View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_low_23 (Length: 284)

Name: NF1723_low_23
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_low_23
NF1723_low_23
[»] chr4 (1 HSPs)
chr4 (74-269)||(2761979-2762173)
[»] chr7 (2 HSPs)
chr7 (11-123)||(48653710-48653823)
chr7 (53-123)||(48576936-48577003)
[»] chr5 (1 HSPs)
chr5 (15-123)||(42861595-42861704)
[»] chr1 (1 HSPs)
chr1 (12-123)||(18472802-18472914)
[»] chr6 (1 HSPs)
chr6 (53-123)||(13773339-13773409)
[»] chr2 (4 HSPs)
chr2 (53-123)||(28267069-28267139)
chr2 (11-123)||(35670665-35670774)
chr2 (53-112)||(41340181-41340240)
chr2 (70-123)||(12774371-12774424)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 269
Target Start/End: Original strand, 2761979 - 2762173
Alignment:
Q  74 ctcttcttattatttcagttccataacattctcacatttattttcatcaacttaattctttctaactgtagtagaaaacattaagctatagtccgtttgc 173  Q
    ||||| |||||||  ||||||||||  || ||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  2761979 ctcttattattataccagttccatataat-ctcacatatatgttcatcaacttaattctttctgactctagtagaaaacattaagctatagtccgtttgc 2762077  T
Q  174 tacaagaacttattagttatacatacccttaaaaattagatttttcattaatctatttaaccgtaaaaagaaaatgaaataaaacttcaagtattt 269  Q
    |||||||||||||||||||||||||  ||  |||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||    
T  2762078 tacaagaacttattagttatacatatactacaaaattagatttttcattcatctatttaaccgtaaagggaaaatgaaataaaacttcaagcattt 2762173  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 48653710 - 48653823
Alignment:
Q  11 cacagaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcaca 109  Q
    |||||||||||| ||||||| |||||||||||||         |||||||||||| ||||||||||||||||||||||||||||| |||||  |||||||    
T  48653710 cacagaaagtaataacacaacatcttatacatgataaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcaca 48653809  T
Q  110 tttattttcatcaa 123  Q
    ||||| ||||||||    
T  48653810 tttatgttcatcaa 48653823  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 48577003 - 48576936
Alignment:
Q  53 tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacatttattttcatcaa 123  Q
    |||||||||||| |||||||||||||   ||||||| ||||| |||||  |||||||||||| ||||||||    
T  48577003 tctttcataaaaggctcatttctctt---attattttagttcgataacgatctcacatttatgttcatcaa 48576936  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 42861704 - 42861595
Alignment:
Q  15 gaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacattta 113  Q
    |||||||| ||||||| ||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||| |||||  |||||||||||    
T  42861704 gaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcacattta 42861605  T
Q  114 ttttcatcaa 123  Q
    | ||||||||    
T  42861604 tgttcatcaa 42861595  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 18472802 - 18472914
Alignment:
Q  12 acagaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacat 110  Q
    ||||||||||| ||||||| ||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||| |||||  ||| ||||    
T  18472802 acagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacat 18472901  T
Q  111 ttattttcatcaa 123  Q
    |||| ||||||||    
T  18472902 ttatgttcatcaa 18472914  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 13773339 - 13773409
Alignment:
Q  53 tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacatttattttcatcaa 123  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||  ||| |||||||| ||||||||    
T  13773339 tctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacatttatattcatcaa 13773409  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 28267069 - 28267139
Alignment:
Q  53 tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacatttattttcatcaa 123  Q
    |||||||||||  ||||||||| ||||||||||||| ||||| |||||  |||||||||||| ||||||||    
T  28267069 tctttcataaagggctcatttcccttcttattattttagttcgataacgatctcacatttatgttcatcaa 28267139  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 35670665 - 35670774
Alignment:
Q  11 cacagaaagtaacaacacaatatcttatacatgacnnnnnnn-tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcaca 109  Q
    |||||||||||| ||||| | ||||||||||||||        |||||||||||| |||||||| ||| |||||||||||||    |||||  |||||||    
T  35670665 cacagaaagtaataacacgacatcttatacatgacaaaagaaatctttcataaaaggctcatttatctgcttattatttcag----ataacgatctcaca 35670760  T
Q  110 tttattttcatcaa 123  Q
    ||||| ||||||||    
T  35670761 tttatgttcatcaa 35670774  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 41340181 - 41340240
Alignment:
Q  53 tctttcataaaatgctcatttctcttcttattatttcagttccataacattctcacattt 112  Q
    |||||||||||| ||| ||||||||| |||||||||| |||| |||||| ||||| ||||    
T  41340181 tctttcataaaaagcttatttctcttattattatttctgttcgataacaatctcaaattt 41340240  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 12774371 - 12774424
Alignment:
Q  70 atttctcttcttattatttcagttccataacattctcacatttattttcatcaa 123  Q
    ||||||||| ||||||||| ||||| |||||  |||||||||||| ||||||||    
T  12774371 atttctcttattattattttagttcgataacgatctcacatttatgttcatcaa 12774424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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