View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723_high_20 (Length: 303)
Name: NF1723_high_20
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 135 - 284
Target Start/End: Original strand, 10601191 - 10601341
Alignment:
| Q |
135 |
agatacatgcatcggttcaaatgcaaaggttgtgagtgggaaattactaaaaattgaacttagattgctgggtaggaaaacactaacaaaaatgaaatgc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
10601191 |
agatacatgcatcggttcaaatgcaaaggttgtgagtgggaaattactaaaaattgaacttagattgctgagtaggaaaacactaacaaaaattaaatgc |
10601290 |
T |
|
| Q |
235 |
ttaggtgat-ggggaaaagattatgttagaattaggttaaacaattgcttg |
284 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10601291 |
ttaggtgatgggggaaaagattatgttagaattaggttaaacaattgcttg |
10601341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 10599828 - 10599950
Alignment:
| Q |
17 |
aatatgggcatgggaaagagagaagaataaatatatgtgcatggagaacaataacaaatcacgttggaaacatagaaatgaggtcaaggtatattaaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599828 |
aatatgggcatgggaaagagagaagaataaatatatgtgcatggagaacactaacaaatcacgttggaaacatagaaatgaggtcaaggtatattaaatg |
10599927 |
T |
|
| Q |
117 |
tcatcattcagcctattgagata |
139 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
10599928 |
tcatcattcagcctcttgagata |
10599950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 22625172 - 22625431
Alignment:
| Q |
20 |
atgggcatgggaaagagagaagaataaatatatgtgcatggagaacaataacaaatcacgttggaaacatagaaatgaggtcaaggtatattaaatgtca |
119 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||| | |||||||||| ||| |||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
22625172 |
atgggcatgggaaagatagtagaataaa---atgtgcatgaa--acaataacaa-tcatgttggaaacatagaaatgaggttagtgtatattaaatgcaa |
22625265 |
T |
|
| Q |
120 |
tcattcagcctattgagatacatgcatcggttcaaatgcaaaggttgtgagtgggaaattactaaaaattgaacttagattgctgggtaggaaaacacta |
219 |
Q |
| |
|
||||||||| ||||| ||||||||| || | ||||||||||| ||| | |||||||| ||||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
22625266 |
tcattcagctgtttgaggtacatgcataggcac-aatgcaaaggtcgtgggagggaaatt--taaaaattgaactcaacttgctgagtaggaaagcacta |
22625362 |
T |
|
| Q |
220 |
--acaaaaatgaaatgcttaggtgatg--gggaaaagattatgttagaattaggttaaacaattgcttg |
284 |
Q |
| |
|
||||||| ||||| | ||||||| ||||||| |||| |||| ||||||| || |||||||||| |
|
|
| T |
22625363 |
tgtcaaaaattaaatgatggggtgatggagggaaaatattaggttaaaattagggtatccaattgcttg |
22625431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 283
Target Start/End: Complemental strand, 29280235 - 29280112
Alignment:
| Q |
161 |
aggttgtgagtgggaaattactaaaaattgaacttagattgctgggtaggaaaa-cactaacaaaaatgaaatgcttaggtgat--ggggaaaagattat |
257 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||| ||| || ||| ||||| ||||||| ||||| | ||||||||||||| ||||||| |||| |
|
|
| T |
29280235 |
aggttgtgggagggaaatt--taaaaattgaacttagcttgatgagtacgaaaagcactaacgaaaattacatgcttaggtgattgagggaaaatattag |
29280138 |
T |
|
| Q |
258 |
gttagaattaggttaaacaattgctt |
283 |
Q |
| |
|
|||| ||||||| | |||||| |||| |
|
|
| T |
29280137 |
gttaaaattagggtgaacaatagctt |
29280112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 38955796 - 38955869
