View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723_high_23 (Length: 284)
Name: NF1723_high_23
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1723_high_23 |
| |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 269
Target Start/End: Original strand, 2761979 - 2762173
Alignment:
Q |
74 |
ctcttcttattatttcagttccataacattctcacatttattttcatcaacttaattctttctaactgtagtagaaaacattaagctatagtccgtttgc |
173 |
Q |
|
|
||||| ||||||| |||||||||| || ||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
T |
2761979 |
ctcttattattataccagttccatataat-ctcacatatatgttcatcaacttaattctttctgactctagtagaaaacattaagctatagtccgtttgc |
2762077 |
T |
|
Q |
174 |
tacaagaacttattagttatacatacccttaaaaattagatttttcattaatctatttaaccgtaaaaagaaaatgaaataaaacttcaagtattt |
269 |
Q |
|
|
||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
T |
2762078 |
tacaagaacttattagttatacatatactacaaaattagatttttcattcatctatttaaccgtaaagggaaaatgaaataaaacttcaagcattt |
2762173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 48653710 - 48653823
Alignment:
Q |
11 |
cacagaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcaca |
109 |
Q |
|
|
|||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
T |
48653710 |
cacagaaagtaataacacaacatcttatacatgataaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcaca |
48653809 |
T |
|
Q |
110 |
tttattttcatcaa |
123 |
Q |
|
|
||||| |||||||| |
|
|
T |
48653810 |
tttatgttcatcaa |
48653823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 48577003 - 48576936
Alignment:
Q |
53 |
tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacatttattttcatcaa |
123 |
Q |
|
|
|||||||||||| ||||||||||||| ||||||| ||||| ||||| |||||||||||| |||||||| |
|
|
T |
48577003 |
tctttcataaaaggctcatttctctt---attattttagttcgataacgatctcacatttatgttcatcaa |
48576936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 42861704 - 42861595
Alignment:
Q |
15 |
gaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacattta |
113 |
Q |
|
|
|||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
T |
42861704 |
gaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcacattta |
42861605 |
T |
|
Q |
114 |
ttttcatcaa |
123 |
Q |
|
|
| |||||||| |
|
|
T |
42861604 |
tgttcatcaa |
42861595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 18472802 - 18472914
Alignment:
Q |
12 |
acagaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacat |
110 |
Q |
|
|
||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||| |
|
|
T |
18472802 |
acagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacat |
18472901 |
T |
|
Q |
111 |
ttattttcatcaa |
123 |
Q |
|
|
|||| |||||||| |
|
|
T |
18472902 |
ttatgttcatcaa |
18472914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 13773339 - 13773409
Alignment:
Q |
53 |
tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacatttattttcatcaa |
123 |
Q |
|
|
|||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||| |
|
|
T |
13773339 |
tctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacatttatattcatcaa |
13773409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 28267069 - 28267139
Alignment:
Q |
53 |
tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacatttattttcatcaa |
123 |
Q |
|
|
||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||||| |
|
|
T |
28267069 |
tctttcataaagggctcatttcccttcttattattttagttcgataacgatctcacatttatgttcatcaa |
28267139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 35670665 - 35670774
Alignment:
Q |
11 |
cacagaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcaca |
109 |
Q |
|
|
|||||||||||| ||||| | |||||||||||||| |||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||| |
|
|
T |
35670665 |
cacagaaagtaataacacgacatcttatacatgacaaaagaaatctttcataaaaggctcatttatctgcttattatttcag----ataacgatctcaca |
35670760 |
T |
|
Q |
110 |
tttattttcatcaa |
123 |
Q |
|
|
||||| |||||||| |
|
|
T |
35670761 |
tttatgttcatcaa |
35670774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 41340181 - 41340240
Alignment:
Q |
53 |
tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacattt |
112 |
Q |
|
|
|||||||||||| ||| ||||||||| |||||||||| |||| |||||| ||||| |||| |
|
|
T |
41340181 |
tctttcataaaaagcttatttctcttattattatttctgttcgataacaatctcaaattt |
41340240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 12774371 - 12774424
Alignment:
Q |
70 |
atttctcttcttattatttcagttccataacattctcacatttattttcatcaa |
123 |
Q |
|
|
||||||||| ||||||||| ||||| ||||| |||||||||||| |||||||| |
|
|
T |
12774371 |
atttctcttattattattttagttcgataacgatctcacatttatgttcatcaa |
12774424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11015 times since January 2019
Visitors: 8059