View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_high_29 (Length: 249)

Name: NF1723_high_29
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_high_29
NF1723_high_29
[»] chr3 (6 HSPs)
chr3 (15-241)||(53425231-53425457)
chr3 (24-234)||(53309228-53309438)
chr3 (43-173)||(53432440-53432570)
chr3 (87-241)||(48372155-48372312)
chr3 (43-239)||(26097750-26097946)
chr3 (89-176)||(53321068-53321155)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 53425457 - 53425231
Alignment:
Q  15 gaaacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425457 gaaacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcg 53425358  T
Q  115 cggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425357 cggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcga 53425258  T
Q  215 cgatgccatttatgatggagatgatgt 241  Q
    |||||||||||||||||||| ||||||    
T  53425257 cgatgccatttatgatggagttgatgt 53425231  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 53309438 - 53309228
Alignment:
Q  24 aacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcaggga 123  Q
    |||||||||||||||| | |||||||||| ||||| ||||| || || || ||||||||  | ||||||||||||||||| |||| ||| || | |||||    
T  53309438 aacacggtaagggatacatatggacatggtacccatacagcatcgacagcagcagggaatgtcgtgagtggtgcatcatactatggtcttgcagaaggga 53309339  T
Q  124 cagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccat 223  Q
    ||||||||||||||||  |||| |||||||| || |||||||||||||| | ||||  ||||| ||||||||| || ||||| || |||||| |||||||    
T  53309338 cagcaaaaggtgggtcctctgagtcgaggttagcgatttacaaagtgtgatttccttcctgttatggctctgggatccttgcagcgttcgacaatgccat 53309239  T
Q  224 ttatgatggag 234  Q
    ||  |||||||    
T  53309238 tttcgatggag 53309228  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 53432570 - 53432440
Alignment:
Q  43 atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc 142  Q
    |||| ||||| ||||||||||| || || || || |||||  ||||||||||||||||||| | || ||| |||||||||||  ||||||| ||||| ||    
T  53432570 atggtcatggaacccacacagcatcgaccgcggctgggaatgttgtgagtggtgcatcatactttggtcttgcggcagggacgacaaaaggcgggtcccc 53432471  T
Q  143 tgaatcgaggttggcaatttacaaagtgtgc 173  Q
    |||||||||||||||||||||||||||||||    
T  53432470 tgaatcgaggttggcaatttacaaagtgtgc 53432440  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 48372155 - 48372312
Alignment:
Q  87 gtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgt---gctctcctggct 183  Q
    ||||||||||||||||| |||| |||||||| ||||| |||||||||||| || ||||||||||||||||| |||||||||||||   ||  |  ||| |    
T  48372155 gtgagtggtgcatcatactatggtctcgcggaagggatagcaaaaggtggttcccctgaatcgaggttggcgatttacaaagtgtgcagcaatattggtt 48372254  T
Q  184 gttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagatgatgt 241  Q
    | |||||||||| ||| ||||| || || |||||||| |||| |||||||| ||||||    
T  48372255 gctctggctctgccatacttgcggcgtttgacgatgcaatttctgatggagttgatgt 48372312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 26097946 - 26097750
Alignment:
Q  43 atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc 142  Q
    |||| ||||| ||||||||||| ||||| || || |||||| | ||||||||||||||||| | || ||| || ||||| || ||||||||||| || ||    
T  26097946 atgggcatggaacccacacagcgtcaaccgcggcggggaacgtcgtgagtggtgcatcatactttggtcttgcagcaggaacggcaaaaggtggatcccc 26097847  T
Q  143 tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagatgat 239  Q
     | ||| |||||| |||||||||||||||||     ||| || |||||||||| ||| ||||| || ||||||||||| |||| ||| |||| ||||    
T  26097846 cggatcaaggttgtcaatttacaaagtgtgcaactttggttgctctggctctgccatccttgcggctttcgacgatgcaatttctgacggagttgat 26097750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 53321155 - 53321068
Alignment:
Q  89 gagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctct 176  Q
    ||||||||||||||| || | ||| ||   ||||||| ||||||| ||||||||| |||| |||||||| ||||||||||||||||||    
T  53321155 gagtggtgcatcatactacggtcttgcaaaagggacatcaaaaggggggtctcctcaatcaaggttggcgatttacaaagtgtgctct 53321068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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