View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_high_18 (Length: 309)

Name: NF1723_high_18
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_high_18
NF1723_high_18
[»] chr4 (34 HSPs)
chr4 (14-291)||(27570160-27570437)
chr4 (27-291)||(27420170-27420437)
chr4 (16-283)||(27425567-27425833)
chr4 (16-283)||(27566070-27566336)
chr4 (16-282)||(27412427-27412690)
chr4 (17-275)||(27415379-27415637)
chr4 (50-286)||(27423010-27423246)
chr4 (67-283)||(27563465-27563689)
chr4 (154-278)||(27444918-27445033)
chr4 (27-78)||(27516917-27516968)
chr4 (226-278)||(27554273-27554325)
chr4 (158-278)||(27557394-27557505)
chr4 (27-78)||(27466595-27466646)
chr4 (221-281)||(27526233-27526293)
chr4 (27-78)||(27473668-27473719)
chr4 (27-89)||(27557266-27557329)
chr4 (155-200)||(27498326-27498371)
chr4 (246-291)||(27506682-27506727)
chr4 (221-281)||(27469419-27469479)
chr4 (221-281)||(27486942-27487002)
chr4 (226-278)||(27498379-27498431)
chr4 (221-281)||(27513897-27513957)
chr4 (218-265)||(27585644-27585691)
chr4 (28-77)||(27431468-27431518)
chr4 (27-69)||(27445116-27445158)
chr4 (241-274)||(27431276-27431309)
chr4 (246-291)||(27478994-27479039)
chr4 (246-291)||(27486054-27486099)
chr4 (155-200)||(27501228-27501273)
chr4 (221-278)||(27501276-27501333)
chr4 (155-200)||(27516793-27516838)
chr4 (221-281)||(27476646-27476706)
chr4 (27-70)||(27508119-27508163)
chr4 (221-281)||(27523524-27523584)
[»] chr3 (6 HSPs)
chr3 (228-278)||(38024999-38025049)
chr3 (228-278)||(38031451-38031501)
chr3 (228-277)||(50911994-50912043)
chr3 (241-278)||(50909939-50909976)
chr3 (228-281)||(55084752-55084805)
chr3 (241-277)||(50904917-50904953)
[»] chr8 (1 HSPs)
chr8 (228-278)||(21607420-21607470)
[»] chr5 (1 HSPs)
chr5 (240-291)||(1756868-1756919)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 291
Target Start/End: Complemental strand, 27570437 - 27570160
Alignment:
Q  14 attattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570437 attattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattg 27570338  T
Q  114 cttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||    
T  27570337 cttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtccccctggtatcatcagaagggcatctttttctg 27570238  T
Q  214 gaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570237 gaaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 27570160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 27420170 - 27420437
Alignment:
Q  27 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagttt-- 124  Q
    ||||||||||||| | || ||||||||||| ||||||||||| |||||||||||||||||||||| || | |||||||||||  ||||||||||||||      
T  27420170 ctatatatattcaaggctacaagcatttaggaccaacacaaaacattcacatcctaaagcattcagatttcaaaaacttggtctttgcttaaaagtttat 27420269  T
Q  125 -ttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatc 223  Q
     ||||||  ||||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||    
T  27420270 tttatttttaaaccatttcttctaaagttttaacacatacaacaatgggttttcgtttccctggtatcatcagaaaggcatcattttctgcaaaccgatc 27420369  T
Q  224 agcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 291  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27420370 agcttcaaaatctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 27420437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 27425567 - 27425833
Alignment:
Q  16 tattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgct 115  Q
    |||||| ||| ||||||||||| | | || ||||||||||| ||||||||||||||||||||||||||| ||||| ||| | ||||||||| || |||||    
T  27425567 tattctcttatctatatatattaaaggctacaagcatttaggaccaacacaaatcattcacatcctaaaccattccaatttcaaaaacttgcttcttgct 27425666  T
Q  116 taaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgga 215  Q
    || | || ||| |||||||   | | |||||||||| ||||||||||||| |||||||||||||||  ||||||||||||||| || ||| ||||||| |    
T  27425667 tacaggtctttttttaaaactgaat-attctcaagttttaacacatacaacaatgggttttcgttttgctggtatcatcagaaaggcatcattttctgca 27425765  T
