View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_high_38 (Length: 221)

Name: NF1723_high_38
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_high_38
NF1723_high_38
[»] chr5 (6 HSPs)
chr5 (108-211)||(27239502-27239605)
chr5 (1-69)||(27239698-27239772)
chr5 (98-172)||(27718968-27719042)
chr5 (104-137)||(27253406-27253439)
chr5 (84-141)||(16207564-16207623)
chr5 (126-162)||(41755329-41755365)
[»] chr4 (4 HSPs)
chr4 (121-172)||(10164459-10164510)
chr4 (116-165)||(45615422-45615471)
chr4 (96-139)||(36768836-36768879)
chr4 (179-211)||(12441838-12441870)
[»] chr8 (3 HSPs)
chr8 (116-167)||(32691744-32691795)
chr8 (113-172)||(15140370-15140429)
chr8 (113-160)||(31681834-31681881)
[»] chr7 (9 HSPs)
chr7 (84-169)||(10893321-10893407)
chr7 (112-161)||(43160491-43160540)
chr7 (84-159)||(10893840-10893919)
chr7 (113-162)||(23720467-23720515)
chr7 (109-201)||(37610049-37610139)
chr7 (116-161)||(650526-650571)
chr7 (117-162)||(21238823-21238868)
chr7 (104-148)||(1745185-1745229)
chr7 (119-163)||(18750881-18750925)
[»] chr6 (5 HSPs)
chr6 (103-160)||(34057962-34058019)
chr6 (115-162)||(29449687-29449734)
chr6 (104-150)||(10158002-10158048)
chr6 (116-150)||(18803265-18803299)
chr6 (113-161)||(10335380-10335428)
[»] chr1 (4 HSPs)
chr1 (103-171)||(18556020-18556088)
chr1 (94-141)||(50195450-50195497)
chr1 (113-172)||(31667421-31667480)
chr1 (105-137)||(51595800-51595832)
[»] chr3 (3 HSPs)
chr3 (107-167)||(28576717-28576777)
chr3 (116-167)||(1502575-1502626)
chr3 (113-171)||(45382740-45382798)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 27239605 - 27239502
Alignment:
Q  108 ctgataccgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgacacgtgttagtgttgtgtctttgtctgtgtcagtgct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  27239605 ctgataccgacacatgtgattacattcaattatgcaattttcttacgttactataggtgttgacacatgttagtgttgtgtctttgtctgtgtcagtgct 27239506  T
Q  208 tcat 211  Q
    ||||    
T  27239505 tcat 27239502  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 27239772 - 27239698
Alignment:
Q  1 tgttgcttttgtttttatgaagattttgtgatt-----ttgtgtgtaca-ataccctaatcatcggtgtatgtag 69  Q
    |||||||||||||||||||||||||||||||||     || |||||| | ||||||||||||| |||||||||||    
T  27239772 tgttgcttttgtttttatgaagattttgtgatttgtgattttgtgtatacataccctaatcattggtgtatgtag 27239698  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 27718968 - 27719042
Alignment:
Q  98 gtgtctgtgtctgataccgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgaca 172  Q
    ||||| ||||| || |||||||||||||||||  ||||||| |||  |||||||| |||||||| ||||| ||||    
T  27718968 gtgtcagtgtccgacaccgacacatgtgattatgttcaattttgccgttttcttaaattactactggtgtcgaca 27719042  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 27253439 - 27253406
Alignment:
Q  104 gtgtctgataccgacacatgtgattacattcaat 137  Q
    |||||||| |||||||||||||||||||||||||    
T  27253439 gtgtctgacaccgacacatgtgattacattcaat 27253406  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 16207564 - 16207623
Alignment:
Q  84 ttctaattgaaggtgtgtct--gtgtctgataccgacacatgtgattacattcaattatg 141  Q
    |||||||||| |||||||||  |||||||| ||| |||| |||||||||||| |||||||    
T  16207564 ttctaattgacggtgtgtcttagtgtctgacaccaacacttgtgattacattgaattatg 16207623  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 41755365 - 41755329
Alignment:
Q  126 attacattcaattatgcaattttcttacattactacc 162  Q
    ||||||||||||||||  |||||||||||||||||||    
T  41755365 attacattcaattatgtcattttcttacattactacc 41755329  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 10164510 - 10164459
Alignment:
Q  121 atgtgattacattcaattatgcaattttcttacattactaccggtgttgaca 172  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgaca 10164459  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 45615422 - 45615471
Alignment:
Q  116 gacacatgtgattacattcaattatgcaattttcttacattactaccggt 165  Q
