View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_low_10 (Length: 381)

Name: NF1723_low_10
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_low_10
NF1723_low_10
[»] chr3 (26 HSPs)
chr3 (6-168)||(25857671-25857836)
chr3 (255-368)||(25857446-25857559)
chr3 (17-168)||(41218684-41218834)
chr3 (46-164)||(3063824-3063942)
chr3 (17-135)||(4580476-4580593)
chr3 (17-168)||(19949883-19950033)
chr3 (46-164)||(43304047-43304163)
chr3 (49-164)||(53012910-53013025)
chr3 (46-164)||(3068962-3069080)
chr3 (46-164)||(43306759-43306877)
chr3 (17-132)||(20398458-20398573)
chr3 (28-168)||(39913298-39913438)
chr3 (255-368)||(39913484-39913596)
chr3 (46-136)||(5128820-5128911)
chr3 (21-168)||(33620071-33620215)
chr3 (17-115)||(40593502-40593598)
chr3 (258-341)||(4580312-4580395)
chr3 (22-100)||(25340146-25340224)
chr3 (285-351)||(33620291-33620356)
chr3 (285-353)||(20398687-20398755)
chr3 (286-349)||(40594023-40594086)
chr3 (255-304)||(41218589-41218638)
chr3 (28-132)||(1151120-1151221)
chr3 (258-353)||(19999345-19999439)
chr3 (55-154)||(19795148-19795244)
chr3 (19-67)||(1697061-1697109)
[»] chr7 (14 HSPs)
chr7 (17-168)||(31577241-31577391)
chr7 (17-156)||(4303341-4303481)
chr7 (21-168)||(5678275-5678420)
chr7 (21-168)||(5703327-5703472)
chr7 (22-168)||(4668229-4668374)
chr7 (46-160)||(859243-859357)
chr7 (46-160)||(1217247-1217361)
chr7 (17-100)||(22572447-22572530)
chr7 (17-100)||(32052989-32053071)
chr7 (255-353)||(5678460-5678557)
chr7 (255-353)||(5703512-5703609)
chr7 (46-164)||(13882773-13882890)
chr7 (47-140)||(13886276-13886370)
chr7 (22-100)||(32936824-32936902)
[»] chr5 (8 HSPs)
chr5 (17-168)||(19677189-19677339)
chr5 (255-347)||(19677386-19677477)
chr5 (46-164)||(40778873-40778992)
chr5 (21-79)||(35160790-35160848)
chr5 (17-86)||(15385013-15385082)
chr5 (22-78)||(7775386-7775442)
chr5 (17-80)||(14504086-14504149)
chr5 (22-78)||(36844394-36844450)
[»] chr4 (16 HSPs)
chr4 (34-168)||(2053083-2053216)
chr4 (17-154)||(13085150-13085286)
chr4 (37-168)||(4053028-4053157)
chr4 (20-131)||(22716574-22716686)
chr4 (20-131)||(22988531-22988643)
chr4 (17-132)||(9596857-9596972)
chr4 (47-164)||(22691195-22691312)
chr4 (20-168)||(38223089-38223235)
chr4 (46-164)||(6659417-6659535)
chr4 (17-80)||(19684792-19684855)
chr4 (19-100)||(54239554-54239635)
chr4 (51-131)||(34949082-34949162)
chr4 (17-69)||(2880170-2880221)
chr4 (98-169)||(24667566-24667637)
chr4 (285-350)||(38223311-38223376)
chr4 (289-353)||(4052884-4052948)
[»] chr2 (15 HSPs)
chr2 (17-154)||(8781408-8781543)
chr2 (47-164)||(2155851-2155968)
chr2 (46-164)||(22011316-22011438)
chr2 (46-164)||(27956241-27956360)
chr2 (46-164)||(27952405-27952524)
chr2 (47-157)||(2165814-2165924)
chr2 (19-168)||(18725654-18725802)
chr2 (23-121)||(44675286-44675385)
chr2 (17-168)||(22264315-22264465)
chr2 (19-100)||(5841251-5841332)
chr2 (258-353)||(18725852-18725946)
chr2 (46-148)||(33655526-33655630)
chr2 (46-157)||(31636228-31636339)
chr2 (47-157)||(31633995-31634105)
chr2 (260-340)||(8781262-8781340)
[»] chr6 (21 HSPs)
chr6 (50-164)||(29340897-29341012)
chr6 (255-353)||(2939946-2940043)
chr6 (34-168)||(2939768-2939900)
chr6 (19-168)||(3565618-3565763)
chr6 (21-138)||(11190408-11190524)
chr6 (255-353)||(19232062-19232160)
chr6 (17-157)||(2339110-2339246)
chr6 (46-164)||(3535919-3536036)
chr6 (46-164)||(3542130-3542247)
chr6 (45-164)||(30052086-30052206)
chr6 (255-352)||(13394436-13394532)
chr6 (17-104)||(13645868-13645955)
chr6 (17-167)||(19474681-19474828)
chr6 (45-164)||(30049799-30049919)
chr6 (17-154)||(26571045-26571180)
chr6 (19-69)||(8568651-8568701)
chr6 (88-157)||(19232216-19232283)
chr6 (19-100)||(27142537-27142618)
chr6 (10-78)||(19237035-19237103)
chr6 (285-353)||(2339336-2339404)
chr6 (258-350)||(3565476-3565568)
[»] chr8 (21 HSPs)
chr8 (46-157)||(23573474-23573585)
chr8 (46-157)||(22921937-22922049)
chr8 (46-164)||(22926735-22926852)
chr8 (17-140)||(18180741-18180865)
chr8 (46-164)||(42891751-42891870)
chr8 (46-132)||(22512133-22512219)
chr8 (46-131)||(23570500-23570586)
chr8 (285-353)||(26150419-26150487)
chr8 (23-100)||(2262692-2262769)
chr8 (27-168)||(38082155-38082295)
chr8 (46-128)||(22520886-22520968)
chr8 (46-164)||(6845221-6845338)
chr8 (68-168)||(26150570-26150669)
chr8 (12-132)||(4360858-4360979)
chr8 (17-78)||(12310831-12310892)
chr8 (19-80)||(15081538-15081599)
chr8 (17-100)||(9295281-9295364)
chr8 (46-132)||(37189783-37189868)
chr8 (48-164)||(42890281-42890392)
chr8 (21-91)||(10456259-10456329)
chr8 (93-128)||(18468598-18468633)
[»] chr1 (15 HSPs)
chr1 (260-368)||(42071581-42071688)
chr1 (47-164)||(13444076-13444193)
chr1 (28-132)||(12033620-12033724)
chr1 (28-132)||(40804576-40804679)
chr1 (46-164)||(50857531-50857650)
chr1 (17-127)||(42071380-42071489)
chr1 (46-157)||(13441686-13441797)
chr1 (20-107)||(45085687-45085774)
chr1 (47-126)||(12486314-12486392)
chr1 (46-141)||(8931127-8931222)
chr1 (17-98)||(42646624-42646701)
chr1 (19-132)||(16261529-16261641)
chr1 (99-168)||(49043907-49043977)
chr1 (22-76)||(50004128-50004182)
chr1 (22-78)||(11923859-11923915)
[»] scaffold0251 (1 HSPs)
scaffold0251 (21-140)||(8218-8337)
[»] scaffold0110 (2 HSPs)
scaffold0110 (47-164)||(46792-46910)
scaffold0110 (46-157)||(45349-45461)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 25857836 - 25857671
Alignment:
Q  6 aagcgtaagctagcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataa-----gggtttccgaaatctaccacaattgaga 100  Q
    ||||||||||||| ||||||||||||||||||||| |||  |||||||| ||||| |||||||||||     |||||||||||||| |||||||||||||    
T  25857836 aagcgtaagctagtgctaaacctaaaagataaacagaca--ttgcaagcaacaaatctatcaaataaaataagggtttccgaaatccaccacaattgaga 25857739  T
Q  101 gaaaagtctcgaatattattattgaataaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  25857738 gaaaagtctcaaatattattattgaataaaaagtgtgtctcttaggctacataagttatgcttaaata 25857671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 255 - 368
Target Start/End: Complemental strand, 25857559 - 25857446
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggcac 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  25857559 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcgggcctttagacgacctcgaatgactaaaataacccctacgtcatggcga 25857460  T
Q  355 aacgatgtgttttg 368  Q
    | ||||||||||||    
T  25857459 agcgatgtgttttg 25857446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 41218834 - 41218684
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    ||||||||| |||||||||||| | | | |||| |||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||||||||||||    
T  41218834 agcgctaaatctaaaagataaatagataggttgtaagcgacaaacctatcaaataaggctttccggaatccaccagaattgagagaaaagtctcgaatat 41218735  T
Q  117 tattattgaataaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  41218734 tattattgaat-aaaagtgtgtctcttaggctccataagttctgcttaaata 41218684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 3063824 - 3063942
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||||||| ||||||||| || |||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||  ||||||    
T  3063824 gttgcaagcgacaaacctatcaaaataagggttttcggaatcaaccagaattgagagaaaagtctcgaatattattaatgaat-aaaagtgtacctctta 3063922  T
Q  145 ggctgcataagttatgctta 164  Q
    |||| |||||||||||||||    
T  3063923 ggctacataagttatgctta 3063942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 4580593 - 4580476
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |  |||| || | ||||||||||||| ||||||||||    
T  4580593 agcgctaaacctaaaagataaacacacaggttgcaagcgacaaacctatcaaataagggttttcagaatccactagaattgagagaaaattctcgaatat 4580494  T
Q  117 tattattgaataaaaagtg 135  Q
    | ||||||||| |||||||    
T  4580493 t-ttattgaatgaaaagtg 4580476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 19950033 - 19949883
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||  | |||| | || |||||||||||||||||| |||||    
T  19950033 agcgctaaacctaaaagataaacagataagttgcaagcgacaaacttatcaaataagggtttttggaatccatcagaattgagagaaaagtctctaatat 19949934  T
Q  117 tattattgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    | ||||| ||| | ||||||   ||||||||||||||||||| || |||||||    
