562)
chr2 (1-53)||(21788543-21788595)
chr2 (50-78)||(22422181-22422209)
chr2 (1-37)||(26440195-26440231)
[»] chr7 (18 HSPs)
chr7 (10-78)||(24371379-24371447)
chr7 (1-71)||(44799470-44799540)
chr7 (1-70)||(22575655-22575724)
chr7 (1-68)||(991570-991637)
chr7 (1-69)||(23137111-23137179)
chr7 (2-53)||(35246755-35246806)
chr7 (5-70)||(14675912-14675977)
chr7 (1-78)||(25536323-25536400)
chr7 (124-173)||(44613541-44613590)
chr7 (1-69)||(1312183-1312251)
chr7 (1-69)||(16958885-16958953)
chr7 (1-53)||(22032848-22032900)
chr7 (1-68)||(16932878-16932945)
chr7 (1-68)||(16938261-16938328)
chr7 (1-70)||(47654362-47654431)
chr7 (1-37)||(1111351-1111387)
chr7 (1-53)||(19914031-19914083)
chr7 (7-67)||(33288029-33288089)
[»] chr6 (15 HSPs)
chr6 (1-70)||(32165209-32165278)
chr6 (1-70)||(1468243-1468312)
chr6 (1-78)||(22708347-22708424)
chr6 (1-70)||(9894844-9894913)
chr6 (1-78)||(10401751-10401828)
chr6 (1-53)||(34223472-34223524)
chr6 (1-68)||(10184278-10184345)
chr6 (1-78)||(17300702-17300779)
chr6 (1-69)||(1189453-1189521)
chr6 (1-68)||(32615363-32615430)
chr6 (1-71)||(21609997-21610067)
chr6 (2-57)||(23314763-23314818)
chr6 (2-57)||(23324930-23324985)
chr6 (1-67)||(17915017-17915083)
chr6 (1-50)||(29052422-29052470)
[»] chr1 (20 HSPs)
chr1 (1-69)||(15631974-15632042)
chr1 (1-71)||(42591450-42591520)
chr1 (1-69)||(15235109-15235177)
chr1 (4-78)||(8410194-8410268)
chr1 (1-69)||(17628373-17628441)
chr1 (1-70)||(32497220-32497289)
chr1 (1-53)||(15791469-15791521)
chr1 (1-68)||(8061957-8062024)
chr1 (1-52)||(16225594-16225645)
chr1 (1-71)||(5243352-5243422)
chr1 (1-67)||(17814262-17814328)
chr1 (9-67)||(19395846-19395904)
chr1 (1-70)||(17348947-17349016)
chr1 (1-68)||(3116010-3116077)
chr1 (55-102)||(46473116-46473163)
chr1 (1-67)||(5347226-5347292)
chr1 (1-47)||(22088357-22088403)
chr1 (1-67)||(22103181-22103247)
chr1 (124-173)||(9572853-9572902)
chr1 (1-53)||(35275846-35275898)
[»] chr3 (19 HSPs)
chr3 (1-70)||(29614262-29614331)
chr3 (4-70)||(29830590-29830656)
chr3 (1-70)||(3645371-3645440)
chr3 (1-70)||(20894571-20894640)
chr3 (1-70)||(1516046-1516115)
chr3 (1-70)||(42381208-42381277)
chr3 (1-70)||(4257246-4257317)
chr3 (1-50)||(42409922-42409971)
chr3 (1-53)||(42956127-42956179)
chr3 (4-67)||(37778205-37778268)
chr3 (1-67)||(40240525-40240591)
chr3 (1-70)||(17752079-17752148)
chr3 (1-70)||(19053399-19053468)
chr3 (1-66)||(40581024-40581089)
chr3 (1-53)||(10449063-10449115)
chr3 (1-53)||(12004378-12004430)
chr3 (1-53)||(24841334-24841386)
chr3 (1-77)||(25341332-25341408)
chr3 (1-45)||(42615039-42615083)
[»] chr5 (10 HSPs)
chr5 (1-69)||(26003067-26003135)
chr5 (1-75)||(43268584-43268658)
chr5 (1-53)||(4728930-4728982)
chr5 (1-70)||(38461228-38461299)
chr5 (1-67)||(20458506-20458572)
chr5 (1-67)||(41419573-41419639)
chr5 (1-70)||(29659129-29659198)
chr5 (7-67)||(11991376-11991436)
chr5 (1-69)||(16722096-16722164)
chr5 (1-53)||(29418700-29418752)
[»] chr8 (21 HSPs)
chr8 (1-69)||(11988266-11988334)
chr8 (1-69)||(12607149-12607217)
chr8 (1-53)||(38338799-38338851)
chr8 (1-68)||(19925628-19925695)
chr8 (1-68)||(218202-218269)
chr8 (1-68)||(694762-694829)
chr8 (1-68)||(698971-699038)
chr8 (1-68)||(731825-731892)
chr8 (1-68)||(855721-855788)
chr8 (1-71)||(29218199-29218269)
chr8 (1-70)||(16926676-16926745)
chr8 (1-70)||(37410861-37410930)
chr8 (5-70)||(38195555-38195620)
chr8 (1-53)||(3664221-3664273)
chr8 (1-53)||(42102192-42102244)
chr8 (1-69)||(42363265-42363333)
chr8 (1-68)||(32751209-32751276)
chr8 (1-68)||(35055493-35055559)
chr8 (1-46)||(35123154-35123199)
chr8 (1-49)||(29713267-29713315)
chr8 (1-53)||(32212963-32213015)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-53)||(38401-38453)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-53)||(242588-242640)
[»] scaffold0048 (1 HSPs)
scaffold0048 (1-39)||(59367-59405)
[»] scaffold0006 (1 HSPs)
scaffold0006 (4-53)||(40625-40674)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 171 - 307
Target Start/End: Complemental strand, 4383217 - 4383081
Alignment:
Q  171 taagattaaaagcaaattattttttagataaaccatacgtttttcaaatttgtatagggattcaagaaaaatgtaacccttcatgatatttatgttgcat 270  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||| | |||||||||||  ||||||||||||||||||||| |||||||||  | ||    
T  4383217 taagactaaaagcaaataattttttagataaaccatacctttttcaattatgtatagggatctaagaaaaatgtaacccttcataatatttatggagtat 4383118  T
Q  271 atgaataattgaaacgaagaaaataccttgtgtagaa 307  Q
    |||||||||||||| ||||||||||||||||||||||    
T  4383117 atgaataattgaaatgaagaaaataccttgtgtagaa 4383081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 39931493 - 39931559
Alignment:
Q  2 tatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||    
T  39931493 tatgtaaataaataagtttttattttattttataagctctcactaacgaaaattgtatcttcataaa 39931559  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 23284743 - 23284815
Alignment:
Q  5 gtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaa 77  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||| ||| | |||||||| ||||||||    
T  23284743 gtaaataaataagtttttattttaatttataagctctcactaacgaaaattgtatcttcataaaataccttaa 23284815  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3966867 - 3966814
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaac 54  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||||||||    
