View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723_low_1 (Length: 806)
Name: NF1723_low_1
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 693; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 18 - 794
Target Start/End: Original strand, 34976343 - 34977119
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976343 |
tgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
34976442 |
T |
|
| Q |
118 |
attagacgcctatcaataacaactagttccggtgatttcagagcatgtatttaaaactcacatattcggtcactatttcttttcatagataaatcaaatt |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
34976443 |
attagacgcctatcaatagcaactagttccggtgatttcagagcatgtattgaaaactcacatattctgtctctatttcttttcacagataaatcaaatt |
34976542 |
T |
|
| Q |
218 |
atgaagaggaatccatcgtgaatagaatcttgaaaaaacataggacactgaaggtgcttgattttaaaggtgcattgtttattgattttaaaccttttag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976543 |
atgaagaggaatccatcgtgaatagaatcttgaaaaagcataggacactgaaggtgcttgattttaaaggtgcattgtttattgattttaaaccttttag |
34976642 |
T |
|
| Q |
318 |
aagtctgatccacttgaaatatctaagcttcaaaaatttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctggag |
417 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976643 |
aagtctgatccacttgaaatatttaagcttcaaaaatttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctggag |
34976742 |
T |
|
| Q |
418 |
actttggatctaagggcttcttatccactcaccgttataccaaaggagattagcaagcttagaaagctacgccatcttatgggcaacaagagatgtatgc |
517 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34976743 |
actttggatctaagggcttcttttcctcttaccgttataccaaaggagattagcaagcttagaaagctacgccatcttatgggcaacaagaggtgtatgc |
34976842 |
T |
|
| Q |
518 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
617 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34976843 |
ttcaattgaaggatgtgttaggatgcatggaatctttacaaacattgaccggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
34976942 |
T |
|
| Q |
618 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34976943 |
gttcagacagttaaggaagttgagcttgttttatgtaagggcagaacattcaagcgctctatattcctcactgaatgagatgaaacacttggagaattta |
34977042 |
T |
|
| Q |
718 |
tacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34977043 |
tacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
34977119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 794
Target Start/End: Complemental strand, 2304980 - 2304206
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2304980 |
tgttcatgatctgatacgtataatgttcctagaaaagtgtgaggatttaagttttttcaagcatttcaatgaagtcaatcattcatctttaagtggaact |
2304881 |
T |
|
| Q |
118 |
attagacgcctatcaataacaactagttccggtgatttcagagcatgtatttaaaactcacatattcggtcactatttcttttcatagataaatcaaatt |
217 |
Q |
| |
|
||||||||| |||||||| |||| |||| || |||| || ||||||||| |||||||||||||||||||| ||||| |||||| | |||||||||| | |
|
|
| T |
2304880 |
attagacgcttatcaatagcaacctattccagttatttaagggcatgtattgaaaactcacatattcggtcagtattttttttcacaaataaatcaaagt |
2304781 |
T |
|
| Q |
218 |
atgaagaggaatccatcgtgaatagaatcttgaaaaaacataggacactgaaggtgcttgattttaaaggtgc---attgtttattgattttaaaccttt |
314 |
Q |
| |
|
||| |||| ||| ||| ||| ||||||||||||||| || |||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||| |
|
|
| T |
2304780 |
atgtagagatatctatcatgagtagaatcttgaaaaagcacaggacactgaaggtgcttgattttcaagatgccaaattgtttattgattttgaaccttt |
2304681 |
T |
|
| Q |
315 |
tagaagtctgatccacttgaaatatctaagcttcaaaaatttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctg |
414 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| || ||| ||||| ||| | ||||| ||| ||||||||||||||||| |||| | ||||||| |
|
|
| T |
2304680 |
tagaagtctgttccacttgaaatatttaagct--aagaatatatcc---ggactataccaaaatgtacttcccaaatggattggtcttcttctaaatctg |
2304586 |
T |
|
| Q |
415 |
gagactttggatctaagggcttcttatccactcaccgttataccaaaggagattagcaagcttagaaagctacgccatcttatgggcaacaagagatgta |
514 |
Q |
| |
|
||||| |||||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||| |
|
|
| T |
2304585 |
gagaccttggatctaaggagttcttcttgttttaccattataccaaaggagattagcaagcttagaaagctatgccatcttatgggctacaatatctgtt |
2304486 |
T |
|
| Q |
515 |
tgcttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttggg |
614 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2304485 |
tgtttcaattgaaggatgttataggaggcatggaatctctacaaacattgactggaatgaaaattggtaagggtggaatagagttaattaaagagttggg |