T  19949933 ttttattcaatgataaagtg--actcttaggctgcataagttctgtttaaata 19949883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 43304047 - 43304163
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||   || |||||||    
T  43304047 gttgcaagcgacaaacctattaaaataagggtttccgaaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaa---gtgtctctta 43304143  T
Q  145 ggctgcataagttatgctta 164  Q
    |||| |||||||| ||||||    
T  43304144 ggctacataagttctgctta 43304163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 53013025 - 53012910
Alignment:
Q  49 gcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttaggc 147  Q
    ||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||    
T  53013025 gcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaat-aaaagtgtgcctcttaggc 53012927  T
Q  148 tgcataagttatgctta 164  Q
    | ||| |||||||||||    
T  53012926 tacattagttatgctta 53012910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 3068962 - 3069080
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||||   |||||    
T  3068962 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccaaaattgagagaaaagtatcgaatattattaatgaat-aaaagtgtgcatctta 3069060  T
Q  145 ggctgcataagttatgctta 164  Q
    |||| |||||||||||||||    
T  3069061 ggctacataagttatgctta 3069080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 43306759 - 43306877
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||| ||||||||||| ||||| ||||||||  ||||||    
T  43306759 gttgcaagcgacaaacctatcaaaataagggtttccgtaatccaccagaattgagagaaaagtcttgaatattattaatgaat-aaaagtgtgcctctta 43306857  T
Q  145 ggctgcataagttatgctta 164  Q
    |||| |||||||| ||||||    
T  43306858 ggctacataagttctgctta 43306877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 20398458 - 20398573
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    ||||||||||||||||||||| || ||| ||||||||||||||  ||||||||||||||||| || |||| |||| |||||||| |||||||||||||||    
T  20398458 agcgctaaacctaaaagataatcagacaggttgcaagcgacaagtctatcaaataagggttttcggaatccaccagaattgagaaaaaagtctcgaatat 20398557  T
Q  117 tattattgaataaaaa 132  Q
    | || || ||||||||    
T  20398558 ttttcttaaataaaaa 20398573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 39913298 - 39913438
Alignment:
Q  28 taaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat 127  Q
    ||||||||||||| | |  ||| ||| |||||||||||||||||  ||  |||| |||| |||| ||||| ||||||||||||||||||| |||||||||    
T  39913298 taaaagataaacacatatattgtaagtgacaaacctatcaaatagaggggtccggaatccaccagaattgggagaaaagtctcgaatatttttattgaat 39913397  T
Q  128 aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
     |||| |||  ||||||||||||||||||| || |||||||    
T  39913398 caaaaatgtgcctcttaggctgcataagttctgtttaaata 39913438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 368
Target Start/End: Original strand, 39913484 - 39913596
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggcac 354  Q
    ||||||||||||| |||||||||| |||  ||||||||||||| ||||||  ||||| ||||||||||||||||||||||||| || | | ||||||||     
T  39913484 aacaaaatagaaaattctagaaaa-tgctgaaatattaaaaggtggtttcgagccttcagacgacctcgaatgactaaaataaaccattcatcatggcaa 39913582  T
Q  355 aacgatgtgttttg 368  Q
    |  |||||||||||    
T  39913583 agtgatgtgttttg 39913596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 5128911 - 5128820
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgt 136  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||| ||||||||| | ||||||||| |||||||||    
T  5128911 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgt 5128820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 33620071 - 33620215
Alignment:
Q  21 ctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattatt 120  Q
    ||||||||||||  |||||| ||||  ||||||||  |||||||||||||||||||||||  ||||  ||| ||||||||||||| ||||| ||||| ||    
T  33620071 ctaaacctaaaa--taaacagacaatctgcaagcgcaaaacctatcaaataagggtttccagaatcctccagaattgagagaaaaatctcg-atattttt 33620167  T
Q  121 attgaataaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||||| ||||   | |||||||||||| ||||||| || |||||||    
T  33620168 attgaattaaaaagatgtctcttaggctgtataagttttgtttaaata 33620215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 40593502 - 40593598
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaata 115  Q
    ||||||||||| |||| | ||||| ||  ||||||||||||||||||||||||||||||||| || |||| |||| ||||||||||||| |||||||||    
T  40593502 agcgctaaaccaaaaaaa-aaacagacgggttgcaagcgacaaacctatcaaataagggttttcggaatccaccaaaattgagagaaaa-tctcgaata 40593598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 4580395 - 4580312
Alignment:
Q  258 aaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccc 341  Q
    |||||||||| ||||||||| |||   |||||||||||||||||||| |||||| | ||||||||||||||||||  |||||||    
T  4580395 aaaatagaaaattctagaaatatgttgaaatattaaaaggcggtttcgggccttcatacgacctcgaatgactaatttaacccc 4580312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 25340146 - 25340224
Alignment:
Q  22 taaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    ||||||||||||||||||| ||| |||||| || |||||||||||||||||||||||| | |||| | || ||||||||    
T  25340146 taaacctaaaagataaacagacaggttgcacgcaacaaacctatcaaataagggtttctggaatccatcataattgaga 25340224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 33620291 - 33620356
Alignment:
Q  285 aaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatgg 351  Q
    |||||||||||||||||||| |||||| |||| |||| |||||| ||||||||||||||| ||||||    
T  33620291 aaatattaaaaggcggtttcgggccttcagactacct-gaatgattaaaataacccctacatcatgg 33620356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 20398687 - 20398755
Alignment:
Q  285 aaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    |||||||||||||||||||| || | | | |||||||||||||||||||||||| | ||| ||||||||    
T  20398687 aaatattaaaaggcggtttcgggtcatcaaacgacctcgaatgactaaaataactcatacttcatggca 20398755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 40594023 - 40594086
Alignment:
Q  286 aatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcat 349  Q
    ||||||||||||||||||| ||||||  ||  |||| |||||||||||||||||||||| ||||    
T  40594023 aatattaaaaggcggtttcgggccttatgattacctggaatgactaaaataacccctacatcat 40594086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 41218638 - 41218589
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttc 304  Q
    ||||||||||||| |||||||||| || | ||||||||||||||||||||    
T  41218638 aacaaaatagaaaattctagaaaagtgtagaaatattaaaaggcggtttc 41218589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 1151221 - 1151120
Alignment:
Q  28 taaaagataaacaaacaagtt-gcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaa 126  Q
    ||||||||||||| ||||||| |||||| |||||||||||||  |||||||| || |||| |||| ||||  |||||||||||| |  ||| ||||||||    
T  1151221 taaaagataaacagacaagtttgcaagcaacaaacctatcaa--aagggttttcggaatccaccagaatt--gagaaaagtctctataatttttattgaa 1151126  T
Q  127 taaaaa 132  Q
    | ||||    
T  1151125 tgaaaa 1151120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 19999345 - 19999439
Alignment:
Q  258 aaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    ||||||||||  ||||||| | ||| |||||||||||| || ||||  |||||| ||||||| || |||||| ||||| ||| |||||||||||||    
T  19999345 aaaatagaaaaatctagaata-tgcttaaatattaaaatgctgttttcggccttcagacgacttcaaatgaccaaaatcaccactacgtcatggca 19999439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 19795244 - 19795148
Alignment:
Q  55 gacaaacctat-caaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttaggctgcata 153  Q
    ||||||||||| |||||||||  || ||||||| |||| |||| |||||||| ||| ||||| | |||||||||||||| | | ||||||||||||||||    
T  19795244 gacaaacctatgcaaataagg--ttacgaaatccaccaaaatttagagaaaa-tctggaataattttattgaataaaaaat-tgtctcttaggctgcata 19795149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 1697061 - 1697109
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatca 67  Q
    |||||||| | ||||||||| | ||| ||||||||||||||||||||||    
T  1697061 cgctaaacatgaaagataaatagacaggttgcaagcgacaaacctatca 1697109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 31577241 - 31577391
