View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_low_14 (Length: 343)
Name: NF1723_low_14
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 4726117 - 4726402
Alignment:
| Q |
16 |
aaaatatgaaa-tacatgaataaaattttgaacataccttatagcgagtaacaaggtttttccacttgcacttacactgttctgcacttctatgataacc |
114 |
Q |
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| T |
4726117 |
aaaatatgaaaatatatgaataaaattttgaacataccttatagcgagtaacaaggtttttccacttgcacttacactgttctgcacttctatgataacc |
4726216 |
T |
|
| Q |
115 |
cttttccttcatatggttggaaataacttcccacaactgtttgtttcttttagtctccatgaaagtttgatcaagctccgctcgaatcagcagaaactcg |
214 |
Q |
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| T |
4726217 |
cttttccttcatatggttggaaataacttcccacaactgtttgtttcttttagtctccatgaaagtttgatcaagctccgctcgaatcagcagaaactcg |
4726316 |
T |
|
| Q |
215 |
ttcgtctcttgtatgctccattgaggaaacctatcagaaacatcaacaacgttaattgtgttatttatattatgaagatgaagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4726317 |
ttcgtctcttgtatgctccattgaggaaacctatcagaaacatcaacaacgttaattgtgttatttatattatgaagatgaagatt |
4726402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 25258638 - 25258437
Alignment:
| Q |
48 |
ataccttatagcgagtaacaaggtttttccacttgcacttacactgttctgcacttctatgataacccttttccttcatatggttggaaataacttccca |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
25258638 |
ataccttatagcgagtaacaaggtttttccacttgcacttgcactgttctgcacttctatgataacccttttccttcatagtgttagagataacttccca |
25258539 |
T |
|
| Q |
148 |
caactgtttgtttcttttagtctccatgaaagtttgatcaagctccgctcgaatcagcagaaactcgttcgtctcttgtatgctccattgaggaaaccta |
247 |
Q |
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| ||||||||| || || |||||||||||||||||||| || || | || |||| |||||||| || || ||||| ||||||||||||||||||||| |
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| T |
25258538 |
aagctgtttgttcctctttgtctccatgaaagtttgatctagttctgaacggatcataagaaactcttttgtttcttggatgctccattgaggaaaccta |
25258439 |
T |
|
| Q |
248 |
tc |
249 |
Q |
| |
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|| |
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| T |
25258438 |
tc |
25258437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 10916005 - 10916053
Alignment:
| Q |
48 |
ataccttatagcgagtaacaaggtttttccacttgcacttacactgttc |
96 |
Q |
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|||||||||||||| ||||||| || ||||||||||| ||||||||||| |
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| T |
10916005 |
ataccttatagcgattaacaagattcttccacttgcatttacactgttc |
10916053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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