2304386 |
T |
|
| Q |
615 |
aaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaat |
714 |
Q |
| |
|
|||| | || |||||||||||||| ||||||||| ||||| | ||||||||||| |||| |||||||||| |||||||||||||||||| |||||| |
|
|
| T |
2304385 |
aaagctaaggcagttaaggaagtttagcttgtttgatgtgaggctagaacattcaatcgctttatcttcctcgttgaatgagatgcgacactcggagaaa |
2304286 |
T |
|
| Q |
715 |
ttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
794 |
Q |
| |
|
|||| |||| ||||| ||| ||||| || | ||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
2304285 |
ttatgcattatgtcaagaagcggagatgatggggtttttgatgtcattgatttacatttggtttcgcttccacctatgct |
2304206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 34983454 - 34983871
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34983454 |
tgttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
34983553 |
T |
|
| Q |
118 |
attagacgcctatcaataacaactagttccggtgatttcagagcatgtatttaaaactcacatattcggtcactatttcttttcatagataaatcaaatt |
217 |
Q |
| |
|
|||||||||||||||||| |||| ||| || || | ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34983554 |
attagacgcctatcaatagcaaccagt------gacttaaatgcatgtaatgaaaactcacatattcggtcactatttcttttcacagataaatcaaata |
34983647 |
T |
|
| Q |
218 |
atgaagaggaatccatcgtgaatagaatcttgaaaaaacataggacactgaaggtgcttgattttaaaggtgc---attgtttattgattttaaaccttt |
314 |
Q |
| |
|
||| | ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||| ||| ||| |||| ||| |||||| ||| |
|
|
| T |
34983648 |
atgcaaaggaatccagcgtgaatagaatcttgaaaaagtacaggacactgaaggtgcttgattttcaagatgccagattttttagggatcttaaacattt |
34983747 |
T |
|
| Q |
315 |
tagaagtctgatccacttgaaatatctaagcttcaaaaatttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctg |
414 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||| ||||| || | ||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
34983748 |
tagaagtctgatccacttgaaatatttaagcttcaagaatttatacatacaacatagccaacatggatttcccaaatggattggtattctcctaaatctg |
34983847 |
T |
|
| Q |
415 |
gagactttggatctaagggcttct |
438 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
34983848 |
gagaccttggatctaagggcttct |
34983871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 34990189 - 34990521
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
34990189 |
tgttcatgatctgatacatatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgatgacgatcattcatctttaagtggaact |
34990288 |
T |
|
| Q |
118 |
attagacgcctatcaataacaactagttccggtgatttcagagcatgtatttaaaactcacatattcggtcactatttcttttcatagataaatcaaatt |
217 |
Q |
| |
|
|| ||||||||||||||| |||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34990289 |
atcagacgcctatcaatagcaacaaactccggtgatttcagagcatgtattgaaaactcacatattcggtcactatttcttttcacagataaatcaaatt |
34990388 |
T |
|
| Q |
218 |
atgaagaggaatccatcgtgaatagaatcttgaaaaaacataggacactgaaggtgcttgattttaaaggt---gcattgtttattgattttaaaccttt |
314 |
Q |
| |
|
|| ||||||||||||| |||| ||||| || ||||| || |||||||||||||||||| |||| ||| | | || ||| |||||| ||||||||| |
|
|
| T |
34990389 |
atttagaggaatccatcctgaaaagaatattcaaaaagcagaggacactgaaggtgcttcatttagaagatgtcggatgttttgttgattataaaccttt |
34990488 |
T |
|
| Q |
315 |
tagaagtctgatccacttgaaatatctaagctt |
347 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
34990489 |
tagatgtctgatccacttgaaatatctaagctt |
34990521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 382 - 729
Target Start/End: Original strand, 34990583 - 34990930
Alignment:
| Q |
382 |
tttcccaaatggattggtattctccaaaatctggagactttggatctaagggcttcttatccactcaccgttataccaaaggagattagcaagcttagaa |
481 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| ||||||||||| ||| ||| | | | | ||||||||||||||||||||||||||||| |
|
|
| T |
34990583 |
tttcccaaatggattggtattctcctaaatcttgagaccttggatctaagagctgcttttggttttatcattataccaaaggagattagcaagcttagac |
34990682 |
T |
|
| Q |
482 |
agctacgccatcttatgggcaacaagagatgtatgcttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattgg |
581 |
Q |
| |
|
|||||||||||||||| || || || | | || |||| |||||||||||| | ||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
34990683 |
agctacgccatcttataggttgcaggatgtctttgtttcatttgaaggatgttattggatgcatggaatctctacaaacgttgagtggagtgaaaattgg |
34990782 |
T |
|
| Q |
582 |
taaggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatct |