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  31577241 agcgctaaacctaaaagataaacagataggttgcaagcgacaaacctatcaaataagggtttccgaaatccaccagaattgagagaaaagtcttgaatat 31577340  T
Q  117 tattattgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    | ||||||||| ||||||| || |||||||| |||||||||| || |||||||    
T  31577341 ttttattgaatgaaaaagt-tc-ctcttaggttgcataagttttgtttaaata 31577391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 4303481 - 4303341
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcg-acaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaata 115  Q
    |||||||||||||||||||||| | ||| |||||||||| |||||||||| |||||||||||| || |||| || | ||||||||||||| |||||||||    
T  4303481 agcgctaaacctaaaagataaagagacaggttgcaagcgaacaaacctattaaataagggttttcggaatccactagaattgagagaaaa-tctcgaata 4303383  T
Q  116 ttattattgaat-aaaaagtgtctctcttaggctgcataagt 156  Q
     | ||||||||| |||||||||  |||||||||| |||||||    
T  4303382 attttattgaatcaaaaagtgtgcctcttaggctacataagt 4303341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 5678275 - 5678420
Alignment:
Q  21 ctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattatt 120  Q
    |||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||| |||  | ||  |||| ||||||||||||||||||||||| | ||    
T  5678275 ctaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaataaggg-ttcacatatacaccagaattgagagaaaagtctcgaataatttt 5678373  T
Q  121 attgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||||| ||||||||  ||||||| |||||||||||| || |||||||    
T  5678374 attgaatgaaaaagtg--tctcttaagctgcataagttctgtttaaata 5678420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 5703327 - 5703472
Alignment:
Q  21 ctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattatt 120  Q
    |||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||| |||  | ||  |||| ||||||||||||||||||||||| | ||    
T  5703327 ctaaacttaaaagataaacagacaggttacaagcgacaaacctatcaaataaggg-ttcacatatacaccagaattgagagaaaagtctcgaataatttt 5703425  T
Q  121 attgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||||| ||||||||  ||||||| |||||||||||| || |||||||    
T  5703426 attgaatgaaaaagtg--tctcttaagctgcataagttctgtttaaata 5703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 4668229 - 4668374
Alignment:
Q  22 taaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattatta 121  Q
    ||||||||||||||||||| | | | || ||||||||||||||| ||||||||||||||  |||| |||  |||| |||||||||||||||||||| ||     
T  4668229 taaacctaaaagataaacagaaaggatgtaagcgacaaacctattaaataagggtttccataatccacctgaattaagagaaaagtctcgaatatttttt 4668328  T
Q  122 ttgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    || ||| ||||||||   |||||||||||||||||||||| |||||||    
T  4668329 ttcaatgaaaaagtg--cctcttaggctgcataagttatgtttaaata 4668374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 859243 - 859357
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||||||| ||| |||||||| |||| |||| |||||||||||||||||| |||||||||| ||||| ||||||||   | |||    
T  859243 gttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaat-aaaagtgtgcatttta 859341  T
Q  145 ggctgcataagttatg 160  Q
    |||| |||||||||||    
T  859342 ggctacataagttatg 859357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 160
Target Start/End: Original strand, 1217247 - 1217361
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||||||| ||| |||||||| |||| |||| |||||||||||||||||| |||||||||| ||||| ||||||||   | |||    
T  1217247 gttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaat-aaaagtgtgcatttta 1217345  T
Q  145 ggctgcataagttatg 160  Q
    |||| |||||||||||    
T  1217346 ggctacataagttatg 1217361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 22572447 - 22572530
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||| || | ||||||||    
T  22572447 agcgctaaacctaaaagataaacagacaggttgcaagcgacaaatctatcaaataagggtttccggaatccacaagaattgaga 22572530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 32053071 - 32052989
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    |||||||||||||||||||||||| |||| |||||||||||||| || ||||| |||||||||||||||| |||| ||||||||    
T  32053071 agcgctaaacctaaaagataaacagacaatttgcaagcgacaaatctgtcaaa-aagggtttccgaaatccaccagaattgaga 32052989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 5678460 - 5678557
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    |||||||||||||||||||||||| |||  ||||||||||||| | |||| |||||| |||||| |||| ||||||||||||| |||||| ||||||||    
T  5678460 aacaaaatagaaagttctagaaaa-tgctgaaatattaaaaggtgatttcgggccttcagacgatctcggatgactaaaataatccctacatcatggca 5678557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 5703512 - 5703609
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    |||||||||||||||||||||||| |||  ||||||||||||| | |||| |||||| |||||| |||| ||||||||||||| |||||| ||||||||    
T  5703512 aacaaaatagaaagttctagaaaa-tgctgaaatattaaaaggtgatttcgggccttcagacgatctcggatgactaaaataatccctacatcatggca 5703609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 13882773 - 13882890
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||| |||| |||| | ||||||||| ||||||||  ||||||    
T  13882773 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcaaataattttattgaatcaaaaagtg--tctctt 13882869  T
Q  144 aggctgcataagttatgctta 164  Q
    ||| | |||||||| ||||||    
T  13882870 aggatacataagttctgctta 13882890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 13886276 - 13886370
Alignment:
Q  47 ttgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctct 140  Q
    |||||||||||||||||||| ||||||||||||||  |||| |||| ||||||||||||| ||||||||  | ||||||||| |||||||||||||    
T  13886276 ttgcaagcgacaaacctatcaaaataagggtttccagaatccaccataattgagagaaaa-tctcgaatgattttattgaatcaaaaagtgtctct 13886370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 32936824 - 32936902
Alignment:
Q  22 taaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    ||||||||| || |||||||||||||||||||| |||||  | |||||||||||||| || |||| |||| ||||||||    
T  32936824 taaacctaagagctaaacaaacaagttgcaagcaacaaatatgtcaaataagggttttcggaatccaccataattgaga 32936902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 19677189 - 19677339
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||| ||||||||||||||| | | |||||||||||||||||| |||||||||||||| || |||| |||| ||||||||||||||||||||||||    
T  19677189 agcgctaagcctaaaagataaacagataggttgcaagcgacaaacctttcaaataagggttttcggaatccaccagaattgagagaaaagtctcgaatat 19677288  T
Q  117 tattattgaataaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    | |||||||||| |||||||  |||||||| |||||||||| || |||||||    
T  19677289 t-ttattgaatacaaagtgtgcctcttaggatgcataagttctgtttaaata 19677339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 19677386 - 19677477
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtc 347  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||| | |||| |||||||||  ||||||||||||||||||||||||    
T  19677386 aacaaaatagaaagttctagaaaaa-gctgaaatattaaaaggcggtttcggcccttcagacgacctaaaatgactaaaataacccctacgtc 19677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 40778873 - 40778992
Alignment:
Q  46 gttgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    ||||||||||||||||||||| ||||||||||||| | |||| |||| ||||||||||||| ||||||||| | ||||||||| |||||||||  |||||    
T  40778873 gttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctt 40778971  T
Q  144 aggctgcataagttatgctta 164  Q
    || || |||||||| ||||||    
T  40778972 agactacataagttctgctta 40778992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 35160790 - 35160848
Alignment:
Q  21 ctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttc 79  Q
    |||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  35160790 ctaaacctaaaagataaacagacaagttgcaaacgacaaacctgtcaaataagggtttc 35160848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 15385013 - 15385082
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatc 86  Q
    |||| ||||| ||||||||||||| |||||| |||||||||||| || | ||||||| ||||||||||||    
T  15385013 agcgttaaacttaaaagataaacagacaagtcgcaagcgacaaatctgttaaataagagtttccgaaatc 15385082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 7775442 - 7775386
