View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_low_28 (Length: 257)
Name: NF1723_low_28
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8619293 - 8619053
Alignment:
| Q |
1 |
ttaaacagtgcagaacataaaggctccaacccttgatactcagttatctcagaagaccccggattataatagcagaaattatcaagcttatgtaaatgat |
100 |
Q |
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| T |
8619293 |
ttaaacagtgcagaacttaaaggctccaacccttgatactcagttatctcagaagaccccgaattataatagcagaaattatcaagcttatgtaaatgat |
8619194 |
T |
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| Q |
101 |
ccaacttcaatgtcttcaacgaaacaaactcgataacttcattatctacacttgcataattgtcatttaacaatacaatgccttccagagaaccgcatcc |
200 |
Q |
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| T |
8619193 |
ccaattccaatgtcttcaacgaaacaaactcgataatttcattatctacacttgcataattgtcatttaagaatacaatgccttccagagaaccgcatcc |
8619094 |
T |
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| Q |
201 |
agaaacgcggatcttcacaagttgtgagagctccttgatca |
241 |
Q |
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| T |
8619093 |
agagacatggatcttcacaagttgtgaaagctccttgatca |
8619053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8639757 - 8639997
Alignment:
| Q |
1 |
ttaaacagtgcagaacataaaggctccaacccttgatactcagttatctcagaagaccccggattataatagcagaaattatcaagcttatgtaaatgat |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8639757 |
ttaaacagtgcagaacttaaaggctccaacccttgatactcagttatctcagaagaccccgaattataatagcagaaattatcaagcttatgtaaatgat |
8639856 |
T |
|
| Q |
101 |
ccaacttcaatgtcttcaacgaaacaaactcgataacttcattatctacacttgcataattgtcatttaacaatacaatgccttccagagaaccgcatcc |
200 |
Q |
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| T |
8639857 |
ccaattccaatgtcttcaacgaaacaaactcgataatttcattatctacacttgcataattgtcatttaagaatacaatgccttccagagaaccgcatcc |
8639956 |
T |
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| Q |
201 |
agaaacgcggatcttcacaagttgtgagagctccttgatca |
241 |
Q |
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| T |
8639957 |
agagacatggatcttcacaagttgtgaaagctccttgatca |
8639997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 8628122 - 8628197
Alignment:
| Q |
115 |
ttcaacgaaacaaactcgataacttcattatctacacttgcataattgtcatttaacaatacaatgccttccagag |
190 |
Q |
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|||||||||||||||| | || |||| |||||||||||||||| |||||| ||||||||||||||||||| |||| |
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| T |
8628122 |
ttcaacgaaacaaacttaagaatttcactatctacacttgcatacttgtcagttaacaatacaatgccttcaagag |
8628197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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