View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_high_6 (Length: 420)
Name: NF1723_high_6
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_high_6 |
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| [»] scaffold0602 (1 HSPs) |
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Alignment Details
Target: scaffold0602 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 163 - 411
Target Start/End: Complemental strand, 4721 - 4490
Alignment:
| Q |
163 |
tctcagtgagaaactaaatctccgggattagggatttagagttcctttgttcttgccaagtttgagtgaatgattttgtggctctttatttagtgaaacc |
262 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4721 |
tctcagtgagaaactgaatctccgggattagggatttagagttcctctgttcttgccaagtttgagtgaatgattttgtggctctttatttagtgaaaca |
4622 |
T |
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| Q |
263 |
gttcgcggaaaattgttgttcacggcaccaaactgtactgtgaaacagtttggttagtgaa-ttttattctaaaaatctggtttggttcaagtcttgata |
361 |
Q |
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| T |
4621 |
gttcgcgga-----------------accgaactgtactgtg-aacagtttggttagtgaatttttattctaaaaatctggtttggttcaagtcttgata |
4540 |
T |
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| Q |
362 |
cagtaaaattcaattttttaaacaccaattcggttctgatatagtataat |
411 |
Q |
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||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
4539 |
cagtataatttaattttttaaacaccaattcggttctgatacagtataat |
4490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 163 - 359
Target Start/End: Original strand, 8619722 - 8619901
Alignment:
| Q |
163 |
tctcagtgagaaactaaatctccgggattagggatttagagttcctttgttcttgccaagtttgagtgaatgattttgtggctctttatttagtgaaacc |
262 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8619722 |
tctcagtgagaaactgaatctccgggattagggatttagagttcctctgttcttgccaagtttgagtgaatgattttgtggctctttatttagtgaaaca |
8619821 |
T |
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| Q |
263 |
gttcgcggaaaattgttgttcacggcaccaaactgtactgtgaaacagtttggttagtgaattttattctaaaaatctggtttggttcaagtcttga |
359 |
Q |
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| T |
8619822 |
gttcgcgga-----------------accgaactgtactgtgtaacagtttggttagtgaatttttttctaaaaatctggtttggttcaagtcttga |
8619901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 163 - 359
Target Start/End: Complemental strand, 8639328 - 8639149
Alignment:
| Q |
163 |
tctcagtgagaaactaaatctccgggattagggatttagagttcctttgttcttgccaagtttgagtgaatgattttgtggctctttatttagtgaaacc |
262 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8639328 |
tctcagtgagaaactgaatctccgggattagggatttagagttcctctgttcttgccaagtttgagtgaatgattttgtggctctttatttagtgaaaca |
8639229 |
T |
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| Q |
263 |
gttcgcggaaaattgttgttcacggcaccaaactgtactgtgaaacagtttggttagtgaattttattctaaaaatctggtttggttcaagtcttga |
359 |
Q |
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| T |
8639228 |
gttcgcgga-----------------accgaactgtactgtgtaacagtttggttagtgaatttttttctaaaaatctggtttggttcaagtcttga |
8639149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 8619561 - 8619685
Alignment:
| Q |
33 |
gaaggttcaccgtcctagactctgaggagtgagtccggttatataatataataaggtaaaagagttagtattcatactttgacaaaggttc----atggg |
128 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||| |
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| T |
8619561 |
gaaggttcaccgacctagactctgaggagtgagtccaattatataatataataaggtaaaagagtaagtattcatacattcacaaaggttcaaatatggg |
8619660 |
T |
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| Q |
129 |
tcattgtaaaaattcataaatgttt |
153 |
Q |
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||||||||||||||||| ||||||| |
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| T |
8619661 |
tcattgtaaaaattcatcaatgttt |
8619685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 8639489 - 8639365
Alignment:
| Q |
33 |
gaaggttcaccgtcctagactctgaggagtgagtccggttatataatataataaggtaaaagagttagtattcatactttgacaaaggttc----atggg |
128 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||| |
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| T |
8639489 |
gaaggttcaccgacctagactctgaggagtgagtccaattatataatataataaggtaaaagagtaagtattcatacattcacaaaggttcaaatatggg |
8639390 |
T |
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| Q |
129 |
tcattgtaaaaattcataaatgttt |
153 |
Q |
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||||||||||||||||| ||||||| |
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| T |
8639389 |
tcattgtaaaaattcatcaatgttt |
8639365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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