Alignment:
Q  22 taaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggttt 78  Q
    ||||||||||||||||||| ||||||||||||| |||||||| ||||| || |||||    
T  7775442 taaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaaaaaaggttt 7775386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 14504149 - 14504086
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttcc 80  Q
    |||| |||||||| ||||||||  |||||||||||||| |||||||| ||||||||| ||||||    
T  14504149 agcgttaaacctagaagataaaacaacaagttgcaagcaacaaacctgtcaaataagagtttcc 14504086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 36844394 - 36844450
Alignment:
Q  22 taaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggttt 78  Q
    ||||||||| |||||| || |||| ||| ||| ||||||||| ||||||||||||||    
T  36844394 taaacctaagagataatcagacaaattgtaagtgacaaacctgtcaaataagggttt 36844450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 2053083 - 2053216
Alignment:
Q  34 ataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaag 133  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || | |||||||  |||||||||||||| | ||||||||| || |     
T  2053083 ataaacagacaagttgcaagcgacaaatctatcaaataagggtttccgaaatccactagaattgaggaaaaagtctcgaataattttattgaatgaata- 2053181  T
Q  134 tgtctctcttaggctgcataagttatgcttaaata 168  Q
     |||||||||||||||||||||||||| |||||||    
T  2053182 agtctctcttaggctgcataagttatgtttaaata 2053216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 13085150 - 13085286
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaata 115  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||||||| |||||||||||| || |||| |||| ||||||||||||| |||||||||    
T  13085150 agcgctaaacctaaaagataaactgacaggttgcaagcgacaaacctatcaaaataagggttttcggaatccaccaaaattgagagaaaa-tctcgaata 13085248  T
Q  116 ttattattgaataaaaagtgtctctcttaggctgcataa 154  Q
     | ||||||||||||||  || |||||||||||||||||    
T  13085249 attttattgaataaaaa-agtgtctcttaggctgcataa 13085286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 4053157 - 4053028
Alignment:
Q  37 aacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgt 136  Q
    |||||||| || |||||||||||||||||||| ||||| ||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||| |     
T  4053157 aacaaacatgtagcaagcgacaaacctatcaagtaaggattttcgaaatccaccataattgagagaaaagtctcgaatatttttattgaatgaaaagag- 4053059  T
Q  137 ctctcttaggctgcataagttatgcttaaata 168  Q
     ||||||||| |||||||||| || |||||||    
T  4053058 -tctcttaggttgcataagttttgtttaaata 4053028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 22716686 - 22716574
Alignment:
Q  20 gctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataa-gggtttccgaaatctaccacaattgagagaaaagtctcgaatatta 118  Q
    ||||||||||||| ||||||  ||| |||||||||||||||||||||||| || ||||||||| |||| |||| ||||||||||||||||||||||||||    
T  22716686 gctaaacctaaaatataaactgacaggttgcaagcgacaaacctatcaaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatatta 22716587  T
Q  119 ttattgaataaaa 131  Q
    ||| |||||||||    
T  22716586 ttaatgaataaaa 22716574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 22988531 - 22988643
Alignment:
Q  20 gctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatatta 118  Q
    |||||| |||||||||||||  ||| ||||||||||||||||||||| ||| ||||||||||| |||| |||| ||||||||||||||||||||||||||    
T  22988531 gctaaatctaaaagataaactgacaggttgcaagcgacaaacctatcgaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatatta 22988630  T
Q  119 ttattgaataaaa 131  Q
    ||| |||||||||    
T  22988631 ttaatgaataaaa 22988643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 9596972 - 9596857
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||||||||||||||||| | ||| ||||||| ||| |||||||||||||||||||||||  |||| |||| |||||||||||||||||| |||||    
T  9596972 agcgctaaacctaaaagataaaaagacaggttgcaaacgataaacctatcaaataagggtttccataatccaccagaattgagagaaaagtctcaaatat 9596873  T
Q  117 tattattgaataaaaa 132  Q
    | ||||||||| ||||    
T  9596872 tcttattgaatgaaaa 9596857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 22691312 - 22691195
Alignment:
Q  47 ttgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttag 145  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||| ||||| ||||||||  |||||||    
T  22691312 ttgcaagcgacaaacctatcgaaataagggtttccggaatccaccagaattgagagaaaagtcttgaatattattaatgaat-aaaagtgtgcctcttag 22691214  T
Q  146 gctgcataagttatgctta 164  Q
    ||| |||||||| ||||||    
T  22691213 gctacataagttctgctta 22691195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 38223089 - 38223235
Alignment:
Q  20 gctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattat 119  Q
    ||||||||||||||||||| | | | | ||||| ||||||||||||||||||||||||| |  |||| || | ||||  ||||||||||||||  ||| |    
T  38223089 gctaaacctaaaagataaatagataggctgcaaacgacaaacctatcaaataagggtttacagaatccactagaatt--gagaaaagtctcgataatttt 38223186  T
Q  120 tattgaataaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    |||||||| ||||  || ||||||||| ||||||||||||| |||||||    
T  38223187 tattgaatgaaaaaagtgtctcttaggttgcataagttatgtttaaata 38223235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 6659417 - 6659535
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||| ||||||||| | ||| ||||| ||||||| |  |||||    
T  6659417 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaatagttttagtgaatcaaaaagt-tgcctctt 6659514  T
Q  144 aggctgcataagttatgctta 164  Q
    ||||| |||||||| ||||||    
T  6659515 aggctacataagttctgctta 6659535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 19684792 - 19684855
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttcc 80  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  19684792 agcgctaaacctaaaagataaacagacagtttgcaagcgacaaacctatcaaacaagggtttcc 19684855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 54239635 - 54239554
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    |||||||||||| || |||||| ||||||| |||| |||||||||||||||||||||||| || |||| |||| ||||||||    
T  54239635 cgctaaacctaagaggtaaacagacaagttacaagggacaaacctatcaaataagggttttcggaatccaccaaaattgaga 54239554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 34949082 - 34949162
Alignment:
Q  51 aagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaa 131  Q
    |||||| |||||||| |||| |||||||| |||||| |||  | ||||||||||||||||||||||| |||||||||||||    
T  34949082 aagcgataaacctattaaattagggtttctgaaatccacccgatttgagagaaaagtctcgaatatttttattgaataaaa 34949162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 2880221 - 2880170
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaa 69  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  2880221 agcgctaaacctaaaagataaacaaacaagttgcaagc-acaaacctgtcaaa 2880170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 24667637 - 24667566
Alignment:
Q  98 agagaaaagtctcgaatattattattgaataaaaagtgtctctcttaggctgcataagttatgcttaaataa 169  Q
    |||||||||||||||||||||||| ||||  ||||||||  |||||||||| |||||||| |||||| ||||    
T  24667637 agagaaaagtctcgaatattattaatgaaataaaagtgtgcctcttaggctacataagttctgcttatataa 24667566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 38223311 - 38223376
Alignment:
Q  285 aaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatg 350  Q
    ||||||||||| | |||||  |||||| |||| |||||||||||||||| | ||||||||||||||    
T  38223311 aaatattaaaatgaggttttgggccttcagacaacctcgaatgactaaattcacccctacgtcatg 38223376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 4052948 - 4052884
Alignment:
Q  289 attaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    ||||||||| |||||| || ||| ||| ||||| ||||||||||||||| || |||| |||||||    
T  4052948 attaaaaggtggtttcgggtcttcagatgacctagaatgactaaaataatccatacggcatggca 4052884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 8781543 - 8781408
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||| |||||||||     
T  8781543 agcgctaaacctaaaagataaacagacaggttgcaagcgacaaacctatcaaataagggttt-cgaaatccaccagaattgagagtaaa-tctcgaataa 8781446  T
Q  117 tattattgaataaaaagtgtctctcttaggctgcataa 154  Q
    | ||||||||| ||||  ||  ||||||||||||||||    
