View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1723_low_34 (Length: 239)

Name: NF1723_low_34
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1723_low_34
NF1723_low_34
[»] chr7 (10 HSPs)
chr7 (134-239)||(48653557-48653662)
chr7 (1-85)||(10288369-10288453)
chr7 (8-85)||(18366915-18366992)
chr7 (8-85)||(15873560-15873637)
chr7 (1-85)||(22078171-22078255)
chr7 (1-67)||(11035961-11036027)
chr7 (11-85)||(48653434-48653508)
chr7 (8-85)||(9993866-9993943)
chr7 (8-85)||(21491081-21491158)
chr7 (173-225)||(22077993-22078045)
[»] chr5 (6 HSPs)
chr5 (134-239)||(42861756-42861861)
chr5 (1-85)||(537364-537448)
chr5 (174-237)||(25101724-25101787)
chr5 (174-237)||(25160817-25160880)
chr5 (31-85)||(42861888-42861942)
chr5 (27-85)||(4557610-4557668)
[»] chr2 (8 HSPs)
chr2 (134-235)||(35670512-35670613)
chr2 (1-85)||(40448025-40448109)
chr2 (1-81)||(41339834-41339909)
chr2 (12-85)||(12774028-12774101)
chr2 (134-239)||(12774152-12774257)
chr2 (11-82)||(35670378-35670449)
chr2 (27-85)||(36731835-36731893)
chr2 (27-83)||(40729032-40729087)
[»] chr6 (9 HSPs)
chr6 (141-239)||(13773150-13773248)
chr6 (8-85)||(32449851-32449928)
chr6 (8-85)||(34636731-34636808)
chr6 (8-81)||(13773017-13773090)
chr6 (8-81)||(24164334-24164407)
chr6 (8-80)||(20558043-20558115)
chr6 (6-85)||(10751148-10751222)
chr6 (173-225)||(32450054-32450106)
chr6 (173-225)||(10751396-10751448)
[»] chr4 (7 HSPs)
chr4 (1-85)||(40459495-40459579)
chr4 (8-85)||(49499598-49499675)
chr4 (7-85)||(2761693-2761771)
chr4 (174-232)||(13652882-13652940)
chr4 (174-232)||(13661007-13661065)
chr4 (27-85)||(55162736-55162793)
chr4 (173-225)||(49499419-49499471)
[»] chr1 (12 HSPs)
chr1 (134-239)||(18472648-18472753)
chr1 (1-85)||(338652-338736)
chr1 (1-85)||(6836442-6836526)
chr1 (1-85)||(43406945-43407029)
chr1 (8-85)||(37666763-37666840)
chr1 (8-85)||(35761638-35761715)
chr1 (173-237)||(25921831-25921895)
chr1 (23-85)||(18472537-18472599)
chr1 (34-79)||(36386378-36386423)
chr1 (134-225)||(16075097-16075188)
chr1 (177-225)||(35761845-35761893)
chr1 (173-225)||(37667014-37667066)
[»] chr3 (8 HSPs)
chr3 (1-85)||(7336272-7336356)
chr3 (6-85)||(16975864-16975943)
chr3 (1-85)||(5004309-5004393)
chr3 (8-85)||(11937474-11937551)
chr3 (6-85)||(46404184-46404263)
chr3 (27-84)||(9104648-9104705)
chr3 (173-225)||(5004556-5004608)
chr3 (173-225)||(16975637-16975689)
[»] scaffold0041 (1 HSPs)
scaffold0041 (6-85)||(32915-32994)
[»] chr8 (4 HSPs)
chr8 (16-85)||(40841119-40841188)
chr8 (174-237)||(3189234-3189300)
chr8 (177-237)||(22635830-22635890)
chr8 (27-85)||(22815930-22815987)
[»] scaffold0413 (2 HSPs)
scaffold0413 (1-58)||(1-58)
scaffold0413 (173-225)||(9186-9238)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 48653557 - 48653662
Alignment:
Q  134 atgcatctgctatacatgatcatgaaactggatcatgattcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 233  Q
    |||||| || ||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653557 atgcatatgttatgcatgatcatgaaaatggatcatgaatcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 48653656  T
Q  234 atgctt 239  Q
    ||||||    
T  48653657 atgctt 48653662  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10288369 - 10288453
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10288369 cacacagatgaataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccg 10288453  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 18366915 - 18366992
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18366915 atgtataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttagattctacatgatccggatataacccg 18366992  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 15873560 - 15873637
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||    
T  15873560 atgtataacagacccaatgcaatgcaatgatatgcaaaatgcatgctcttaaatactacatgatccggatatatcccg 15873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22078255 - 22078171
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||    
T  22078255 cacatagatgtataacagacctaatgcaatgcaatgatgtgtaaaatacatgctcttaaatactatatgatccggatatatcccg 22078171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11035961 - 11036027
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactaca 67  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11035961 cacacagatgtataacagacccaatgcaatgcaatgttgtgtaaaatgcatgctcttagatactaca 11036027  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 48653434 - 48653508
Alignment:
Q  11 tataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  48653434 tatagcagacccaatgcaatgcaattatgtgtaaaatgcaagctcttaaatactacatgatccggatataacccg 48653508  T

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Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 9993943 - 9993866
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  9993943 atgtataacagacccaatgcaatgcaatgccgtgtaaaatgcatgcttttaaatactacatgatccggataaaacccg 9993866  T

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Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 21491081 - 21491158
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  21491081 atgtataacagacccaatgcaatgcaattatgtgtaaattgcatgcttttagattctacatgatccggaaataacccg 21491158  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 22078045 - 22077993
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| ||||||||||||||  ||||   |||||||||||||||||||    
T  22078045 tcccgccactaaggcaccacaaagagatatattattaacccgccactaaggca 22077993  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 134 - 239
Target Start/End: Complemental strand, 42861861 - 42861756
Alignment:
Q  134 atgcatctgctatacatgatcatgaaactggatcatgattcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 233  Q
    |||||| |||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42861861 atgcatatgctatgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 42861762  T
Q  234 atgctt 239  Q
    ||||||    
T  42861761 atgctt 42861756  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 537448 - 537364
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  537448 cacagaaatgtataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttatatactacatgatccggatatatcccg 537364  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 25101724 - 25101787
Alignment:
