View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_low_19 (Length: 304)
Name: NF1723_low_19
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 37160442 - 37160728
Alignment:
| Q |
1 |
actgaccaacctcaggtggaactgaagcctggaatcgatctccttggaccagtcgatgagatattctatgacatctatgacagatttgaacccaccaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37160442 |
actgaccaacctcaggtggaactgaagcctggaatcgatctccttggaccagtcgatgagatattctatgacatctatgacagatttgaacctaccaatg |
37160541 |
T |
|
| Q |
101 |
atcatgctactgatggttgtttcatctccacagtaagtattaagaagaatctcttacaacaatgtataatgaaattgtttacctcatttttctctttgac |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37160542 |
atcatgctaccgatggttgtttcatctccacagtaagtattaagaagaatctccgacaacaatgtataatgaaattgtttaccttatttttctctttgac |
37160641 |
T |
|
| Q |
201 |
taacctaaaattaaatccttgtagagctatgatcccacaacacactttgaaaccacagtgaaagatgtggttcagatgtacagtaag |
287 |
Q |
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| T |
37160642 |
taacctaaaattaaatccttgtagagctatgatcccacaacacactttgaaaccacagtgaaagatgtggttcagatgtacagtaag |
37160728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 37501874 - 37501820
Alignment:
| Q |
74 |
tctatgacagatttgaacccaccaatgatcatgctactgatggttgtttcatctc |
128 |
Q |
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||||| ||| ||| ||||||||| || |||||||||||||||||||||||||||| |
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|
| T |
37501874 |
tctatcacatattagaacccacctatcatcatgctactgatggttgtttcatctc |
37501820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 8409464 - 8409518
Alignment:
| Q |
74 |
tctatgacagatttgaacccaccaatgatcatgctactgatggttgtttcatctc |
128 |
Q |
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||||| ||| ||| ||||||||| || |||||||||||||||||||||||||||| |
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| T |
8409464 |
tctatcacatattagaacccacctatcatcatgctactgatggttgtttcatctc |
8409518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 21260957 - 21260889
Alignment:
| Q |
74 |
tctatgacagatttgaacccaccaatgatcatgctactgatggttgtttcatctccacagtaagtatta |
142 |
Q |
| |
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||||| ||| ||| ||||||||| || ||||||||||| |||||||||||||||| ||| ||| ||||| |
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|
| T |
21260957 |
tctatcacatattcgaacccacctatcatcatgctactaatggttgtttcatctctacaataattatta |
21260889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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