T  8781445 ttttattgaatgaaaaaagtgcctcttaggctgcataa 8781408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 2155968 - 2155851
Alignment:
Q  47 ttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttag 145  Q
    ||||||||||||||||||||||| ||||||||| || |||| | || ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  2155968 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcagaattgagagaaaagtcttgaatattattattgaat-aaaagtgtgtctcttag 2155870  T
Q  146 gctgcataagttatgctta 164  Q
    |||||||||||| ||||||    
T  2155869 gctgcataagttctgctta 2155851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 22011438 - 22011316
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaa---aagtgtctctc 141  Q
    |||| ||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||||||   ||||   ||||    
T  22011438 gttggaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaataaaagtcggtctc 22011339  T
Q  142 ttaggctgcataagttatgctta 164  Q
    ||||||| |||||||| ||||||    
T  22011338 ttaggctacataagttttgctta 22011316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 27956241 - 27956360
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    |||||||||||||||||||| ||| |||||||||||| |||| |||| ||||||||||||| ||||||||| | ||||||||| |||||||||  |||||    
T  27956241 gttgcaagcgacaaacctatgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctt 27956339  T
Q  144 aggctgcataagttatgctta 164  Q
    ||||| |||||||| ||||||    
T  27956340 aggctacataagttctgctta 27956360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 27952405 - 27952524
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    |||||||||||||||||| | ||| |||||||||||| |||| |||| ||||||||||||| ||||||||| | ||||||||| |||||||||  |||||    
T  27952405 gttgcaagcgacaaacctttgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctt 27952503  T
Q  144 aggctgcataagttatgctta 164  Q
    ||||| |||||||| ||||||    
T  27952504 aggctacataagttctgctta 27952524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 2165924 - 2165814
Alignment:
Q  47 ttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttag 145  Q
    |||||||| |||||| ||||||| |||  |||| |  |||| |||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  2165924 ttgcaagcaacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa-tgtgtctcttag 2165826  T
Q  146 gctgcataagtt 157  Q
    ||||||||||||    
T  2165825 gctgcataagtt 2165814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 18725654 - 18725802
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatatta 118  Q
    |||||||| ||||||||||||| ||| | ||||||||||||||||||||||||| |||||| | | || || | |||| |||||||||| || |||| |     
T  18725654 cgctaaacttaaaagataaacagacaggctgcaagcgacaaacctatcaaataaaggtttctggattccactaaaattaagagaaaagtttcaaataatt 18725753  T
Q  119 ttattgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||||||| ||||||||  |||||||| | ||||||||| || |||||||    
T  18725754 ttattgaatgaaaaagtg--tctcttagaccgcataagttttgtttaaata 18725802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 44675286 - 44675385
Alignment:
Q  23 aaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagag-aaaagtctcgaatattatta 121  Q
    |||| ||||||||||||| ||| ||||||||||||| ||||||||||||||||||| || |||| |||| ||||||||| |||||| ||||||| |||||    
T  44675286 aaacataaaagataaacagacaggttgcaagcgacatacctatcaaataagggttttcggaatccaccagaattgagagaaaaagtttcgaatactatta 44675385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 22264465 - 22264315
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||| ||||||||| ||||||| | ||| |||||||| |||||||||||| ||||| ||||||   |||| | || |||||||| |||| |||||||||     
T  22264465 agcgttaaacctaatagataaagagacaggttgcaagagacaaacctatcgaataaaggtttctagaatccatcagaattgagataaaa-tctcgaataa 22264367  T
Q  117 tattattgaat-aaaaagtgtctctcttaggctgcataa-gttatgcttaaata 168  Q
    | ||||||||| ||||||||   |||||||||||||||| ||||||||||||||    
T  22264366 ttttattgaatcaaaaagtg--cctcttaggctgcataatgttatgcttaaata 22264315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 5841332 - 5841251
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||||| || |||| || | ||||||||    
T  5841332 cgctaaacctaaaagataaacatacaagttgcaagcgacaaacctgtcaaacaggggttttcggaatccacaagaattgaga 5841251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 353
Target Start/End: Original strand, 18725852 - 18725946
Alignment:
Q  258 aaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    ||||||||||||||||||| | |||  |||||||||||||||||||| |||||| |||||| ||||||| |||||| ||||| || | ||||||||    
T  18725852 aaaatagaaagttctagaata-tgctgaaatattaaaaggcggtttcgggccttcagacgatctcgaattactaaattaacctctgcatcatggca 18725946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 33655630 - 33655526
Alignment:
Q  46 gttgcaagcgacaaacctatc-aaataagggtttccgaaatctacca-caattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctct 142  Q
    ||||||| ||||||||||||| ||||||||||||||| |||| ||||  ||||||||||||| ||||||||| | ||||||||| |||||||||  ||||    
T  33655630 gttgcaaacgacaaacctatcaaaataagggtttccggaatccaccagaaattgagagaaaa-tctcgaataattttattgaatgaaaaagtgtgcctct 33655532  T
Q  143 taggct 148  Q
    ||||||    
T  33655531 taggct 33655526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 31636339 - 31636228
Alignment:
Q  46 gttgcaagcgacaaacctatc-aaataagggtttccgaaatctacca-caattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctt 143  Q
    ||||||||||||||||||||| ||||||||| ||||| |||| ||||  ||||||||||||| ||| ||||||||||| ||||||||||   | ||||||    
T  31636339 gttgcaagcgacaaacctatcaaaataaggg-ttccggaatccaccagaaattgagagaaaa-tcttgaatattattaatgaataaaaaagttgtctctt 31636242  T
Q  144 aggctgcataagtt 157  Q
     |||| ||||||||    
T  31636241 cggctacataagtt 31636228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 31634105 - 31633995
Alignment:
Q  47 ttgcaagcgacaaacctatc-aaataagggtttccgaaatctacca-caattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||| |||||||||||| || |||| ||||  ||||||||||||| |||| |||||||||| ||||||||||   |  |||||     
T  31634105 ttgcaagcgacaaacctatcaaaataagggttt-cggaatccaccagaaattgagagaaaa-tctcaaatattattaatgaataaaaaagttgcctcttc 31634008  T
Q  145 ggctgcataagtt 157  Q
    |||||||||||||    
T  31634007 ggctgcataagtt 31633995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 8781340 - 8781262
Alignment:
Q  260 aatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataaccc 340  Q
    ||||||||||||||||||  |  | ||||||||||||| |||||| |||||| | |||||||||||| |||||||||||||    
T  8781340 aatagaaagttctagaaatttcta-aaatattaaaaggaggtttc-ggccttcaaacgacctcgaataactaaaataaccc 8781262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 29340897 - 29341012
Alignment:
Q  50 caagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttaggct 148  Q
    |||||||||||||||||||| ||| |||||||| |||| || | ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||    
T  29340897 caagcgacaaacctatcaaaataaaggtttccggaatccactagaattgagagaaaagtctcgaatattattaatgaataaaaagtgtttgtcttaggct 29340996  T
Q  149 gcataagttatgctta 164  Q
    ||||||||| ||||||    
T  29340997 gcataagttctgctta 29341012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 2939946 - 2940043
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    ||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||||    
T  2939946 aacaaaatagaaagttcta-aaaaatgcaaaaatactaaaaggcggtttcgggccttcagacgacctcgactgactaaaataacccctacatcatggca 2940043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 2939768 - 2939900
Alignment:
Q  34 ataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaa 132  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||  | | ||||||| ||||||||| |||||    
T  2939768 ataaacagacatgttgcaagcgacaaacctatcaaataa-ggttttcgaaatccaccataattgagagaaattttttgaatatt-ttattgaatgaaaaa 2939865  T
Q  133 gtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||| ||||||||||||||||||| ||||||||||    
T  2939866 gtgtc-ctcttaggctgcataagttctgcttaaata 2939900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 3565763 - 3565618
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatatta 118  Q
    |||||||| ||||||||||   |||| |||| |||||| |||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||     