T  3966867 ttatgtaaataaataagtttttattttaatttataagctctcgctaacgaaaac 3966814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4603280 - 4603349
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||||||||||||| |||| ||||| ||||||| |||||||||||||||| ||| | ||||||||||    
T  4603280 ttatgtaaataaataagcttttattttaatttataaactctcactaacgaaaattgtatcttcataaact 4603349  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9201788 - 9201736
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  9201788 ttatgtaaataaataagtttttattttaatttataagctctcgctaacgaaaa 9201736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19414253 - 19414201
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  19414253 ttatgtaaataaataagcttttattttactttataagctctcactaacgaaaa 19414201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 42617178 - 42617230
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||||||||||| ||||| |||||||| | |||||||||||||    
T  42617178 ttatgtaaataaataagtttttattttaatttataagttttcactaacgaaaa 42617230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 15184674 - 15184615
Alignment:
Q  11 aaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||| ||||| |||||||| ||||||||||||||| ||| | ||||||||||    
T  15184674 aaataagtttttattttaatttataagttctcactaacgaaaattgtatcttcataaact 15184615  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15179955 - 15179889
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||||||||||||||| |||| ||||| | |||||| ||| ||||||||||| ||| |||||||||    
T  15179955 ttatgtaaataaataagcttttattttaatctataagttctgactaacgaaaattgtattttcataa 15179889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 46175927 - 46175997
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaacta 71  Q
    |||||||||||||||||  ||| ||||| |||||||||||| |||| |||||| ||| | |||||||||||    
T  46175927 ttatgtaaataaataagcatttattttaatttataagctcttactagcgaaaattgtatcttcataaacta 46175997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14987548 - 14987621
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa---ctgttttttcataaacta 71  Q
    |||| ||||||||||||||||| | ||| || ||||| |||||||||||||||    |||||||||||||||||    
T  14987548 ttatataaataaataagtttttatattaattcataagttctcactaacgaaaattgttgttttttcataaacta 14987621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 22303233 - 22303166
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    ||||||||||| |||||||||| ||||| ||||||| || ||||||| ||||| ||| | ||||||||    
T  22303233 ttatgtaaatatataagtttttattttaatttataaactttcactaatgaaaattgtatcttcataaa 22303166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47202963 - 47202896
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||| ||||||| |||| |||| ||||| |||||||| ||||||||||||||| ||| | ||||||||    
T  47202963 ttatataaataagtaagcttttattttaatttataagatctcactaacgaaaattgtatcttcataaa 47202896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19725432 - 19725379
Alignment:
Q  1 ttatgtaaataaataagtttttg-ttttattttataagctctcactaacgaaaa 53  Q
    ||||||||| ||||||||||||  ||||| |||||||||||||||||| |||||    
T  19725432 ttatgtaaaaaaataagttttttattttaatttataagctctcactaatgaaaa 19725379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7673593 - 7673541
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||| |||  ||| ||||| ||||||||| ||||||||||||||    
T  7673593 ttatgtaaataaacaaggatttattttaatttataagccctcactaacgaaaa 7673541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 46704286 - 46704334
Alignment:
Q  54 ctgttttttcataaactaccttaaagacctcacgaataataaattaaag 102  Q
    ||||||||||||||||||||||||  | |||| ||||||||||| ||||    
T  46704286 ctgttttttcataaactaccttaacaagctcatgaataataaataaaag 46704334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2757034 - 2757111
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaaa 78  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2757034 ttatgtaaataaataagtttttattttattttataagctctcactaacgaaaactgttttttcataaactactttaaa 2757111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32366287 - 32366218
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||  || | ||||||||||    
T  32366287 ttatgtaaataaataagcttttgttttattttataagctcttactaacgaaaatcgtatattcataaact 32366218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5516214 - 5516145
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||| ||||||||||| |||||| ||| |||||||||||||||||||||||| ||| |||| |||||||    
T  5516214 ttatgcaaataaataagcttttgtgttaatttataagctctcactaacgaaaattgtatttttataaact 5516145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22422117 - 22422169
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  22422117 ttatgtaaataaataagtttttattttaatttataagctctcactaacaaaaa 22422169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30382217 - 30382269
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  30382217 ttatgtaaataaataagcttttgttttaatttataagctttcactaacgaaaa 30382269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 446565 - 446498
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| |||| |||| ||||| |||||||||||||||||||||||| ||| | ||||||||    
T  446565 ttatgtaaataagtaagcttttattttaatttataagctctcactaacgaaaattgtatcttcataaa 446498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32521994 - 32522063
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||| | ||||| |||||||||||| ||||||||||| ||| | ||||| ||||    