681 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| | || | ||||||||||||||||||| | ||||| |||| ||||||||||||| ||||| |
|
|
| T |
34990783 |
taagggtggaatagagttgattaaggagttgggaaagctaaggcggttaaggaagttgagcttgaatgatgtgagggcaagacattcaagcgctttatct |
34990882 |
T |
|
| Q |
682 |
tcctcactgaatgagatgcgacacttggagaatttatacattgtgtca |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
34990883 |
tcctcactgaatgagatgcgacacttggagaaattacgcattgtgtca |
34990930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 518 - 794
Target Start/End: Original strand, 34983890 - 34984166
Alignment:
| Q |
518 |
ttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttgggaaa |
617 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34983890 |
ttcaattgaaggatgttataggaggcatggaatctctacaaacattgagtggagtgaaaattggtaagggtggaatagagttaattaaagagttgggaaa |
34983989 |
T |
|
| Q |
618 |
gttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaattta |
717 |
Q |
| |
|
| | ||||||||||||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||| ||||||||||||||||||| || || ||| |
|
|
| T |
34983990 |
gctaagacagttaaggaagttgaccttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttagaaaaatta |
34984089 |
T |
|
| Q |
718 |
tacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
794 |
Q |
| |
|
| ||||||||||||| || ||| | ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34984090 |
tgcattgtgtcaggatgggaagatggttcttattatgatgtcattgatttacatttggtttcgcctccacctatgct |
34984166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 794
Target Start/End: Original strand, 40580906 - 40581676
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40580906 |
tgttcacgatttgatacgtatgatgatccatgaaaagtgtgaggaattaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
40581005 |
T |
|
| Q |
118 |
attagacgcctatcaataacaactagttccggtgatttcagagcatgtatttaaaactcacatattcggtcactatttcttttcatagataaatcaaatt |
217 |
Q |
| |
|
|||||||||||||| ||||||| | |||| ||||||||| |||| ||||| ||||||||||||||||||||||| ||||||| | ||||| |||| |
|
|
| T |
40581006 |
cttagacgcctatcagtaacaaccaattccagtgatttcatagcacgtattgaaaactcacatattcggtcactacaacttttcacaaataaa---aatt |
40581102 |
T |
|
| Q |
218 |
atgaagaggaatccatcgtgaatagaatcttgaaaaaacataggacactgaaggtgcttgattttaaaggtg---cattgtttattgattttaaaccttt |
314 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||| || ||||| ||||||||||||||| ||| |
|
|
| T |
40581103 |
t---agatgaatccatggtgaatagaatcttgaaaaagcacaggacactgaaggtgcttgattttcaagatgactcattgattattgattttaaacattt |
40581199 |
T |
|
| Q |
315 |
tagaagtctgatccacttgaaatatctaagcttcaaaaatttatccatacgacgaaaccaacatggttttcccaaatggattggtattctccaaaatctg |
414 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| | | |||| || || ||||| ||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
40581200 |
tagaagtctggtccacttgaaatatttaagcttcaagattagatccgaacaac---accaaaatgtacttcccaaatggattggtcttctcctaaatctg |
40581296 |
T |
|
| Q |
415 |
gagactttggatctaagggcttcttatccactcaccgttataccaaaggagattagcaagcttagaaagctacgccatcttatgggcaacaagagatgta |
514 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
40581297 |
gagaccttggatctaagggcttcttattattgtagcgttataccaaaggacattagcaaacttagaaagctacgccatcttatgggctacaagatgtgtt |
40581396 |
T |
|
| Q |
515 |
tgcttcaattgaaggatgttttaggatgcatggaatctctacaaacattgactggagtgaaaattggtaaggatggaatagagttaattaaagagttggg |
614 |
Q |
| |
|
|| | ||| |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
40581397 |
tgtctaaatggaaggatgttataggatgcatggaatctctacaaacattgagtgcagtgaaaattggtaagggtggaatagagttaattaaagagttgag |
40581496 |
T |
|
| Q |
615 |
aaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttcctcactgaatgagatgcgacacttggagaat |
714 |
Q |
| |
|
|||| | || |||||||||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||| |||||||||||||||||||| | || |
|
|
| T |
40581497 |
aaagctaaggcagttaaggaagttgaacttgttttatgcgagggcagaacattttagcgctttatcttcctcattgaatgagatgcgacacttgaaaaaa |
40581596 |
T |
|
| Q |
715 |
ttatacattgtgtcaggaatgggagacaatatagattttgatgtcattgatttagatttggtttcgcctccacctatgct |
794 |
Q |
| |
|
||| |||||| |||||| |||| | || | | || |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40581597 |
ttaagcattgtatcaggatggggacaagattttgtttatgatgtcattgatttacatttggtttcgcctccacctatgct |