T  3565763 cgctaaacttaaaagataac--aacaggttgtaagcgataaacctatcaaataagagtttccaaaatccaccagaattgagagaaaagtctcgaatattt 3565666  T
Q  119 ttattgaataaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||||||| |||||||   ||||| |||| |||||||| || |||||||    
T  3565665 ttattgaatgaaaagtg--cctctttggctacataagttctgtttaaata 3565618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 11190524 - 11190408
Alignment:
Q  21 ctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattatt 120  Q
    |||||||||||| ||||| | ||| ||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||||| ||||||||| | ||    
T  11190524 ctaaacctaaaatataaagagacaggttgcaagcgacaaacctatcaaataa-ggtttccggaatccaccagaattgagagaaaa-tctcgaataatttt 11190427  T
Q  121 attgaat-aaaaagtgtct 138  Q
    ||||||| |||||||||||    
T  11190426 attgaatcaaaaagtgtct 11190408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 19232160 - 19232062
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    |||||||||||||||||||||||| | || ||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||| |  |||||||||    
T  19232160 aacaaaatagaaagttctagaaaattacagaaatattaaaaggcgatttcgagccttcagacgacctcgaatgactaaaataacccatgtgtcatggca 19232062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 2339110 - 2339246
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    ||||||||||||||||  |||||| ||| | ||||||| ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |||     
T  2339110 agcgctaaacctaaaa--taaacagacaggctgcaagc-acaaatctatcaaataagggtttccgaaatccaccagaattgagagaaaagtctcg-ataa 2339205  T
Q  117 tattattgaataaaaagtgtctctcttaggctgcataagtt 157  Q
    | ||||||||| ||||   |  |||||||||||||||||||    
T  2339206 ttttattgaatgaaaaagatgcctcttaggctgcataagtt 2339246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 3536036 - 3535919
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaa-ttgagagaaaagtctcgaatattattattgaataaaaagtgtctctctt 143  Q
    |||||||||||||||||||||||| |||||||| ||| |||| |||| || ||||||||||| ||||||||||||||| ||||||||| ||||  |||||    
T  3536036 gttgcaagcgacaaacctatcaaaataagggtt-ccggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaa-gtgtgcctctt 3535940  T
Q  144 aggctgcataagttatgctta 164  Q
    |||||||||||||| ||||||    
T  3535939 aggctgcataagttctgctta 3535919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 3542247 - 3542130
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaa-ttgagagaaaagtctcgaatattattattgaataaaaagtgtctctctt 143  Q
    |||||||||||||||||||||||| |||||||| ||| |||| |||| || ||||||||||| ||||||||||||||| ||||||||| ||||  |||||    
T  3542247 gttgcaagcgacaaacctatcaaaataagggtt-ccggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaa-gtgtgcctctt 3542151  T
Q  144 aggctgcataagttatgctta 164  Q
    |||||||||||||| ||||||    
T  3542150 aggctgcataagttctgctta 3542130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 30052206 - 30052086
Alignment:
Q  45 agttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaa-ttgagagaaaagtctcgaatattattattgaataaaaa-gtgtctctc 141  Q
    ||||||||||||||||||||||||| | |||||| ||| |||| |||| || ||||||||||| ||||||||||||||| |||||||||| |||| ||||    
T  30052206 agttgcaagcgacaaacctatcaaaattagggtt-ccggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgtgtctc 30052109  T
Q  142 ttaggctgcataagttatgctta 164  Q
    ||| |||||||||||| ||||||    
T  30052108 ttaagctgcataagttttgctta 30052086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 13394436 - 13394532
Alignment:
Q  255 aacaaaatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggc 352  Q
    ||||||||| |||||||||||||| |||  |||||| || |||||||||| | |||| ||| ||||||||||||||||| ||||||||||||||||||    
T  13394436 aacaaaataaaaagttctagaaaa-tgctgaaatatcaataggcggtttcggaccttcagatgacctcgaatgactaaactaacccctacgtcatggc 13394532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 13645868 - 13645955
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaa 104  Q
    |||||| | ||||||||||||||| |||  |||||||| |||||||||| ||||||||||||||| |||||| || ||||||||||||    
T  13645868 agcgcttagcctaaaagataaacagacagattgcaagcaacaaacctattaaataagggtttccggaatctaacagaattgagagaaa 13645955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 19474681 - 19474828
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    ||||||||| |||||||||||||| | | |||||||| ||||||||||| |||||||||||| ||||||| || | ||||  ||||||| | ||||  ||    
T  19474681 agcgctaaagctaaaagataaacatataggttgcaagagacaaacctattaaataagggttttcgaaatccactagaatt-tgagaaaaatatcgataat 19474779  T
Q  117 tattattgaataaaaagtgtctctcttaggctgcataagttatgcttaaat 167  Q
    | ||||||||| |||||| || ||||||| ||||||||||| || ||||||    
T  19474780 ttttattgaatgaaaagt-tc-ctcttagactgcataagttctgtttaaat 19474828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 30049919 - 30049799
Alignment:
Q  45 agttgcaagcgacaaacctatc-aaataagggtttccgaaatctacc-acaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctc 141  Q
    |||||||||||||||||||||| |||| |||| ||||| |||| ||| | ||||||||||||| ||||||||||||||| ||||| ||||||||| ||||    
T  30049919 agttgcaagcgacaaacctatcaaaattaggg-ttccggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgtgtctc 30049822  T
Q  142 ttaggctgcataagttatgctta 164  Q
    ||| |||| ||||||| ||||||    
T  30049821 ttaagctgaataagttttgctta 30049799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 26571180 - 26571045
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||||| ||||||||||| | ||| ||||||||||||||| |||| ||||| |||||| || ||||  | | ||||||||||||| |||||||||     
T  26571180 agcgctaaacttaaaagataaatagacaggttgcaagcgacaaatctattaaataggggttttcggaatccgctagaattgagagaaaa-tctcgaataa 26571082  T
Q  117 tattattgaat-aaaaagtgtctctcttaggctgcataa 154  Q
    | ||||||||| || |||||   ||||||||||||||||    
T  26571081 ttttattgaatgaataagtg--gctcttaggctgcataa 26571045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 8568651 - 8568701
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaa 69  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  8568651 cgctaaacctaaaagataaacagacaagttgcaagctacaaacctgtcaaa 8568701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 19232283 - 19232216
Alignment:
Q  88 accacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttaggctgcataagtt 157  Q
    |||| |||||||| |||||||||||||||| |||||||||  ||||||| |||| |||||||||||||||    
T  19232283 accaaaattgagataaaagtctcgaatattgttattgaat--aaagtgtgtctcgtaggctgcataagtt 19232216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 27142537 - 27142618
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    |||||||||||| ||||||| | |||||||||||||||||||||  |||| ||||||| || | |||| |||| ||||||||    
T  27142537 cgctaaacctaagagataaatagacaagttgcaagcgacaaaccagtcaattaagggtatctggaatccaccataattgaga 27142618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 19237103 - 19237035
Alignment:
Q  10 gtaagctagcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggttt 78  Q
    |||||| | |||||||||||||||||||||||| | ||||||||||| |||  ||| ||||||||||||    
T  19237103 gtaagcaaacgctaaacctaaaagataaacaaataggttgcaagcgataaatatattaaataagggttt 19237035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 2339336 - 2339404
Alignment:
Q  285 aaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    ||||||||||| ||| |||| | | || ||||||||||||||||||||||||| |||||| || |||||    
T  2339336 aaatattaaaatgcgatttcggacgttcagacgacctcgaatgactaaaataagccctacatcttggca 2339404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 350
Target Start/End: Complemental strand, 3565568 - 3565476
Alignment:
Q  258 aaaatagaaagttctagaaaaatgcataaatattaaaaggcggttt-caggcctttagacgacctcgaatgactaaaataacccctacgtcatg 350  Q
    |||||| |||||||||||| | |||  || |||||||| ||||||| | |||||| |||||||||||||||| |||| |||| ||||| |||||    
T  3565568 aaaatataaagttctagaata-tgctgaagtattaaaacgcggttttcgggccttcagacgacctcgaatgattaaattaactcctacatcatg 3565476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 23573585 - 23573474
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||||| ||||| ||||||||  ||||||    
T  23573585 gttgcaagcgacaaacctatcaaaataagggtttccgaaatccacctaaattgagagaaaagtctcgaatattattaatgaat-aaaagtgtgcctctta 23573487  T
Q  145 ggctgcataagtt 157  Q