T  32521994 ttatgtaaataaataagtttatattttaatttataagctcttactaacgaaaattgtatcttcatgaact 32522063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40301496 - 40301429
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||||||||||| | |||| ||||| ||||||| |||||||||||||||| ||| | |||||||||    
T  40301496 ttatgtaaataaata-gcttttattttaatttataaactctcactaacgaaaagtgtatcttcataaac 40301429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 34913458 - 34913505
Alignment:
Q  124 atttatttgtatacgctgttttgcataagctcaatccgaacggtccct 171  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||| ||||    
T  34913458 atttatttgcataagctgttttgcataagctcaatccaaacggaccct 34913505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2401570 - 2401636
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    |||||||||||||||| ||||| ||||| | |||||| ||| |||||| |||| ||| |||||||||    
T  2401570 ttatgtaaataaataaatttttattttaatctataagttctgactaacaaaaattgtattttcataa 2401636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22898305 - 22898371
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||||||||||||||| |||| ||||| | |||||| | | ||||||||||| ||| |||||||||    
T  22898305 ttatgtaaataaataagcttttattttaatctataagttttgactaacgaaaattgtattttcataa 22898371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 23956212 - 23956281
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||| |||||||||||||||| | ||| |||||||| ||||| ||||||||| ||| | || |||||||    
T  23956212 ttatgcaaataaataagtttttatgttaatttataagttctcattaacgaaaattgtatctttataaact 23956281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17546562 - 17546510
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||||| ||||| | ||| |||||||| | |||||||||||||    
T  17546562 ttatgtaaataaataaatttttatgttagtttataagttttcactaacgaaaa 17546510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21788595 - 21788543
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||| ||||||||||| |||| | ||| || |||||||||||||||||||||    
T  21788595 ttatgcaaataaataagcttttatattaattcataagctctcactaacgaaaa 21788543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 22422181 - 22422209
Alignment:
Q  50 aaaactgttttttcataaactaccttaaa 78  Q
    |||||||||||||||||||||||||||||    
T  22422181 aaaactgttttttcataaactaccttaaa 22422209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26440231 - 26440195
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataag 37  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  26440231 ttatgtaaataaataagtttttattttaatttataag 26440195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 24371379 - 24371447
Alignment:
Q  10 taaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaaa 78  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  24371379 taaataagtttttattttattttataagctctcactaacgaaaattgtatcttcataaactaccttaaa 24371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44799540 - 44799470
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaacta 71  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||| | | | | |||||||||||    
T  44799540 ttatgtaaataaataagtttttattttaatttataagctctcactaacgaatattctatcttcataaacta 44799470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22575724 - 22575655
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||| |||||||||||||| ||||| |||||||||||| ||||||||||| ||| | ||||||||||    
T  22575724 ttatgtagataaataagtttttattttaatttataagctcttactaacgaaaattgtatcttcataaact 22575655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 991637 - 991570
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    ||||||||||||||||| |||| ||||| ||||||| |||||||||||||||| ||| | ||||||||    
T  991637 ttatgtaaataaataagcttttattttaatttataaactctcactaacgaaaagtgtatcttcataaa 991570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23137111 - 23137179
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    |||||||||||| |||| |||| ||||| |||||||||||||||||| ||||| ||| | |||||||||    
T  23137111 ttatgtaaataagtaagcttttattttaatttataagctctcactaatgaaaattgtatcttcataaac 23137179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 35246806 - 35246755
Alignment:
Q  2 tatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||||| |||| ||||| ||||||||| ||||||||||||||    
T  35246806 tatgtaaataaataagcttttattttaatttataagccctcactaacgaaaa 35246755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 14675912 - 14675977
Alignment:
Q  5 gtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||| ||||| |||||||||| || |||| ||||| ||| | ||||||||||    
T  14675912 gtaaataaataagtttttattttaatttataagctttcgctaatgaaaattgtatcttcataaact 14675977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25536400 - 25536323
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaaa 78  Q
    ||||||||||| |||| ||||| ||||| ||| |||||| ||| ||||||||| | | | ||||||||||||||||||    
T  25536400 ttatgtaaatagataaatttttattttaatttgtaagctatcattaacgaaaattatgtcttcataaactaccttaaa 25536323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 44613541 - 44613590
Alignment:
Q  124 atttatttgtatacgctgttttgcataagctcaatccgaacggtccctaa 173  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||    
T  44613541 atttatttgcataagctgttttgcataagctcaatccaaacggaccctaa 44613590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1312251 - 1312183
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||||||||||||  |||| ||||| ||||||| |||||||||| ||||| ||| | |||||||||    
