View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_low_30 (Length: 249)
Name: NF1723_low_30
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1723_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 53425457 - 53425231
Alignment:
Q |
15 |
gaaacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcg |
114 |
Q |
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T |
53425457 |
gaaacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcg |
53425358 |
T |
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Q |
115 |
cggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcga |
214 |
Q |
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T |
53425357 |
cggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcga |
53425258 |
T |
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Q |
215 |
cgatgccatttatgatggagatgatgt |
241 |
Q |
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T |
53425257 |
cgatgccatttatgatggagttgatgt |
53425231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 53309438 - 53309228
Alignment:
Q |
24 |
aacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcaggga |
123 |
Q |
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T |
53309438 |
aacacggtaagggatacatatggacatggtacccatacagcatcgacagcagcagggaatgtcgtgagtggtgcatcatactatggtcttgcagaaggga |
53309339 |
T |
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Q |
124 |
cagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccat |
223 |
Q |
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T |
53309338 |
cagcaaaaggtgggtcctctgagtcgaggttagcgatttacaaagtgtgatttccttcctgttatggctctgggatccttgcagcgttcgacaatgccat |
53309239 |
T |
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Q |
224 |
ttatgatggag |
234 |
Q |
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T |
53309238 |
tttcgatggag |
53309228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 173
Target Start/End: Complemental strand, 53432570 - 53432440
Alignment:
Q |
43 |
atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc |
142 |
Q |
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T |
53432570 |
atggtcatggaacccacacagcatcgaccgcggctgggaatgttgtgagtggtgcatcatactttggtcttgcggcagggacgacaaaaggcgggtcccc |
53432471 |
T |
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Q |
143 |
tgaatcgaggttggcaatttacaaagtgtgc |
173 |
Q |
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T |
53432470 |
tgaatcgaggttggcaatttacaaagtgtgc |
53432440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 48372155 - 48372312
Alignment:
Q |
87 |
gtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgt---gctctcctggct |
183 |
Q |
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T |
48372155 |
gtgagtggtgcatcatactatggtctcgcggaagggatagcaaaaggtggttcccctgaatcgaggttggcgatttacaaagtgtgcagcaatattggtt |
48372254 |
T |
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Q |
184 |
gttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagatgatgt |
241 |
Q |
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T |
48372255 |
gctctggctctgccatacttgcggcgtttgacgatgcaatttctgatggagttgatgt |
48372312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 26097946 - 26097750
Alignment:
Q |
43 |
atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc |
142 |
Q |
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T |
26097946 |
atgggcatggaacccacacagcgtcaaccgcggcggggaacgtcgtgagtggtgcatcatactttggtcttgcagcaggaacggcaaaaggtggatcccc |
26097847 |
T |
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Q |
143 |
tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagatgat |
239 |
Q |
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T |
26097846 |
cggatcaaggttgtcaatttacaaagtgtgcaactttggttgctctggctctgccatccttgcggctttcgacgatgcaatttctgacggagttgat |
26097750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 53321155 - 53321068
Alignment:
Q |
89 |
gagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctct |
176 |
Q |
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T |
53321155 |
gagtggtgcatcatactacggtcttgcaaaagggacatcaaaaggggggtctcctcaatcaaggttggcgatttacaaagtgtgctct |
53321068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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