Q  216 aaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaaca 283  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27425766 aaccgatcagcttcgaaagctgtggacgtgccaaagggatatcttgcagtatatgttggagagaaaca 27425833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 27566336 - 27566070
Alignment:
Q  16 tattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctg-aaaaacttggttattgc 114  Q
    |||||||||| |||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||| ||||| ||| |  ||||||||| || ||||    
T  27566336 tattcttttatctatatatattcatggttacaagcatttaggaccaacacaaatcattcacatcctaaaccattccaatttccaaaaacttgcttcttgc 27566237  T
Q  115 ttaaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgg 214  Q
    ||| |||| ||| ||  ||||||| || ||||||||| | ||| ||||||  ||||||||||||||||||| |||| |||| ||||| ||| |||  |||    
T  27566236 ttacaagtctttttt--aaaaccaatttttctcaagtttgaacgcatacagcaatgggttttcgtttccctagtattatcaaaagggcatcatttgttgg 27566139  T
Q  215 aaaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaaca 283  Q
    ||||||| ||| |||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  27566138 aaaccgagcagtttcaaaagttgtggacgtgccaaagggatatcttgcagtgtatgttggagagaaaca 27566070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 27412427 - 27412690
Alignment:
Q  16 tattcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgct 115  Q
    |||||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||| ||||  ||| | ||||||||| || |||||    
T  27412427 tattcttttatctatatatattcatggctgcaagcatttaggacaaacacaaatcattcacatcctaaaccattttaatttcaaaaacttgcttcttgct 27412526  T
Q  116 taaaagtttttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgga 215  Q
    || |||| ||  |   | ||||||||    | ||||  ||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |    
T  27412527 tacaagtcttcct---acaaccatttgaatttaagttctaacacatacaaaaatgggttttcgtttctctggtatcatcagaagggcatcattttctgca 27412623  T
Q  216 aaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaac 282  Q
    |||||| ||| |||||||||||| ||  |||||||||||||| |||| || ||||||||||||||||    
T  27412624 aaccgagcagtttcaaaagctgttgacatgccaaagggatatattgccgtgtatgttggagagaaac 27412690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 27415379 - 27415637
Alignment:
Q  17 attcttttaactatatatattcatgactgcaagcatttagaaccaacacaaatcattcacatcctaaagcattcaaatctgaaaaacttggttattgctt 116  Q
    ||||||| | |||| |||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||  | | ||||||||| ||||||||     
T  27415379 attctttcatctatttatattcaaggctacaagcatttaggaccaacacaaaacattcacatcctaaagcattcagttttcaaaaacttg-ttattgcta 27415477  T
Q  117 aaaagttt-ttatttaaaaaccatttattctcaagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctgga 215  Q
     ||  | | |||||| ||||| |||| ||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||| |  ||| ||||||| |    
T  27415478 caatttatcttattttaaaacaatttcttctcaagttttaacacatacaacaatgggttttcgtgtccctagtatcatcagaaagtcatcattttctgca 27415577  T
Q  216 aaccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttgga 275  Q
    | ||||  |  |||||||| |||||||||||||||||||||||||||||| |||||||||    
T  27415578 agccgagtaatttcaaaagttgtggatgtgccaaagggatatcttgcagtgtatgttgga 27415637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 286
Target Start/End: Original strand, 27423010 - 27423246
Alignment:
Q  50 catttagaaccaacacaaatcattcacatcctaaag-cattca-aatctgaaaaacttggttattgcttaaaagtttttatttaaaaaccatttattctc 147  Q
    |||||||||||||| | ||||||||||||||||||  ||||   ||| |||||||||||| ||||||||  || |||||  |  ||||||| || ||||     
T  27423010 catttagaaccaactctaatcattcacatcctaaaaacatttgcaatttgaaaaacttggctattgcttttaatttttttct--aaaaccacttcttcta 27423107  T
Q  148 aagtgttaacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgcc 247  Q
    |  | ||||||||||||| ||||||| | |||||| ||||||| ||||||||||  || ||||||| ||||||| ||   |||||||||| |||  ||||    