T  1312251 ttatgtaaataaataaacttttattttaatttataaactctcactaatgaaaagtgtatattcataaac 1312183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16958953 - 16958885
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||| ||||||||| |||| ||||| |||||||||| | ||||||||||| ||| | |||||||||    
T  16958953 ttatgtatataaataagcttttattttaatttataagcttttactaacgaaaattgtatcttcataaac 16958885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22032900 - 22032848
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||| |||||||||||||||| | ||| |||||||| |||||||||||||||    
T  22032900 ttatgcaaataaataagtttttatcttaatttataagttctcactaacgaaaa 22032848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 16932878 - 16932945
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    ||||||| ||||||||| |||| ||||| |||||||||| | ||||||||||| ||| | ||||||||    
T  16932878 ttatgtatataaataagcttttattttaatttataagcttttactaacgaaaattgtatcttcataaa 16932945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 16938261 - 16938328
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    ||||||| ||||||||| |||| ||||| |||||||||| | ||||||||||| ||| | ||||||||    
T  16938261 ttatgtatataaataagcttttattttaatttataagcttttactaacgaaaattgtatcttcataaa 16938328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47654362 - 47654431
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||| |||||||||||||||| | ||| || ||||| ||||||||||||||| |||   ||||||||||    
T  47654362 ttatgcaaataaataagtttttatcttaattcataagttctcactaacgaaaattgtaccttcataaact 47654431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1111387 - 1111351
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataag 37  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  1111387 ttatgtaaataaataagtttttattttaatttataag 1111351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 19914083 - 19914031
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||| ||||| | |||||||| | |||||||||||    
T  19914083 ttatgtaaataaataagcttttattttaatatataagcttttactaacgaaaa 19914031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 33288029 - 33288089
Alignment:
Q  7 aaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    |||||||||||||||| | ||| || ||||| | ||||||||||||||||| | |||||||    
T  33288029 aaataaataagtttttatgttaattcataagttttcactaacgaaaactgtatcttcataa 33288089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32165209 - 32165278
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| | ||||||||||    
T  32165209 ttatgtaaataaataagtttttattttaatttataagctctcactaacgaaaattgtatcttcataaact 32165278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1468312 - 1468243
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||||  |||| ||||||||||    
T  1468312 ttatgtaaataaataagtttttattttaatttataagctcttactaacgaaaatggtttcttcataaact 1468243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22708424 - 22708347
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaaa 78  Q
    ||||| |||||||||||||||| ||||| ||||||| ||| |||||||||||| ||| | ||||||||||||||||||    
T  22708424 ttatgcaaataaataagtttttattttaatttataaactcccactaacgaaaattgtatcttcataaactaccttaaa 22708347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9894913 - 9894844
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||   ||||||||||    
T  9894913 ttatgtaaataaataagtttttattttaatttataagctctcaataacgaaaattgtaaattcataaact 9894844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10401751 - 10401828
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaaa 78  Q
    |||| ||| ||||||||||||| ||||| |||||||||||| ||||||||||| ||| | || |||||||||||||||    
T  10401751 ttatataactaaataagtttttattttaatttataagctcttactaacgaaaattgtatcttgataaactaccttaaa 10401828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34223472 - 34223524
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  34223472 ttatgtaaataaataagtttttattttaatttataagctctcactaacaaaaa 34223524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10184278 - 10184345
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||| |||||||||||| |||| ||||| |||||||||||| ||||||||||| ||||| ||||||||    
T  10184278 ttatataaataaataagcttttattttaatttataagctcttactaacgaaaattgtttcttcataaa 10184345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17300702 - 17300779
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaaa 78  Q
    |||||||||||||||| ||||| ||||| |||||||| | ||||||||||||  ||| | ||||||||| ||||||||    
T  17300702 ttatgtaaataaataactttttattttaatttataagttgtcactaacgaaagttgtatattcataaacaaccttaaa 17300779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1189521 - 1189453
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||||||||||||| |||  ||||| ||||||| |||||||||||||||| ||| | |||||||||    
T  1189521 ttatgtaaataaataagctttaattttaatttataaactctcactaacgaaaagtgtatcttcataaac 1189453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32615363 - 32615430
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| |||| |||| ||||| |||||| ||||||||||||||||| ||| | ||||||||    
T  32615363 ttatgtaaataagtaagcttttattttaatttatatgctctcactaacgaaaattgtatcttcataaa 32615430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21609997 - 21610067
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaacta 71  Q
    ||||| |||||||||||||||| ||||| |||||||| ||| ||||||||||| | | | |||||||||||    
T  21609997 ttatgcaaataaataagtttttattttaatttataagttcttactaacgaaaattatatattcataaacta 21610067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 23314763 - 23314818