    |||| ||||||||    
T  23573486 ggctacataagtt 23573474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 22921937 - 22922049
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||| ||||||||| | ||||||||| |||| |||| ||||||    
T  22921937 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaggtgtgtctctt 22922035  T
Q  144 aggctgcataagtt 157  Q
    ||||||||||||||    
T  22922036 aggctgcataagtt 22922049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 22926735 - 22926852
Alignment:
Q  46 gttgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    ||||||||||||||||||||| ||||||||||||| | |||| |||| ||||||||||||| ||||||||||| |||||||||  ||| ||| |||||||    
T  22926735 gttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaatatttttattgaat-taaattgtgtctctta 22926832  T
Q  145 ggctgcataagttatgctta 164  Q
    ||||||||||||| ||||||    
T  22926833 ggctgcataagttctgctta 22926852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 18180741 - 18180865
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaata 115  Q
    ||||||||||||||| |||||||  ||| ||||||||||||||||||||| ||||||||||||||  |||| |||| ||||||||||||| |||||||||    
T  18180741 agcgctaaacctaaaggataaactgacatgttgcaagcgacaaacctatcaaaataagggtttccagaatccaccagaattgagagaaaa-tctcgaata 18180839  T
Q  116 ttattattgaat-aaaaagtgtctct 140  Q
     | ||||||||| |||||||| ||||    
T  18180840 attttattgaatcaaaaagtgcctct 18180865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 42891751 - 42891870
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||| |||| |||| | ||||||||| |||||||||  |||||    
T  42891751 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcaaataattttattgaatcaaaaagtgtgcctctt 42891849  T
Q  144 aggctgcataagttatgctta 164  Q
    ||||| |||||||| ||||||    
T  42891850 aggctacataagttctgctta 42891870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 22512133 - 22512219
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaa 132  Q
    |||||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||| | ||||||||||||||    
T  22512133 gttgcaagtgacaaacctatcaaaataagggtttccgaaatccaccagaattgagagaaaa-tctcgaataattttattgaataaaaa 22512219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 23570586 - 23570500
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaa 131  Q
    |||||||||||||||||||||||| |||||||||||  |||  |||| ||||||||||||||||||||||||||||  |||||||||    
T  23570586 gttgcaagcgacaaacctatcaaaataagggtttccagaatgcaccagaattgagagaaaagtctcgaatattatttatgaataaaa 23570500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 26150487 - 26150419
Alignment:
Q  285 aaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggca 353  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  26150487 aaatattaaaagggggtttccggccttcagacgacctcgaatgactaaaataacccatacatcatggca 26150419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 2262769 - 2262692
Alignment:
Q  23 aaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    |||| |||||||||||||||||||||||||||||||||| | | |||||||||||| || ||||||| | ||||||||    
T  2262769 aaacttaaaagataaacaaacaagttgcaagcgacaaacttgtaaaataagggttttcggaatctactaaaattgaga 2262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 38082155 - 38082295
Alignment:
Q  27 ctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaa 126  Q
    |||||||||||||| | | |||||||||||||||| ||||||||||||||||| | |||||| || |||||||| |||  ||||||  ||| ||||||||    
T  38082155 ctaaaagataaacagagaggttgcaagcgacaaacatatcaaataagggtttcaggaatctatcagaattgaga-aaagttctcgataatttttattgaa 38082253  T
Q  127 taaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    | ||||  ||  |||||||||| |  |||||||| |||||||    
T  38082254 tgaaaaaagtgcctcttaggctacgaaagttatgtttaaata 38082295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 22520886 - 22520968
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaata 128  Q
    |||||||| ||||||||||||||| |||||||||||| |||| |||| ||||||||||||| ||||||||| | ||||||||||    
T  22520886 gttgcaagtgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaata 22520968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 6845338 - 6845221
Alignment:
Q  46 gttgcaagcgacaaacctatc-aaataagggtttccgaaatctacc-acaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctct 142  Q
    ||||||||||||||||||||| |||||||||||| || |||| ||| | ||||||||||||| ||||||||||||||| ||||| ||||||||  |||||    
T  6845338 gttgcaagcgacaaacctatcaaaataagggttt-cggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaatcaaaaagtg--tctct 6845243  T
Q  143 taggctgcataagttatgctta 164  Q
    |||| | |||||||| ||||||    
T  6845242 taggatacataagttctgctta 6845221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 26150669 - 26150570
Alignment:
Q  68 aataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaa 166  Q
    ||||||| |||||  |||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||   |||||| |||||||||||| || |||||    
T  26150669 aataaggatttccagaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaaagtg--cctcttaagctgcataagttttgtttaaa 26150572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 4360858 - 4360979
Alignment:
Q  12 aagctagcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgag-agaaaagtctc 110  Q
    |||| |||| ||||| ||||||||||| | ||| |||||||||||||||||||| |||||| ||||||   |||| | |  ||||||| | |||||||||    
T  4360858 aagcaagcgttaaacttaaaagataaatacacaggttgcaagcgacaaacctattaaataaaggtttctagaatccatcgaaattgagaaaaaaagtctc 4360957  T
Q  111 gaatattattattgaataaaaa 132  Q
    ||||||| ||||||||| ||||    
T  4360958 gaatatttttattgaatgaaaa 4360979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 12310892 - 12310831
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggttt 78  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||||| ||| ||||||||    
T  12310892 agcgctaaacctaaaagataaacagacaagttgtgagcgacaaacctataaaaaaagggttt 12310831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 15081599 - 15081538
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttcc 80  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||| |||||||| |||||||    
T  15081599 cgctaaacataagagataaacacacaagttgcaagcgacaaacctgtcaaataaaggtttcc 15081538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 9295364 - 9295281
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgaga 100  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||| || ||||||| | ||||| | |||| |||| ||||||||    
T  9295364 agcgctaaatctaagagataaacagacaagttgcaagcgacaaatctgtcaaatatgagtttctggaatccaccagaattgaga 9295281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 37189868 - 37189783
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaa 132  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||| || |  ||||||| ||||||||||||||| ||||||||||    
T  37189868 gttgcaagcgacaaacctatcaaaataagggtt-ccgaaatccaccagaaatt-gagaaaaatctcgaatattattaatgaataaaaa 37189783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 42890392 - 42890281
Alignment:
Q  48 tgcaagcgacaaacctatc-aaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctcttag 145  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||      |||||||| ||||||||| | ||||||||| |||||||||  |||||||    
T  42890392 tgcaagcgacaaacctatcaaaataagggtttccggaatccacca------agagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctcttag 42890300  T
Q  146 gctgcataagttatgctta 164  Q
    ||| |||||||| ||||||    
T  42890299 gctacataagttttgctta 42890281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 10456259 - 10456329
Alignment:
Q  21 ctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctacca 91  Q
    ||||| |||||||||||| | | |||||||||||||||||||| ||||| |||||||||| ||||| ||||    
T  10456259 ctaaatctaaaagataaatagataagttgcaagcgacaaacctgtcaaaaaagggtttccaaaatccacca 10456329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 18468633 - 18468598
Alignment:
Q  93 aattgagagaaaagtctcgaatattattattgaata 128  Q
    ||||||||||||||||||||||||||||| ||||||    
T  18468633 aattgagagaaaagtctcgaatattattaatgaata 18468598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 42071581 - 42071688
Alignment:
Q  260 aatagaaagttctagaaaaatgcataaatattaaaaggcggtttcaggcctttagacgacctcgaatgactaaaataacccctacgtcatggcacaacga 359  Q