T  27423108 actttttaacacatacaacaatgggtatccgtttctctggtattatcagaagggcctcattttctgcaaaccgagcaatatcaaaagctgcggacatgcc 27423207  T
Q  248 aaagggatatcttgcagtatatgttggagagaaacagac 286  Q
    |||| |||||||||| |||||||||||| ||||||||||    
T  27423208 aaagagatatcttgctgtatatgttggatagaaacagac 27423246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 283
Target Start/End: Complemental strand, 27563689 - 27563465
Alignment:
Q  67 aatcattcacatcctaaagcattcaaatctgaaaaacttggttattgcttaaaagtt---------tttatttaaaaaccatttattctcaagtgttaac 157  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||         ||| ||||||||    || ||||||||| |||||    
T  27563689 aatcattcacatcctaaagcattcaaatttcaaaaacttggttattgcttaaaagtttttttgttctttttttaaaaa----ttcttctcaagttttaac 27563594  T
Q  158 acatacaaaaatgggttttcgtttccctggtatcatcagaagg---gaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggga 254  Q
    |||  ||  ||||||||||||||| ||||||||||| ||||||     ||| ||| ||  || |||||||| | |||||| |||||| |||||||||||     
T  27563593 acactcagcaatgggttttcgtttacctggtatcattagaaggtcatcatcgtttacttcaagccgatcagttacaaaagttgtggacgtgccaaagggc 27563494  T
Q  255 tatcttgcagtatatgttggagagaaaca 283  Q
    ||||||||||| || |||||||| |||||    
T  27563493 tatcttgcagtgtacgttggagataaaca 27563465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 27445033 - 27444918
Alignment:
Q  154 taacacatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaaggg 253  Q
    |||||||||||| |||||||||||||||  | ||||||||||||||||         ||| ||||| | || |||||||||  |||||||||||||||||    
T  27445033 taacacatacaagaatgggttttcgtttaaccggtatcatcagaaggg---------ctgcaaaccaaacatcttcaaaaggcgtggatgtgccaaaggg 27444943  T
Q  254 atatcttgcagtatatgttggagag 278  Q
    ||||||||||||||| |||||||||    
T  27444942 atatcttgcagtatacgttggagag 27444918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 27516968 - 27516917
Alignment:
Q  27 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacat 78  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  27516968 ctatatatattcatggctgcaagcatttagcaccaacacaaatcattcacat 27516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 27554273 - 27554325
Alignment:
Q  226 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 278  Q
    |||||||||  |||||||||||||||||||| |||||||||||||||||||||    
T  27554273 cttcaaaaggagtggatgtgccaaagggataccttgcagtatatgttggagag 27554325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 27557394 - 27557505
Alignment:
Q  158 acatacaaaaatgggttttcgtttccctggtatcatcagaagggaatctttttctggaaaccgatcagcttcaaaagctgtggatgtgccaaagggatat 257  Q
    ||||| || ||||||||||||||| |||| |||||||||||||| |||         ||||| | || ||||||| | |||||||||||||| |||||||    
T  27557394 acatataagaatgggttttcgtttacctgttatcatcagaagggcatc---------aaaccaagcatcttcaaagggtgtggatgtgccaaggggatat 27557484  T
Q  258 cttgcagtatatgttggagag 278  Q
    ||||| |||||||||||||||    
T  27557485 cttgccgtatatgttggagag 27557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 27466595 - 27466646
Alignment:
Q  27 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacat 78  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  27466595 ctatatatattcatggctgcaagcctttagcaccaacacaaatcattcacat 27466646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 27526293 - 27526233
Alignment:
Q  221 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaa 281  Q
    |||| ||||||||| ||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  27526293 atcatcttcaaaaggtgtcgatgttccaaagggatatctagcagtgtatgttggagagaaa 27526233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 27473668 - 27473719
Alignment:
Q  27 ctatatatattcatgactgcaagcatttagaaccaacacaaatcattcacat 78  Q
    ||||||||||||||| |||||||| ||||| | |||||||||||||||||||    
T  27473668 ctatatatattcatggctgcaagcctttagcatcaacacaaatcattcacat 27473719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 27557266 - 27557329
Alignment:
Q  27 ctatatatattcatgactgcaagcatttagaaccaacac-aaatcattcacatcctaaagcatt 89  Q