Alignment:
Q  2 tatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgt 57  Q
    ||||||||||  |||| |||| ||||| |||||||||||| |||||||||||||||    
T  23314763 tatgtaaatatgtaagcttttattttaatttataagctctgactaacgaaaactgt 23314818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 23324930 - 23324985
Alignment:
Q  2 tatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgt 57  Q
    ||||||||||  |||| |||| ||||| |||||||||||| |||||||||||||||    
T  23324930 tatgtaaatatgtaagcttttattttaatttataagctctgactaacgaaaactgt 23324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17915083 - 17915017
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    |||| |||||||||||| |||| ||||| | |||||| ||| ||||||||||| ||| |||||||||    
T  17915083 ttatataaataaataagcttttattttaatctataagttctgactaacgaaaattgtattttcataa 17915017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29052470 - 29052422
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacga 50  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| |||||    
T  29052470 ttatgtaaataaataag-ttttattttaatttataagctctcacaaacga 29052422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15632042 - 15631974
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||||||||||| ||| |||||||||||    
T  15632042 ttatgtaaataaataagtttttattttaatttatatgctctcactaacgaaaattgtattttcataaac 15631974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 42591520 - 42591450
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaacta 71  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||| | |||||||||||    
T  42591520 ttatgtaaataaataagtttttattttaatttataagctttcactaacgaaaagtgtatcttcataaacta 42591450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15235109 - 15235177
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||||  |||| |||||||||    
T  15235109 ttatgtaaataaataagtttttattttaatttataagctcttactaacgaaaatggtttcttcataaac 15235177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 8410268 - 8410194
Alignment:
Q  4 tgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaaa 78  Q
    |||||||||||||| |||| ||||| |||| ||||||||||||||||||| ||| | |||||||||||| |||||    
T  8410268 tgtaaataaataagcttttattttaatttacaagctctcactaacgaaaattgtatcttcataaactactttaaa 8410194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17628373 - 17628441
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||||||||||||| |||| ||||| |||| ||||||||||||||||||| ||| | |||||||||    
T  17628373 ttatgtaaataaataagcttttattttaatttagaagctctcactaacgaaaattgtatcttcataaac 17628441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32497220 - 32497289
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||||||||||||  |||| ||||| |||||||||||||||||||||||| ||| |  |||||||||    
T  32497220 ttatgtaaataaataaacttttattttaatttataagctctcactaacgaaaattgtatcctcataaact 32497289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15791521 - 15791469
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||    
T  15791521 ttatgtaaataaataagcttttattttaatttataagctctcattaacgaaaa 15791469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8061957 - 8062024
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||| || ||||| ||| | ||||||||    
T  8061957 ttatgtaaataaataaatttttattttaatttataagctctcacaaatgaaaattgtatcttcataaa 8062024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16225645 - 16225594
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaa 52  Q
    |||| ||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  16225645 ttatttaaataaataagtttttgtgttaatttataagttctcactaacgaaa 16225594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5243352 - 5243422
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaacta 71  Q
    ||||||||||||||||| |||| ||||| |||||| ||||||  ||||||||| ||| | |||||||||||    
T  5243352 ttatgtaaataaataagcttttattttaatttatatgctctccgtaacgaaaattgtatcttcataaacta 5243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17814328 - 17814262
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||||||||||||||| |||| ||||| | |||||| ||| ||||||||||| ||| |||||||||    
T  17814328 ttatgtaaataaataagcttttattttaatctataagttctgactaacgaaaattgtattttcataa 17814262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 19395904 - 19395846
Alignment:
Q  9 ataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||| ||| | |||||||    
T  19395904 ataaataagtttttattttaatttataagctttcactaacgaaaattgtatcttcataa 19395846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 17349016 - 17348947
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||||| ||||| ||||||| |||||| ||  |||||  || ||||||||||||    
T  17349016 ttatgtaaataaataagtttttattttaatttataaactctcagtagagaaaatcgtattttcataaact 17348947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3116010 - 3116077
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| |||| |||| ||||| |||||||| ||| ||||||||||| ||| | ||||||||    
T  3116010 ttatgtaaataagtaagcttttattttaatttataagatcttactaacgaaaattgtatcttcataaa 3116077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 46473163 - 46473116
Alignment:
Q  55 tgttttttcataaactaccttaaagacctcacgaataataaattaaag 102  Q
    |||||||||||| ||||||||||| |||||| ||||||||||| ||||    
T  46473163 tgttttttcatatactaccttaaaaacctcatgaataataaataaaag 46473116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5347292 - 5347226