    ||||||||||||||| ||||||||||  ||||||||| ||||||||||||    
T  45615422 gacacatgtgattacgttcaattatgtcattttcttaaattactaccggt 45615471  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 36768836 - 36768879
Alignment:
Q  96 gtgtgtctgtgtctgataccgacacatgtgattacattcaatta 139  Q
    ||||||||||||| || || ||||||||||||||||||||||||    
T  36768836 gtgtgtctgtgtcggacactgacacatgtgattacattcaatta 36768879  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 12441838 - 12441870
Alignment:
Q  179 agtgttgtgtctttgtctgtgtcagtgcttcat 211  Q
    |||||||||||| ||||||||||||||||||||    
T  12441838 agtgttgtgtctgtgtctgtgtcagtgcttcat 12441870  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 32691795 - 32691744
Alignment:
Q  116 gacacatgtgattacattcaattatgcaattttcttacattactaccggtgt 167  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  32691795 gacacatgtgattacattcaattatgtcattttcttaaattactaccggtgt 32691744  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 15140370 - 15140429
Alignment:
Q  113 accgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgaca 172  Q
    |||||||| |||| |||||||||||||| ||| ||||| | |||||||||||||||||||    
T  15140370 accgacacgtgtggttacattcaattattcaaatttctcaaattactaccggtgttgaca 15140429  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 31681834 - 31681881
Alignment:
Q  113 accgacacatgtgattacattcaattatgcaattttcttacattacta 160  Q
    |||||||||||||||| ||||||||||||  ||||||||| |||||||    
T  31681834 accgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 10893321 - 10893407
Alignment:
Q  84 ttctaattgaaggtgtgtctg-tgtctgataccgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttg 169  Q
    |||| |||||||| ||||||| |||| |||||| ||||||| |||||||||||||||||  ||||||| | |||||| |||||||||    
T  10893321 ttctgattgaaggcgtgtctggtgtccgataccaacacatgcgattacattcaattatgtcattttctcaaattactgccggtgttg 10893407  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 43160540 - 43160491
Alignment:
Q  112 taccgacacatgtgattacattcaattatgcaattttcttacattactac 161  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  43160540 taccgacacatgtgattacattcaattatgttattttcttaaattactac 43160491  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 10893840 - 10893919
Alignment:
Q  84 ttctaattgaaggtgtgtctg----tgtctgataccgacacatgtgattacattcaattatgcaattttcttacattact 159  Q
    ||||||||||||| |||||||    |||| || ||| |||||||||||||||||||||||||  ||||||||| ||||||    
T  10893840 ttctaattgaaggcgtgtctggtggtgtcagacaccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 23720515 - 23720467
Alignment:
Q  113 accgacacatgtgattacattcaattatgcaattttcttacattactacc 162  Q
    ||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  23720515 accgacacatgtgattacattcaattatg-atttttcttaaattactacc 23720467  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 37610049 - 37610139
Alignment:
Q  109 tgataccgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgacacgtgttagtgttgtgtctttgtctgtgtc 201  Q
    |||||| |||||||||||||||||||| |||||  |||||| ||  |||||||||||||  |||  |||||||||||||| | ||| ||||||    
T  37610049 tgatactgacacatgtgattacattcagttatgtcattttcatatgttactaccggtgtcaaca--tgttagtgttgtgtttgtgtttgtgtc 37610139  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 650571 - 650526
Alignment:
Q  116 gacacatgtgattacattcaattatgcaattttcttacattactac 161  Q
    ||||||||||||| ||||||||||||  ||||||||| ||||||||    
T  650571 gacacatgtgattgcattcaattatgtcattttcttaaattactac 650526  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 21238868 - 21238823
Alignment:
Q  117 acacatgtgattacattcaattatgcaattttcttacattactacc 162  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||    
T  21238868 acacatgtgattacattcaattttgacattttcttaaattactacc 21238823  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 1745229 - 1745185
Alignment:
Q  104 gtgtctgataccgacacatgtgattacattcaattatgcaatttt 148  Q