    ||||||||||||||   ||||||||||||| |||||||| |||||||||||| |||||||||||    
T  27557266 ctatatatattcatagttgcaagcatttaggaccaacacaaaatcattcacaacctaaagcatt 27557329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 27498326 - 27498371
Alignment:
Q  155 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 200  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||    
T  27498326 aacacatacgaaaatgggttttcgtttaccaggtatcatcagaagg 27498371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 27506682 - 27506727
Alignment:
Q  246 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 291  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||    
T  27506682 ccaaagggctatgttgcagtatatgtcggagagaaacagacgcggt 27506727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 27469419 - 27469479
Alignment:
Q  221 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaa 281  Q
    |||| |||||||||||||||| || |||||||||||||| ||||| || || |||||||||    
T  27469419 atcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaa 27469479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 27486942 - 27487002
Alignment:
Q  221 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaa 281  Q
    |||| |||||||||||||||| || |||||||||||||| ||||| || || |||||||||    
T  27486942 atcatcttcaaaagctgtggacgttccaaagggatatctagcagtgtacgtaggagagaaa 27487002  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 27498379 - 27498431
Alignment:
Q  226 cttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 278  Q
    |||||||||  |||||  |||||||||||||||| ||||||||||||||||||    
T  27498379 cttcaaaaggcgtggacatgccaaagggatatctagcagtatatgttggagag 27498431  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 27513957 - 27513897
Alignment:
Q  221 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaa 281  Q
    |||| ||||||||||||| || |||||||| |||||||| ||||| ||||| |||||||||    
T  27513957 atcatcttcaaaagctgttgacgtgccaaaaggatatctagcagtgtatgtaggagagaaa 27513897  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 27585644 - 27585691
Alignment:
Q  218 ccgatcagcttcaaaagctgtggatgtgccaaagggatatcttgcagt 265  Q
    |||||||| |||||||| |||||| ||||||||||||||||| |||||    
T  27585644 ccgatcagtttcaaaagttgtggacgtgccaaagggatatctcgcagt 27585691  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 27431518 - 27431468
Alignment:
Q  28 tatatatattcatgactgcaagcatttagaaccaacacaa-atcattcaca 77  Q
    |||||||||||||| |||||||| |||| ||||||||||| ||||||||||    
T  27431518 tatatatattcatggctgcaagcttttataaccaacacaatatcattcaca 27431468  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 27445158 - 27445116
Alignment:
Q  27 ctatatatattcatgactgcaagcatttagaaccaacacaaat 69  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||    
T  27445158 ctatatatattaatgactgcaagcattaagaaccaactcaaat 27445116  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 27431309 - 27431276
Alignment:
Q  241 atgtgccaaagggatatcttgcagtatatgttgg 274  Q
    ||||||||||||||||| ||||||||||||||||    
T  27431309 atgtgccaaagggatatattgcagtatatgttgg 27431276  T

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Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 27479039 - 27478994
Alignment:
Q  246 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 291  Q
    |||||||| ||| ||||||| ||||||||||||||||||| |||||    
T  27479039 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggt 27478994  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 27486099 - 27486054
Alignment:
Q  246 ccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 291  Q
    |||||||| ||| ||||||| ||||||||||||||||||| |||||    
T  27486099 ccaaagggctatgttgcagtgtatgttggagagaaacagaagcggt 27486054  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 27501228 - 27501273
Alignment:
Q  155 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 200  Q
    ||||||||||| ||||||||||||||| ||||||||| | ||||||    