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||||||||||||||| |||| ||||| | |||||| ||| | ||||||||| ||| |||||||||    
T  5347292 ttatgtaaataaataagcttttattttaatctataagttctgattaacgaaaattgtattttcataa 5347226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22088357 - 22088403
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaa 47  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  22088357 ttatgtaaataaataaccttttattttaatttataagctctcactaa 22088403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22103247 - 22103181
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||||||||||| ||| |||| ||||| | |||||| ||| ||||||||||| ||| |||||||||    
T  22103247 ttatgtaaataaagaagcttttattttaatctataagttctaactaacgaaaattgtattttcataa 22103181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 9572853 - 9572902
Alignment:
Q  124 atttatttgtatacgctgttttgcataagctcaatccgaacggtccctaa 173  Q
    ||||||||| | | ||||||||||||||||||||||| ||||| ||||||    
T  9572853 atttatttgcaaaagctgttttgcataagctcaatccaaacgggccctaa 9572902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35275846 - 35275898
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||  |||| ||||| |||||||  |||||||||||||||    
T  35275846 ttatgtaaataaataaacttttattttaatttataaaatctcactaacgaaaa 35275898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29614331 - 29614262
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||||| ||| | ||||||||||    
T  29614331 ttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcataaact 29614262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 29830590 - 29830656
Alignment:
Q  4 tgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| | ||||||||||    
T  29830590 tgtaaataaataagtttttattttaatttataagttctcactaacgaaaattgtatcttcataaact 29830656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3645440 - 3645371
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||||| ||| | ||||| ||||    
T  3645440 ttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcatgaact 3645371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 20894640 - 20894571
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||| | ||||| |||||||||||||||||||||||| ||| | ||||| ||||    
T  20894640 ttatgtaaataaataagtttatattttaatttataagctctcactaacgaaaattgtatcttcatgaact 20894571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1516046 - 1516115
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||||| ||||| |||||||| ||||||||| ||||| ||| | || |||||||    
T  1516046 ttatgtaaataaataagtttttattttaatttataagttctcactaatgaaaattgtatctttataaact 1516115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42381208 - 42381277
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||| | | | ||||||||||    
T  42381208 ttatgtaaataattaagtttttattttaatttataagctcttactaacgaaaattttatcttcataaact 42381277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4257246 - 4257317
Alignment:
Q  1 ttatgtaaataaataagttt--ttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||||||||||||||||  || ||||| ||||||||||||||||| |||||| ||| | ||||||||||    
T  4257246 ttatgtaaataaataagtttgttttttttaatttataagctctcactagcgaaaattgtatcttcataaact 4257317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42409922 - 42409971
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacga 50  Q
    |||||||||||| ||||||||| ||||| |||||||||||| ||||||||    
T  42409922 ttatgtaaataattaagtttttattttaatttataagctcttactaacga 42409971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 42956127 - 42956179
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||| |||||||||||||||| | ||| |||||||| |||||||||||||||    
T  42956127 ttatgcaaataaataagtttttatgttaatttataagttctcactaacgaaaa 42956179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 37778268 - 37778205
Alignment:
Q  4 tgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||| |||| ||| | |||||||    
T  37778268 tgtaaataaataagcttttattttaatttataagttctcactaacaaaaattgtatcttcataa 37778205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 40240525 - 40240591
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||| ||||||||||| |||| | ||| || ||||||||||||||||||||| ||| | |||||||    
T  40240525 ttatgcaaataaataagcttttatcttaattcataagctctcactaacgaaaattgtatcttcataa 40240591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17752079 - 17752148
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||||||||||||  |||| | ||| |||||||| ||| ||||||||||| ||| | ||||||||||    
T  17752079 ttatgtaaataaataaacttttatgttaatttataagttcttactaacgaaaattgtatcttcataaact 17752148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19053399 - 19053468
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||||||||||||||  |||| | ||| |||||||| ||| ||||||||||| ||| | ||||||||||    
T  19053399 ttatgtaaataaataaacttttatgttaatttataagttcttactaacgaaaattgtatcttcataaact 19053468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40581024 - 40581089
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcata 66  Q
    ||||| ||||||||||| |||| | ||| || ||||| ||||||||||||||| ||||| ||||||    
T  40581024 ttatgcaaataaataagattttatgttaattcataagttctcactaacgaaaattgtttcttcata 40581089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10449115 - 10449063
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||| |||||||||||||||| | ||| || ||||| |||||||||||||||    
T  10449115 ttatgcaaataaataagtttttatcttaattcataagttctcactaacgaaaa 10449063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12004430 - 12004378