Alignment:
| Q |
199 |
ttgctgggtaggaaaa-cactaacaaaaatgaaatgcttaggtgatgg--ggaaaagattatgttagaattagg |
269 |
Q |
| |
|
|||||| ||||||||| || |||||||||| |||||||| |||||||| |||||| |||| |||||||||||| |
|
|
| T |
38955796 |
ttgctgagtaggaaaagcattaacaaaaattaaatgcttgggtgatggagggaaaatattaggttagaattagg |
38955869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 6254078 - 6253863
Alignment:
| Q |
20 |
atgggcatgggaaagagagaagaataaatatatgtgcatggagaacaataacaaatcacgttggaaacatagaaatgaggtcaaggtatattaaatgtca |
119 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6254078 |
atgggcatggtaaagagagtagaataa---tatgtgcatggaaaacaataacaa-tcatgttggaaacatagaaatgaggtcaaggtagattaaatgtca |
6253983 |
T |
|
| Q |
120 |
tcattcagcctattgagatacatgcatcggttca-aatgcaaaggttgtgagtgggaaattactaaaaattgaacttagattgctgggtaggaaaacact |
218 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
6253982 |
tcattcagcctcttgagatacatgcattggttcagaatgcaaaggttgtgggtgggaaattactaaaaattgaacttagattggtgagtaggaaagcact |
6253883 |
T |
|
| Q |
219 |
-aacaaaaatgaaatgctta |
237 |
Q |
| |
|
||||||||| ||| ||||| |
|
|
| T |
6253882 |
aaacaaaaattaaaggctta |
6253863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 6253472 - 6253407
Alignment:
| Q |
221 |
caaaaatgaaatgcttaggtgatgg--ggaaaagattatgttagaattaggttaaacaattgcttg |
284 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
6253472 |
caaaaattaaatgtttaggtgatggagggaaaaatttaggttagaattaggttaaacaattgcttg |
6253407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 21762309 - 21762089
Alignment:
| Q |
18 |
atatgggcatgggaaagagagaagaataaatatatgtgcatggagaacaataacaaatcacgttggaaacatagaaatgaggtcaaggtatattaaatgt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
21762309 |
atatgggcatgggaaagagagtagaataa---tatgtgcatc-agaacaataacag-tcacgttggaaatatagaaatgaggatagggtatattaaatgt |
21762215 |
T |
|
| Q |
118 |
catcattcagcctattgagatacatgcatcggttca-aatgcaaaggttgtgagtgggaaattactaaaaattgaacttagattgctgggtaggaaaa-c |
215 |
Q |
| |
|
||||||||| | | || | |||||||||| || |||||||| |||||| | |||||||| |||||||||||||||| ||| || ||||||||| | |
|
|
| T |
21762214 |
catcattcacattccttaggtgcatgcatcgg--cagaatgcaaatgttgtgggagggaaatt--taaaaattgaacttagcttgatgagtaggaaaagc |
21762119 |
T |
|
| Q |
216 |
actaacaaaaatgaaatgcttaggtgatgg |
245 |
Q |
| |
|
|||||| ||||| |||| || |||||||| |
|
|
| T |
21762118 |
actaacgaaaattaaataattgggtgatgg |
21762089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 826573 - 826676
Alignment:
| Q |
18 |
atatgggcatgggaaagagagaagaataaatatatgtgcatggagaacaataacaaatcacgttggaaacatagaaatgaggtcaaggtatattaaatgt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
826573 |
atatgggcatgggaaagagagtagaataa---tatgtgcatc-agaacaataacag-tcacgttggaaatatagaaatgaggatagggtatattaaatgt |
826667 |
T |
|
| Q |
118 |
catcattca |
126 |
Q |
| |
|
||||||||| |
|
|
| T |
826668 |
catcattca |
826676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 42655904 - 42655799
Alignment:
| Q |
182 |
taaaaattgaacttagattgctgggtagg-aaaacactaacaaaaatgaaatgcttaggtgatg--gggaaaagattatgttagaattaggttaaacaat |
278 |
Q |
| |
|