T  27501228 aacacatacaagaatgggttttcgtttacctggtatcctaagaagg 27501273  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 27501276 - 27501333
Alignment:
Q  221 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 278  Q
    |||| ||||||||| ||| || || |||||||||| ||| ||||||||||||||||||    
T  27501276 atcatcttcaaaaggtgtcgaggttccaaagggatgtctagcagtatatgttggagag 27501333  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 27516838 - 27516793
Alignment:
Q  155 aacacatacaaaaatgggttttcgtttccctggtatcatcagaagg 200  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| ||||    
T  27516838 aacacatacaacaatgggttttcgtttacctagtatcatcaaaagg 27516793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 27476646 - 27476706
Alignment:
Q  221 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaa 281  Q
    |||| |||||||| | ||||| || |||||||||||||| ||||| |||||||| ||||||    
T  27476646 atcatcttcaaaaaccgtggacgttccaaagggatatctagcagtgtatgttggtgagaaa 27476706  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 27508163 - 27508119
Alignment:
Q  27 ctatatatattcatgactgc-aagcatttagaaccaacacaaatc 70  Q
    |||||||||||||||||||| || ||||| |||||||||||||||    
T  27508163 ctatatatattcatgactgctaaacatttcgaaccaacacaaatc 27508119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 27523584 - 27523524
Alignment:
Q  221 atcagcttcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaa 281  Q
    |||| |||||||||||||||| || |||||||| ||||| ||||| || || |||||||||    
T  27523584 atcatcttcaaaagctgtggacgttccaaagggctatctagcagtgtacgtaggagagaaa 27523524  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 38025049 - 38024999
Alignment:
Q  228 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 278  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  38025049 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagag 38024999  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 38031501 - 38031451
Alignment:
Q  228 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 278  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  38031501 tcaaaagctgtgaatgtaccaaagggctatcttgcagtatatgttggagag 38031451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 277
Target Start/End: Complemental strand, 50912043 - 50911994
Alignment:
Q  228 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggaga 277  Q
    ||||||| |||| ||||||||||||| |||||||| ||||||||||||||    
T  50912043 tcaaaagttgtgaatgtgccaaagggctatcttgcggtatatgttggaga 50911994  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 50909939 - 50909976
Alignment:
Q  241 atgtgccaaagggatatcttgcagtatatgttggagag 278  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  50909939 atgtgccaaagggttatcttgcagtgtatgttggagag 50909976  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 55084752 - 55084805
Alignment:
Q  228 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagagaaa 281  Q
    |||||| ||||| |||||||||| || | ||||||||| |||||||||||||||    
T  55084752 tcaaaatctgtgaatgtgccaaaagggtgtcttgcagtgtatgttggagagaaa 55084805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 50904953 - 50904917
Alignment:
Q  241 atgtgccaaagggatatcttgcagtatatgttggaga 277  Q
    ||||||||||||||||||||||||| || ||||||||    
T  50904953 atgtgccaaagggatatcttgcagtgtacgttggaga 50904917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 21607470 - 21607420
Alignment:
Q  228 tcaaaagctgtggatgtgccaaagggatatcttgcagtatatgttggagag 278  Q
    ||||||| |||| |||| ||||||||||||||||| |||||||||||||||    
T  21607470 tcaaaagttgtgaatgtaccaaagggatatcttgcggtatatgttggagag 21607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 1756919 - 1756868
Alignment:
Q  240 gatgtgccaaagggatatcttgcagtatatgttggagagaaacagacgcggt 291  Q
    ||||| |||||||| |||||||||||  |||||||||||||||||| |||||    
T  1756919 gatgtaccaaagggctatcttgcagtgaatgttggagagaaacagaagcggt 1756868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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