View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723_high_7 (Length: 414)
Name: NF1723_high_7
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 34905702 - 34906085
Alignment:
| Q |
16 |
ctattattatcctgaacttagctgatgcaatgttagttaaggttgctaagtaatgcaaacatcaaaagtaaattttgtgcatctgcaaaacagtcaaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34905702 |
ctattattatcctgaacttagctgatgcaatgttagttaaggttgctaagtaatgcaaacatcaaaagtaaattttgtgcatctgcaaaacagtcaaatt |
34905801 |
T |
|
| Q |
116 |
tgaagccataaaacttaccagaagaaatctgctcttgagttgagatcagtacttaacaccataagaggcttccctgtctgcaaatatcaacatagaaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34905802 |
tgaagccataaaacttaccagaagaaatctgctcttgagttgagatcagtacttaacaccataagaggcttccctgtctgcaaatatcaacatagaaacc |
34905901 |
T |
|
| Q |
216 |
agttatgctattcaataaacataagctttcttatgttttataaccaagatttcaaaaagatagtccacgacggcaatgttaggtttttgatgcctcagcg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34905902 |
agttatgctattcaataaacataagctttcttatgttttataaccaagatttcaaaaagatagtccacgacggcaatgttaggtttttgatgcctcagcg |
34906001 |
T |
|
| Q |
316 |
accgtaattgtggccgcatcagctgttcttgaccataaatttatgcatcttcaaggatcacaatgtgattgcaaatactctctg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906002 |
accgtaattgtggccgcatcagctgttcttgaccataaatttatgcatcttcaaggatcacaatgtgattgcaaatactctctg |
34906085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7784 times since January 2019
Visitors: 7737