View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723_low_33 (Length: 240)
Name: NF1723_low_33
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_33 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 430255 - 430423
Alignment:
| Q |
72 |
gattttatagttcaagttcaatggaatttcaatttctcttttatgaaagtaactctgaaggtgcactgtgtaattttatagacccttaaagatcacaaaa |
171 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
430255 |
gattttatagttcaagtacaatggaatttcaatttctcttttatgaaagtaactctgaaggtgcactgtgtaattttatagacccttaaagatcacaaaa |
430354 |
T |
|
| Q |
172 |
aacccttaaaaacaactttttctttcctaatattgattttatatttcatttgcatgtatataattaatt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
430355 |
aacccttaaaaacaactttttctttcctaatattgattttatatttcatttgcatgtatataattaatt |
430423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 430204 - 430236
Alignment:
| Q |
19 |
caagttcaacaaaatcttttattctccggtctc |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
430204 |
caagttcaacaaaatcttttattctccggtctc |
430236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13365 times since January 2019
Visitors: 8302