40581676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 22 - 349
Target Start/End: Complemental strand, 22656556 - 22656226
Alignment:
| Q |
22 |
catgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaactatta |
121 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| | | || |||||| ||||||||| ||||||||| |||| |
|
|
| T |
22656556 |
catgatttaatacatatgatgatccttgaaaagtgtgaggatttaagtttctgcaagcatattagtgcagatggccattcatctataagtggaattattc |
22656457 |
T |
|
| Q |
122 |
gacgcctatcaataacaactagttccggtgatttcagagcatgtatttaaaactcacatattcggtcactatttcttttcatagataaatcaaattatga |
221 |
Q |
| |
|
|||||||||||||| || ||| |||| |||||| | |||||||| |||||||| || ||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
22656456 |
gacgcctatcaatatcagctaattccaatgatttagcaacatgtattgaaaactcatatgttcggtcactatttcttttcacaaataaatcaaatttttt |
22656357 |
T |
|
| Q |
222 |
agaggaatccatcgtgaatagaatcttgaaaaaacataggacactgaaggtgcttgattttaaaggtgc---attgtttattgattttaaaccttttaga |
318 |
Q |
| |
|
||| ||| ||| | | ||||||||||| |||||| ||| |||||||||||||||||||| ||| ||| ||| ||||||||| |||| ||| || |
|
|
| T |
22656356 |
agatgaaaacattataagtagaatcttgacaaaacacaggccactgaaggtgcttgattttcaagatgccatattacttattgattataaaaatttggga |
22656257 |
T |
|
| Q |
319 |
agtctgatccacttgaaatatctaagcttca |
349 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| |
|
|
| T |
22656256 |
agtctggtccacttaaaatatttaagcttca |
22656226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 22620389 - 22620268
Alignment:
| Q |
19 |
gttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaacta |
118 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||||||| |||||||||||||| || | | ||||||| |||||||||||||||||| | || |
|
|
| T |
22620389 |
gttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcattcatctttaagtgaagtta |
22620290 |
T |
|
| Q |
119 |
ttagacgcctatcaataacaac |
140 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
22620289 |
ctcgacgcctatcaatagcaac |
22620268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 22647678 - 22647494
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| |||||||| ||||||| ||||||||| | | |||||||| || |||||||||| || || |
|
|
| T |
22647678 |
tgttcatgatctgatacatatgatgatccttgaaaagagtgaggatataagtttctgcaagcatattagtgaagatgatctttcatctttatttgaaatc |
22647579 |
T |
|
| Q |
118 |
attagacgcctatcaataacaactagttccggtgatttcagagcatgtatttaaaactcacatattcggtcactatttcttttca |
202 |
Q |
| |
|
||| |||||| ||| ||||||| |||| ||||| ||||||| | |||| |||||| ||||||||||||||||||||| |
|
|
| T |
22647578 |
attcgacgccattcattaacaacctattccaaagattttccggcatgtagtgaaaattcacatgttcggtcactatttcttttca |
22647494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 713
Target Start/End: Complemental strand, 22619818 - 22619689
Alignment:
| Q |
584 |
aggatggaatagagttaattaaagagttgggaaagttcagacagttaaggaagttgagcttgttttatgtggcggcagaacattcaagcgctctatcttc |
683 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| || ||||||||||| ||| | ||| || ||| ||||||| ||||||| ||||||| |
|
|
| T |
22619818 |
aggatggaatagagttaattaaggagttgggaaagttgaggcagttaaggaaattgggtttggttggtgttagaagagaacatggaagcgctttatcttc |
22619719 |
T |
|
| Q |
684 |
ctcactgaatgagatgcgacacttggagaa |
713 |
Q |
| |
|
| | |||||||| |||||||||||||||| |
|
|
| T |
22619718 |
cgtattgaatgagctgcgacacttggagaa |
22619689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 30988777 - 30988677
Alignment:
| Q |
40 |
atgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaactattagacgcctatcaataacaa |
139 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||| | ||| ||||| ||| || |||| ||||||||||| || | |||||||||||||||| |
|
|
| T |
30988777 |
atgatccttgaaaaatttgaggatttaaatttttgcaagcttatcagtgaaggtggacaatcatacttaagtggaacatttcgccgcctatcaataacaa |
30988678 |
T |
|
| Q |
140 |
c |
140 |
Q |
| |
|
| |
|
|
| T |
30988677 |
c |
30988677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 30988378 - 30988333
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagctacgccatcttatgggca |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
| T |
30988378 |
ccaaaggagattagcaagcttagaaagctaagacatcttatcggca |
30988333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 500
Target Start/End: Original strand, 22054102 - 22054145
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagctacgccatcttatggg |
500 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
22054102 |
ccaaaggagattaggaagcttagaaagctaagacatcttatggg |
22054145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 492
Target Start/End: Complemental strand, 22467024 - 22466989
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagctacgccat |
492 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22467024 |
ccaaaggagatttgcaagcttagaaagctacgccat |
22466989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 22028972 - 22029094
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||||||| | ||||| | |||||||||||||| |||||||||| | ||||||||||||| | | ||| ||||| || |||| |||||||||| |
|
|
| T |
22028972 |
tgttcatgatctaatacgcaatatgatccttgaaaaaagtgaggattttaatttttgcaagcatgttagtgatgatgggcaaacatccttaagtggaata |
22029071 |
T |
|
| Q |
118 |
attagacgcctatcaataacaac |
140 |
Q |
| |
|
|| | ||||| ||||||||||| |
|
|
| T |
22029072 |
gttcggcgcctgtcaataacaac |
22029094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 22187960 - 22188082
Alignment:
| Q |
18 |
tgttcatgatttgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaact |
117 |
Q |
| |
|
|||||||||| | ||||| | |||||||||||||| |||||||||| | ||||||||||||| | | ||| ||||| || |||| |||||||||| |
|
|
| T |
22187960 |
tgttcatgatctaatacgcaatatgatccttgaaaaaagtgaggattttaatttttgcaagcatgttagtgatgatgggcaaacatccttaagtggaata |
22188059 |
T |
|
| Q |
118 |
attagacgcctatcaataacaac |
140 |
Q |
| |
|
|| | ||||| ||||||||||| |
|
|
| T |
22188060 |
gttcggcgcctgtcaataacaac |
22188082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 21931814 - 21931859
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagctacgccatcttatgggca |
502 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||| |||| |
|
|
| T |
21931814 |
ccaaaggagattaggaagcttagaaagctaagacatcttatcggca |
21931859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 22029399 - 22029444
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagctacgccatcttatgggca |
502 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||| |||| |
|
|
| T |
22029399 |
ccaaaggagattaggaagcttagaaagctaagacatcttatcggca |
22029444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 486
Target Start/End: Original strand, 22035913 - 22035942
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagcta |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22035913 |
ccaaaggagattagcaagcttagaaagcta |
22035942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 486
Target Start/End: Original strand, 22116481 - 22116510
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagcta |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22116481 |
ccaaaggagattagcaagcttagaaagcta |
22116510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 502
Target Start/End: Original strand, 22188387 - 22188432
Alignment:
| Q |
457 |
ccaaaggagattagcaagcttagaaagctacgccatcttatgggca |
502 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | |||||||| |||| |
|
|
| T |
22188387 |
ccaaaggagattaggaagcttagaaagctaagacatcttatcggca |
22188432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 872195 - 872079
Alignment:
| Q |
41 |
tgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaactattagacgcctatcaataacaac |
140 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||| | | |||||| || || ||||| ||||| ||| ||| | || |||||| ||||||| |
|
|
| T |
872195 |
tgatccttgaaaaatttgaggatttaaatttttgcaagcatattagtgaagagggacaatcatccttaaggtgaataattcggcggctatcagtaacaac |
872096 |
T |
|
| Q |
141 |
tagttccggtgatttca |
157 |
Q |
| |
|
|| ||| | |||||||| |
|
|
| T |
872095 |
tacttctgatgatttca |
872079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 1233472 - 1233356
Alignment:
| Q |
41 |
tgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaactattagacgcctatcaataacaac |
140 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||| | | |||||| || || ||||| ||||| ||| ||| | || |||||| ||||||| |
|
|
| T |
1233472 |
tgatccttgaaaaatttgaggatttaaatttttgcaagcatattagtgaagagggacaatcatccttaaggtgaataattcggcggctatcagtaacaac |
1233373 |
T |
|
| Q |
141 |
tagttccggtgatttca |
157 |
Q |
| |
|
|| ||| | |||||||| |
|
|
| T |
1233372 |
tacttctgatgatttca |
1233356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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