|||||||||||||||| ||| || ||||| |||||||||| ||||| |||||||| ||||||| ||||||| ||||||||| ||||||| | |||||| |
|
|
| T |
42655904 |
taaaaattgaacttagcttgatgagtaggaaaaacactaatcaaaattaaatgcttgggtgatgaagggaaaatattatgttaaaattagggtgaacaat |
42655805 |
T |
|
| Q |
279 |
tgcttg |
284 |
Q |
| |
|
||||| |
|
|
| T |
42655804 |
agcttg |
42655799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 52041323 - 52041428
Alignment:
| Q |
182 |
taaaaattgaacttagattgctgggtaggaaaa-cactaacaaaaatgaaatgcttaggtgatgg--ggaaaagattatgttagaattaggttaaacaat |
278 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||| ||||||| ||||| |||||||| |||||||| |||||| |||| |||| ||||||| | |||||| |
|
|
| T |
52041323 |
taaaaattgaacttagcttgatgagtaggaaaagcactaaccaaaattaaatgcttgggtgatggaaggaaaatattaggttaaaattagggtgaacaat |
52041422 |
T |
|
| Q |
279 |
tgcttg |
284 |
Q |
| |
|
||||| |
|
|
| T |
52041423 |
agcttg |
52041428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 284
Target Start/End: Original strand, 22424287 - 22424414
Alignment:
| Q |
158 |
caaaggttgtgagtgggaaattactaaaaattgaacttagattgctgggtaggaaaac-actaacaaaaatgaaatgcttaggtgatg--gggaaaagat |
254 |
Q |
| |
|
||||||||||| | |||||||| ||||||| ||||||| || || ||||||||| |||||||||||| ||||| |||||||||| ||||||| || |
|
|
| T |
22424287 |
caaaggttgtgggagggaaattc--aaaaattcaacttagcttaatgagtaggaaaagtactaacaaaaattaaatgtttaggtgatggagggaaaatat |
22424384 |
T |
|
| Q |
255 |
tatgttagaattaggttaaacaattgcttg |
284 |
Q |
| |
|
|| |||| ||||||| | |||||| ||||| |
|
|
| T |
22424385 |
taggttaaaattagggtgaacaatagcttg |
22424414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 2555266 - 2555196
Alignment:
| Q |
24 |
gcatgggaaagagagaagaataaatatatgtgcatggagaacaataacaaatcacgttggaaacatagaaatgagg |
99 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||| |||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
2555266 |
gcatgggaaagagagtagaataa---tatgtgcatg-agaagaataacaa-tcatattggaaacatagaaatgagg |
2555196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 284
Target Start/End: Complemental strand, 9451392 - 9451268
Alignment:
| Q |
161 |
aggttgtgagtgggaaattactaaaaattgaacttagattgctgggtaggaaaa-cactaacaaaaatgaaatgcttaggtgatg--gggaaaagattat |
257 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||| ||| || ||| ||||| ||||||| ||||| |||||||| ||||||| ||||||| |||| |
|
|
| T |
9451392 |
aggttgtgggagggaaatt--taaaaattgaacttagcttgatgagtacgaaaagcactaacgaaaattaaatgcttgggtgatggagggaaaatattag |
9451295 |
T |
|
| Q |
258 |
gttagaattaggttaaacaattgcttg |
284 |
Q |
| |
|
|||| ||||||| | |||||| ||||| |
|
|
| T |
9451294 |
gttaaaattagggtgaacaatagcttg |
9451268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 22964121 - 22964048
Alignment:
| Q |
199 |
ttgctgggtaggaaaa-cactaacaaaaatgaaatgcttaggtgatg--gggaaaagattatgttagaattagg |
269 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||||| | ||||| ||||||| |||| |||||||||||| |
|
|
| T |
22964121 |
ttgctgagtaggaaaagcactaacaaaaattaaatgcttggttgatggagggaaaatattaggttagaattagg |
22964048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9795 times since January 2019
Visitors: 7932