    |||||||| ||| |||||||||||| ||||||||||||| |||||    
T  1745229 gtgtctgacaccaacacatgtgattccattcaattatgccatttt 1745185  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 18750925 - 18750881
Alignment:
Q  119 acatgtgattacattcaattatgcaattttcttacattactaccg 163  Q
    |||||||||||||||||||||||  ||||||||| |||| |||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaattattaccg 18750881  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  103 tgtgtctgataccgacacatgtgattacattcaattatgcaattttcttacattacta 160  Q
    ||||||||| ||||||||||||||||||| |||||||||  ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 29449734 - 29449687
Alignment:
Q  115 cgacacatgtgattacattcaattatgcaattttcttacattactacc 162  Q
    |||||||||||||||||||||||||||  ||||||| | |||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattactacc 29449687  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 10158048 - 10158002
Alignment:
Q  104 gtgtctgataccgacacatgtgattacattcaattatgcaattttct 150  Q
    ||||||| |||||||||||||||||||||| |||||||  |||||||    
T  10158048 gtgtctggtaccgacacatgtgattacattgaattatgtcattttct 10158002  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 18803299 - 18803265
Alignment:
Q  116 gacacatgtgattacattcaattatgcaattttct 150  Q
    |||||||||||||||||||||||||| ||||||||    
T  18803299 gacacatgtgattacattcaattatgtaattttct 18803265  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 10335380 - 10335428
Alignment:
Q  113 accgacacatgtgattacattcaattatgcaattttcttacattactac 161  Q
    |||||||||| ||||||||||||||||||  ||||||| | ||||||||    
T  10335380 accgacacatctgattacattcaattatgtcattttctcaaattactac 10335428  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 18556020 - 18556088
Alignment:
Q  103 tgtgtctgataccgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgac 171  Q
    ||||||||| || |||||||||||||||| |||||||||  ||||| ||| |||| |||||||||||||    
T  18556020 tgtgtctgacactgacacatgtgattacagtcaattatgtcattttattaaattattaccggtgttgac 18556088  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 50195450 - 50195497
Alignment:
Q  94 aggtgtgtctgtgtctgataccgacacatgtgattacattcaattatg 141  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||||    
T  50195450 aggtgtgtccgtgtccgacaccgacacatgtgattacattcaattatg 50195497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 31667480 - 31667421
Alignment:
Q  113 accgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgaca 172  Q
    ||||||||||||||||||||| |||||||  ||||||| | |||| |||| |||||||||    
T  31667480 accgacacatgtgattacatttaattatgtcattttctaaaattattaccagtgttgaca 31667421  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 51595832 - 51595800
Alignment:
Q  105 tgtctgataccgacacatgtgattacattcaat 137  Q
    ||||||| |||||||||||||||||||||||||    
T  51595832 tgtctgacaccgacacatgtgattacattcaat 51595800  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 28576777 - 28576717
Alignment:
Q  107 tctgataccgacacatgtgattacattcaattatgcaattttcttacattactaccggtgt 167  Q
    |||||||||||||||||| ||||||||||||| ||  ||||||| | |||| |||||||||    
T  28576777 tctgataccgacacatgtaattacattcaattttgtcattttctcaaattattaccggtgt 28576717  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 1502626 - 1502575
Alignment:
Q  116 gacacatgtgattacattcaattatgcaattttcttacattactaccggtgt 167  Q
    ||||||||||||||||||||||||||  ||||||||| |||| |||| ||||    
T  1502626 gacacatgtgattacattcaattatgtcattttcttagattattaccagtgt 1502575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 45382798 - 45382740
Alignment:
Q  113 accgacacatgtgattacattcaattatgcaattttcttacattactaccggtgttgac 171  Q
    ||||||| |||||||||||||||| ||||  ||||||||| |||||||| | |||||||    
T  45382798 accgacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgac 45382740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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