View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723_low_3 (Length: 576)
Name: NF1723_low_3
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 138; Significance: 7e-72; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 228 - 417
Target Start/End: Original strand, 7031696 - 7031885
Alignment:
| Q |
228 |
gttccgttatccaataccctaagaatactctttagcatttcccttaatagaaactgaagattaatacagtagtgtcaccatacaagaaggtttaagcacc |
327 |
Q |
| |
|
|||||||||||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
7031696 |
gttccgttatccaatatcctaaagacactctttaacatttctcttaatagaaactgaagattaatatagtggtgtcaccatacaagaaggtttaagcacc |
7031795 |
T |
|
| Q |
328 |
tgattcatatctgattagaagcggagctacttagggacataaggagtcatgacctccccaaaatctcaaaaatttcatttttaataggta |
417 |
Q |
| |
|
| ||||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7031796 |
ttattcatagctgatcagaagcggagctacgtagggacataaggagttatgacctccccaaaatctcaaaaatttcatttttaataggta |
7031885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 7031483 - 7031631
Alignment:
| Q |
16 |
cacatgctttgagaattccttacctatggagtagttgtttttctgatttttatttctcttttc-ttcctgttaccaaacttatatggatactttaattga |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7031483 |
cacatgctttgagaattccttacatatggagtagttgtttttcttatttttatttctcttttccttcctgttaccaaacttatatggatactttaattga |
7031582 |
T |
|
| Q |
115 |
atttatagatatttaataaaagggtcatgctaacattggaaacaacaaa |
163 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7031583 |
gtttatagatattttataaaagggtcatgctaacattggaaacaacaaa |
7031631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 560
Target Start/End: Original strand, 7032079 - 7032118
Alignment:
| Q |
521 |
agcctccacctataactttacatggacgtttagactattg |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7032079 |
agcctccacctataactttacatggacgtttagactattg |
7032118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 26001864 - 26001898
Alignment:
| Q |
383 |
ccccaaaatctcaaaaatttcatttttaataggta |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26001864 |
ccccaaaatctcaaaaatttcatatttaataggta |
26001898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 520
Target Start/End: Original strand, 7032007 - 7032036
Alignment:
| Q |
491 |
taaaggagggcgcatttgagttttggaacc |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7032007 |
taaaggagggcgcatttgagttttggaacc |
7032036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 51766704 - 51766660
Alignment:
| Q |
373 |
gtcatgacctccccaaaatctcaaaaatttcatttttaataggta |
417 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
51766704 |
gtcatggcctccccaaagtctcaaaaatttcatttttaataggta |
51766660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 7076462 - 7076426
Alignment:
| Q |
375 |
catgacctccccaaaatctcaaaaatttcatttttaa |
411 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
7076462 |
catggcctccccaaagtctcaaaaatttcatttttaa |
7076426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 11636 times since January 2019
Visitors: 8091