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||| ||||| ||||||| ||||||| || |||||    
T  12004430 ttatgtaaataaataagcttttattttaatttataaactctcacgaaagaaaa 12004378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24841334 - 24841386
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||| |||||| ||||| ||||| ||||||||||||||  ||||||||    
T  24841334 ttatgtaaacaaataaatttttattttaatttataagctctcaaaaacgaaaa 24841386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25341408 - 25341332
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactaccttaa 77  Q
    |||||||||||||||||||||| | ||| || | ||| | || |||||||||| | | | |||||||||||||||||    
T  25341408 ttatgtaaataaataagtttttatattaattcacaagttttccctaacgaaaattttatcttcataaactaccttaa 25341332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42615039 - 42615083
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcact 45  Q
    |||||||||||||||||||||  ||||| ||||||| ||||||||    
T  42615039 ttatgtaaataaataagttttcattttaatttataaactctcact 42615083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26003135 - 26003067
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||| | |||||||||    
T  26003135 ttatgtaaataaataagtttttattttaatttacaagctctcactaacgaaaattgtatcttcataaac 26003067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43268584 - 43268658
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaactacctt 75  Q
    ||||| ||||||||||| |||| | ||| |||||||| |||||||||| |||| ||| | |||||||||||||||    
T  43268584 ttatgaaaataaataagcttttatgttaatttataagttctcactaacaaaaattgtatcttcataaactacctt 43268658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4728982 - 4728930
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||| ||||| |||||||||||| ||||| |||||    
T  4728982 ttatgtaaataaataagcttttattttaatttataagctcttactaaggaaaa 4728930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38461228 - 38461299
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataag--ctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||||| ||||| ||||||||  ||||||||||| |||| | | | ||||||||||    
T  38461228 ttatgtaaataaataagtttttattttaatttataagttctctcactaacaaaaattatatcttcataaact 38461299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 20458506 - 20458572
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||||||||||||||| |||| ||||| | |||||| ||| || |||||||| ||| |||||||||    
T  20458506 ttatgtaaataaataagcttttattttaatctataagttctgaccaacgaaaattgtattttcataa 20458572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41419639 - 41419573
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||| |||||||||||||||| | ||| || ||||| ||||||||||||||| ||| | |||||||    
T  41419639 ttatgaaaataaataagtttttatgttaattgataagttctcactaacgaaaattgtatcttcataa 41419573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29659198 - 29659129
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||| |||||||||||||||| | ||| || ||||| ||||||||| ||||| |||  |||||||||||    
T  29659198 ttatgcaaataaataagtttttatcttaattcataagttctcactaatgaaaattgtactttcataaact 29659129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 11991436 - 11991376
Alignment:
Q  7 aaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataa 67  Q
    ||||||||||| |||| | ||| ||||||| |||||||||||||||| ||| | |||||||    
T  11991436 aaataaataagcttttatgttaatttataaactctcactaacgaaaattgtatgttcataa 11991376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16722164 - 16722096
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    |||||||||||||| |  |||| | ||| ||||||| |||||||||||||||| ||| | |||||||||    
T  16722164 ttatgtaaataaatcaacttttatcttaatttataaactctcactaacgaaaagtgtatcttcataaac 16722096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29418700 - 29418752
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||| |||||||||||||||| | ||| |||||||  |||||||||||||||    
T  29418700 ttatgcaaataaataagtttttatcttaatttataaattctcactaacgaaaa 29418752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 11988334 - 11988266
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||||||||||| | |||| ||||| |||||||||||||||||||||||| ||| | |||||||||    
T  11988334 ttatgtaaataaatatgcttttattttaatttataagctctcactaacgaaaattgtatcttcataaac 11988266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 12607217 - 12607149
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||||| ||| ||| | |||||||||    
T  12607217 ttatgtaaataaataagcttttattttaatttataagctctcactaacggaaattgtatcttcataaac 12607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38338799 - 38338851
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  38338799 ttatgtaaataaataagtttttattttaatttataagttctcactaacgaaaa 38338851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19925695 - 19925628
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||||||||| ||| ||||| ||| |||||||||||||||||||| ||| | ||||||||    
T  19925695 ttatgtaaataaataagtatttattttaatttgtaagctctcactaacgaaaattgtatcttcataaa 19925628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 218202 - 218269
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| ||||||||| ||||| |||||||||| | ||||||||||| ||| | ||||||||    
T  218202 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaa 218269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 694762 - 694829
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| ||||||||| ||||| |||||||||| | ||||||||||| ||| | ||||||||    
