View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_low_27 (Length: 272)
Name: NF1723_low_27
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1723_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 89 - 268
Target Start/End: Complemental strand, 7544867 - 7544688
Alignment:
Q |
89 |
taatcctaagcaatagatatgcatctaattttaaaggatgacttcaagctactcaaaaactttccccgacgcggtaatggccggacaagttcccagcaac |
188 |
Q |
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T |
7544867 |
taatcctaagcaatagatatgcatctaattttaaaggatgacttcaagctactcataaactttccccgacgccgtaatggccggacaagttcccagaaac |
7544768 |
T |
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Q |
189 |
tcttttcaccaccgtcctccgcggtaaacttcggcaccgacatcgtcaccttccgatcttgcctcgtcttcatctcactc |
268 |
Q |
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T |
7544767 |
tcttttcaccaccgtcctccgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttcatatcactc |
7544688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 7554641 - 7554466
Alignment:
Q |
93 |
cctaagcaatagatatgcatctaattttaaaggatgacttcaagctactcaaaaactttccccgacgcggtaatggccggacaagttcccagcaactctt |
192 |
Q |
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T |
7554641 |
cctaagcaatggaaatgcatctaattctaaaggatgacttcaagttacttataaactttccccgacgccgtaatggccggataagttcccagcaactctt |
7554542 |
T |
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Q |
193 |
ttcaccaccgtcctccgcggtaaacttcggcaccgacatcgtcaccttccgatcttgcctcgtcttcatctcactc |
268 |
Q |
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T |
7554541 |
ttcaccaccgtcctctgcggtaaacttcggcaccgtcatcgccaacttccgatcttgcctcgtcttcatatcactc |
7554466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 7544933 - 7544884
Alignment:
Q |
21 |
tactaaccattaagtaaaaataatcattaagggtatcaaaatgaatgaat |
70 |
Q |
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T |
7544933 |
tactaactagtaagtaaaaataatcattaagggtatcaaaatgaatcaat |
7544884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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