Q  174 cccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgc 237  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  25101724 cccgccactaaggcaacaccaagaattataagtttaacccgccactaaggtacatcaaaaatgc 25101787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 25160817 - 25160880
Alignment:
Q  174 cccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgc 237  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  25160817 cccgccactaaggcaacaccaagaattataagtttaacccgccactaaggtacatcaaaaatgc 25160880  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 42861942 - 42861888
Alignment:
Q  31 gcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  42861942 gcaattatgtgtaaaatgcatgctcttaaatactacatgatctggatataacccg 42861888  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 4557610 - 4557668
Alignment:
Q  27 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||| ||| |||| |||||||||||||||| ||||||| ||| |||||||||||    
T  4557610 caatgcaattatgcgtaagatgcatgctcttagattctacatggtccagatataacccg 4557668  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 35670512 - 35670613
Alignment:
Q  134 atgcatctgctatacatgatcatgaaactggatcatgattcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 233  Q
    |||||| |||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35670512 atgcatatgctatgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 35670611  T
Q  234 at 235  Q
    ||    
T  35670612 at 35670613  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40448109 - 40448025
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40448109 cacacagatgaataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaggtactacatgatccggatataacccg 40448025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41339834 - 41339909
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataa 81  Q
    |||| ||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41339834 cacacagatgtataacagacccaat-----gcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataa 41339909  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 12774028 - 12774101
Alignment:
Q  12 ataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12774028 ataacagactcaatgcaatgcgattatgtgtaaaatgcatgctcttaaatactacatgatccagatataacccg 12774101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 12774152 - 12774257
Alignment:
Q  134 atgcatctgctatacatgatcatgaaactggatcatgattcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 233  Q
    |||||| ||| || ||||||||||||| || ||||||| |||||||||||||||||||||||||  ||| |  ||| |||||||||||||||||||| ||    
T  12774152 atgcatatgcgatgcatgatcatgaaaatgaatcatgaatcccgccacttaggcaccacaaagagatatgatattatcccgccactaaggcacaccacaa 12774251  T
Q  234 atgctt 239  Q
    ||||||    
T  12774252 atgctt 12774257  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 35670378 - 35670449
Alignment:
Q  11 tataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataac 82  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||    
T  35670378 tatagcagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaatactacatgatccaaatataac 35670449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 36731835 - 36731893
Alignment:
Q  27 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  36731835 caatgcaatgctgtgtaaaatgcatgctcttaaatactacatgatccagatataacccg 36731893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 40729032 - 40729087
Alignment:
Q  27 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacc 83  Q
    ||||||||| ||| |||| ||||||||||||| | |||| |||||||||||||||||    
T  40729032 caatgcaattatgcgtaagatgcatgctcttata-actatatgatccggatataacc 40729087  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 13773150 - 13773248
Alignment:
Q  141 tgctatacatgatcatgaaactggatcatgattcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgctt 239  Q
    |||||| ||||||||||||| |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13773150 tgctatgcatgatcatgaaaatggatcatggatctcgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgctt 13773248  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 32449851 - 32449928
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32449851 atgtataacagactcaatccaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccg 32449928  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 34636808 - 34636731
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  34636808 atgtataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccg 34636731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 13773017 - 13773090
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataa 81  Q
    ||||||| |||| |||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  13773017 atgtatagcagatccaatgtaatgcaattatgtgtaaaatgcatgctcttaaatactacatgatccggatataa 13773090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 24164407 - 24164334
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataa 81  Q
    |||||||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||    
T  24164407 atgtataacagaccaaatgcaatgcaattatgtgtaaaatacatgctcttaaatactacatgatccagatataa 24164334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 20558115 - 20558043
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatata 80  Q
    ||||| ||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||    
T  20558115 atgtacaacagacccaatgcaatgcaatgatgtataaaacacatgctcttaaatactacatgatccggatata 20558043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 10751148 - 10751222
Alignment:
Q  6 agatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||||||||||     ||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  10751148 agatgtataacagacccaat-----gcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatatatcccg 10751222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 32450054 - 32450106
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| ||||||||||||||| ||||   |||||||||||||||||||    
T  32450054 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 32450106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 10751396 - 10751448
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| ||||||||||||||| ||||   |||||| ||||||||||||    
T  10751396 tcccgccactaaggcaccacaaagaaatatattattaaccagccactaaggca 10751448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40459579 - 40459495