T  694762 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaa 694829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 698971 - 699038
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| ||||||||| ||||| |||||||||| | ||||||||||| ||| | ||||||||    
T  698971 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaa 699038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 731825 - 731892
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| ||||||||| ||||| |||||||||| | ||||||||||| ||| | ||||||||    
T  731825 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaa 731892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 855721 - 855788
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||| ||||||||| ||||| |||||||||| | ||||||||||| ||| | ||||||||    
T  855721 ttatgtaaataagtaagtttttattttaatttataagctattactaacgaaaattgtatcttcataaa 855788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29218199 - 29218269
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaacta 71  Q
    ||||||||||| |||||||||| ||||| ||||||| |||||||||| ||||| | | | |||||||||||    
T  29218199 ttatgtaaatacataagtttttattttaatttataaactctcactaatgaaaattatatcttcataaacta 29218269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 16926676 - 16926745
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    ||||| |||||||||||||||| | ||| |||||||| ||||||||||| ||| ||||| || |||||||    
T  16926676 ttatgcaaataaataagtttttatgttaatttataagttctcactaacggaaattgtttctttataaact 16926745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37410861 - 37410930
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||||| | ||||| |||||||| ||| ||||||||||| ||| | ||||| ||||    
T  37410861 ttatgtaaataaataagtttatattttaatttataagttcttactaacgaaaattgtatcttcatgaact 37410930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 38195620 - 38195555
Alignment:
Q  5 gtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaact 70  Q
    |||||||||||||||||| ||||| ||||||| |||||| |||| |||| ||| ||| ||||||||    
T  38195620 gtaaataaataagtttttattttaatttataaactctcattaacaaaaattgtatttccataaact 38195555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3664273 - 3664221
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||| |||||| ||||| |||||||||||||  |||||||||    
T  3664273 ttatgtaaataaataggtttttattttaatttataagctctcgttaacgaaaa 3664221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42102244 - 42102192
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||| ||||| ||||||| |||||| |||||||||    
T  42102244 ttatgtaaataaataagcttttattttaatttataacctctcattaacgaaaa 42102192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 42363265 - 42363333
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaac 69  Q
    ||||||||||||||||| |||| ||||| |||| ||| |||||||||| |||| ||| | |||||||||    
T  42363265 ttatgtaaataaataagcttttattttaatttaaaagttctcactaacaaaaattgtatcttcataaac 42363333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32751276 - 32751209
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    |||||||||||||||| ||||| ||||| ||||||| || | ||||||||||| ||| |||| |||||    
T  32751276 ttatgtaaataaataaatttttattttaatttataaacttttactaacgaaaattgtatttttataaa 32751209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35055559 - 35055493
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaactgttttttcataaa 68  Q
    ||||||||||||||||| |||| ||| |||  ||||||||||||||||||||| ||| | ||||||||    
T  35055559 ttatgtaaataaataagcttttatttaattc-ataagctctcactaacgaaaattgtatcttcataaa 35055493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35123199 - 35123154
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcacta 46  Q
    |||| |||||||||||| |||| ||||| |||||||||||||||||    
T  35123199 ttatataaataaataagcttttattttaatttataagctctcacta 35123154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29713315 - 29713267
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacg 49  Q
    ||||||||||||||||| |||| ||||| |||||| |||||||| ||||    
T  29713315 ttatgtaaataaataagcttttattttaatttatatgctctcaccaacg 29713267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 32212963 - 32213015
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||| ||||||||||| |||| | |||||||||||| ||||||||| |||||    
T  32212963 ttatgcaaataaataagcttttatgttattttataagttctcactaatgaaaa 32213015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38401 - 38453
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||    
T  38401 ttatgtaaataaataagcttttattttaatttataagctctcgctaacgaaaa 38453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 242588 - 242640
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    ||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||    
T  242588 ttatgtaaataaataggtttttattttaatttataagctctcgctaacgaaaa 242640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 59405 - 59367
Alignment:
Q  1 ttatgtaaataaataagtttttgttttattttataagct 39  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  59405 ttatgtaaataaataagtttttattttaatttataagct 59367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 40625 - 40674
Alignment:
Q  4 tgtaaataaataagtttttgttttattttataagctctcactaacgaaaa 53  Q
    |||||||||||||| |||| ||||| |||||||||||||  |||||||||    
T  40625 tgtaaataaataagattttattttaatttataagctctccttaacgaaaa 40674  T

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