    ||||||||||||||||||  |||  |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| | |||    
T  42071581 aatagaaagttctagaaat-tgctaaaatattaaaaggcggtttcgggccttcagacgacctcgaatgactaaaataacccctacatcatggcaaagcga 42071679  T
Q  360 tgtgttttg 368  Q
    || ||||||    
T  42071680 tgagttttg 42071688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 13444076 - 13444193
Alignment:
Q  47 ttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctcttag 145  Q
    ||||||||||||||| ||||||| |||||||||||| |||| |||| |||||||||||||||||| |||||||||| |||||||||| |||  |||||||    
T  13444076 ttgcaagcgacaaacatatcaaaataagggtttccgtaatccaccagaattgagagaaaagtctctaatattattactgaataaaaa-tgtgcctcttag 13444174  T
Q  146 gctgcataagttatgctta 164  Q
    ||| |||||||| ||||||    
T  13444175 gctacataagttctgctta 13444193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 12033620 - 12033724
Alignment:
Q  28 taaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat 127  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| |  |||| |  | ||||||||||||||||||||||||| ||||| |||    
T  12033620 taaaagataaacaaacaagttgcaagcgacaaacttatcaaatgagggtttacataatccattagaattgagagaaaagtctcgaatatttttattaaat 12033719  T
Q  128 aaaaa 132  Q
    |||||    
T  12033720 aaaaa 12033724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 40804679 - 40804576
Alignment:
Q  28 taaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat 127  Q
    |||||||||| |||| |  ||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||| |||||||||||    
T  40804679 taaaagataagcaaaaagattgcaagcgacaaacctatcaaatacgggtttccaaaatccaccagaattgagagaaaagtctcgaata-tattattgaat 40804581  T
Q  128 aaaaa 132  Q
     ||||    
T  40804580 gaaaa 40804576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 50857531 - 50857650
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctctt 143  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||||||| ||||||||| | |||||| || |||||||||  |||||    
T  50857531 gttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgtatcaaaaagtgtgcctctt 50857629  T
Q  144 aggctgcataagttatgctta 164  Q
    |||||||||||||| ||||||    
T  50857630 aggctgcataagttctgctta 50857650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 42071380 - 42071489
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatat 116  Q
    |||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||| | |||| | || |||||||||| || |||||||||     
T  42071380 agcgctaaacctaaaagataaacagacatgttacaagtgacaaacctatcaaataagcgtttctggaatccatcataattgagagagaa-tctcgaataa 42071478  T
Q  117 tattattgaat 127  Q
    | |||||||||    
T  42071479 ttttattgaat 42071489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 13441686 - 13441797
Alignment:
Q  46 gttgcaagcgacaaacctatcaaa-taagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaataaaaagtgtctctctta 144  Q
    ||||||||||| |||||||| ||| ||||| |||||| |||| | || |||||||||||||||||| |||||||||| ||||| ||||||||  ||||||    
T  13441686 gttgcaagcgaaaaacctattaaaataaggatttccggaatccatcagaattgagagaaaagtctctaatattattaatgaat-aaaagtgtgcctctta 13441784  T
Q  145 ggctgcataagtt 157  Q
    ||||  |||||||    
T  13441785 ggctatataagtt 13441797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 45085774 - 45085687
Alignment:
Q  20 gctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagt 107  Q
    ||||||||||||||||||||| |||||||||||||||||||  |    |||||| |||| ||||||| |||| |||||||||||||||    
T  45085774 gctaaacctaaaagataaacagacaagttgcaagcgacaaatattgacaataagagttttcgaaatccaccagaattgagagaaaagt 45085687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 12486314 - 12486392
Alignment:
Q  47 ttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattattattgaa 126  Q
    |||||||| |||||||||| |||||||||||| || |||| |||| ||||||||||||| ||||||||| | ||||||||    
T  12486314 ttgcaagcaacaaacctattaaataagggttttcggaatccaccaaaattgagagaaaa-tctcgaataattttattgaa 12486392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 8931222 - 8931127
Alignment:
Q  46 gttgcaagcgacaaacctatcaa-ataagggtttccgaaatctacca-caattgagagaaaagtctcgaatattattattgaataaaaagtgtctctc 141  Q
    ||||||||||||||||||||||| ||||||| ||||| |||| ||||  ||||||||||||| ||||||||||||||| |||  ||||||||| ||||    
T  8931222 gttgcaagcgacaaacctatcaatataaggg-ttccggaatccaccagaaattgagagaaaa-tctcgaatattattaatgataaaaaagtgtgtctc 8931127  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 42646701 - 42646624
Alignment:
Q  17 agcgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattga 98  Q
    |||||||||| |||||||||||||| |    ||||| |||||||||||||||||||||||||||  |||| |||| ||||||    
T  42646701 agcgctaaacataaaagataaacaagc----tgcaaacgacaaacctatcaaataagggtttccagaatccaccaaaattga 42646624  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 16261641 - 16261529
Alignment:
Q  19 cgctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatatta 118  Q
    ||||||| |||||||||||| ||||| |||  || ||| |||| ||||||||||| ||||  |||||| | |  |||||| | |||||||||| ||| ||    
T  16261641 cgctaaatctaaaagataaataaacaggttataatcgataaacgtatcaaataagagtttttgaaatccatcgaaattgataaaaaagtctcg-ataata 16261543  T
Q  119 ttattgaataaaaa 132  Q
    ||||||||||||||    
T  16261542 ttattgaataaaaa 16261529  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 49043977 - 49043907
Alignment:
Q  99 gagaaaagtctcgaatattattattgaat-aaaaagtgtctctcttaggctgcataagttatgcttaaata 168  Q
    ||||||||||||||  ||| ||||||||| |||||  || |||||||| |||||||||||||| |||||||    
T  49043977 gagaaaagtctcgataatttttattgaatgaaaaaaagtgtctcttagactgcataagttatgtttaaata 49043907  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 50004128 - 50004182
Alignment:
Q  22 taaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggt 76  Q
    |||| |||||||||||| | ||| ||||||| | |||||||||||||||||||||    
T  50004128 taaatctaaaagataaatagacaggttgcaaacaacaaacctatcaaataagggt 50004182  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 11923915 - 11923859
Alignment:
Q  22 taaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggttt 78  Q
    ||||||||||||||||||| |||| ||| |||| |||||||| ||||| || |||||    
T  11923915 taaacctaaaagataaacagacaatttgtaagctacaaacctgtcaaaaaaaggttt 11923859  T

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Target: scaffold0251 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 8218 - 8337
Alignment:
Q  21 ctaaacctaaaagataaacaaacaagttgcaagcgacaaacctatcaaataagggtttccgaaatctaccacaattgagagaaaagtctcgaatattatt 120  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| | |||| | || |||||||| |||  ||||||| ||| |     
T  8218 ctaaacctagaagataaacagacaagttgcaagcgacaaacctgtcaaataagggtttctggaatccatcagaattgagaaaaagatctcgaaaatt-tg 8316  T
Q  121 attgaat-aaaaagtgtctct 140  Q
    ||||||| |||||||||||||    
T  8317 attgaatgaaaaagtgtctct 8337  T

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Target: scaffold0110 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 46792 - 46910
Alignment:
Q  47 ttgcaagcgacaaacctatcaaa--taagggtttccgaaatctacc-acaattgagagaaaagtctcgaatattattattgaat-aaaaagtgtctctct 142  Q
    |||||||||||||||||||||||  |||||  ||||| |||| ||| | ||||||||||||| ||||||||||||||| ||||| ||||||||| |||||    
T  46792 ttgcaagcgacaaacctatcaaaattaagg--ttccggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgtgtctct 46888  T
Q  143 taggctgcataagttatgctta 164  Q
    || |||| ||||||| ||||||    
T  46889 taagctggataagttttgctta 46910  T

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Target: scaffold0110; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 45349 - 45461
Alignment:
Q  46 gttgcaagcgacaaacctatc-aaataagggtttccgaaatctacca-caattgagagaaaagtctcgaatattattattgaataaaaa-gtgtctctct 142  Q
    ||||||||||||||||||||| ||||||||| ||||  |||| ||||  ||||||||||||| ||||||||||||||| |||||||||| || |  ||||    
T  45349 gttgcaagcgacaaacctatcaaaataaggg-ttccagaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaaatgtttgcctct 45446  T
Q  143 taggctgcataagtt 157  Q
    |||||||||||||||    
T  45447 taggctgcataagtt 45461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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