View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_high_9 (Length: 393)
Name: NF1723_high_9
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 50095641 - 50095268
Alignment:
| Q |
1 |
atgaacaaaaagaaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50095641 |
atgaacaaaaagaaaccagaatgtagcttgagtaaatatttaattggtgcaaaattgtgggtggcctatttcaacaattcacaaactcaaaagacgttgt |
50095542 |
T |
|
| Q |
101 |
tatgtaaccagtatgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagaccacagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50095541 |
tatgtaaccagtatgttagcaggtcgggttacagatacaggtctaagtaatgttaagaacataaacctcatccttctatcacattccacagatcacagtt |
50095442 |
T |
|
| Q |
201 |
actctgaacaaattccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50095441 |
actctgaacaaattccagtgaatttcacaagtcattaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagat |
50095342 |
T |
|
| Q |
301 |
atatcaaagaatgacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50095341 |
atatcaaagaatgacttataagttataagcaaacataaaacaatatacgaacataagctaactggattaatctc |
50095268 |
T |
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