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40459579 cacacagatgaataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 40459495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 49499675 - 49499598
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| ||||||||||||    
T  49499675 atgtataacagacccaatgcaatgcaattatgtgtaaaatgcatgctcttaaattctacatgatctggatataacccg 49499598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 2761693 - 2761771
Alignment:
Q  7 gatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  2761693 gatgtataacagacacaatgcaatgcaatcatgtgtaaaatgcatgctcttaaatactaaatgattcggatataacccg 2761771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 13652940 - 13652882
Alignment:
Q  174 cccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaa 232  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  13652940 cccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcacaccaaa 13652882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 13661065 - 13661007
Alignment:
Q  174 cccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaa 232  Q
    ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  13661065 cccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcacaccaaa 13661007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 55162793 - 55162736
Alignment:
Q  27 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||| |||  ||| ||||||||||||| | ||||||||||||||||||||||||    
T  55162793 caatgcaattatgcataagatgcatgctcttata-actacatgatccggatataacccg 55162736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 49499471 - 49499419
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| |||||||||| |||| ||||   |||||||||||||||||||    
T  49499471 tcccgccactaaggcaccacacagaaatatattattaacccgccactaaggca 49499419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 18472648 - 18472753
Alignment:
Q  134 atgcatctgctatacatgatcatgaaactggatcatgattcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaa 233  Q
    |||||| |||||| ||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  18472648 atgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttagacaccacagagaattataagtttaacccgccactaaggcacacaaaaa 18472747  T
Q  234 atgctt 239  Q
    ||||||    
T  18472748 atgctt 18472753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 338736 - 338652
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  338736 cacacagatgaataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaggtactacatgatccggatataacccg 338652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 6836526 - 6836442
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6836526 cacacagatgtataacagactcaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccg 6836442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 43406945 - 43407029
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43406945 cacacagatgaataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccg 43407029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 37666763 - 37666840
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37666763 atgtataacagacccaatgcagtgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatatatcccg 37666840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 35761638 - 35761715
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  35761638 atgtatagcagacccaatgcaatgcaatgatgtgtaaaatgtatgctcttagatactacatgatccggatatatcccg 35761715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 25921895 - 25921831
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgc 237  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25921895 tcccgtcacttaggcaccacaaagaattataagtttaacccaccactaaggcacaccaaaaatgc 25921831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 18472537 - 18472599
Alignment:
Q  23 aatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  18472537 aatgcaatgcaattatgtgtaaaatgtatgctcttaaatactacatgatccggatataacccg 18472599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 36386378 - 36386423
Alignment:
Q  34 atgatgtgtaaaatgcatgctcttagatactacatgatccggatat 79  Q
    ||||| ||||||||||||||||||| ||||||||||||| ||||||    
T  36386378 atgatctgtaaaatgcatgctcttaaatactacatgatctggatat 36386423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 16075188 - 16075097
Alignment:
Q  134 atgcatctgctatacatgatcatgaaactggatcatgattcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||| ||| || ||||||||||||| || ||| | | |||||||||| ||||||||||||| | ||| |  ||||||||||| |||||||    
T  16075188 atgcatttgccatgcatgatcatgaaaatgcatcctaaatcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggca 16075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 35761845 - 35761893
Alignment:
Q  177 gccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||| ||||||||||||||| ||||   |||||||||||||||||||    
T  35761845 gccactaaggcaccacaaagaaatatattattaacccgccactaaggca 35761893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 37667014 - 37667066
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| ||||||||||||||| ||||   |||||||| ||||||||||    
T  37667014 tcccgccactaaggcaccacaaagaaatatattattaacccgtcactaaggca 37667066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7336272 - 7336356
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  7336272 cacacagatgtataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttagatactacatgatccggatatatcccg 7336356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 16975943 - 16975864
Alignment:
Q  6 agatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  16975943 agatgtataatagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatagtacatgatccggatataacccg 16975864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5004309 - 5004393
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||| |||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  5004309 cacacagatgtattatagacccaatgcaatgcaatgatgtgcaaaatgcatgctcttaaatactacatgatccggatataacccg 5004393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 11937474 - 11937551
Alignment:
Q  8 atgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||    
T  11937474 atgtataacagacccaatgcaatgcaattatgtgtaaaatgcatgttcttatattctacatgatccggatataacccg 11937551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 46404184 - 46404263
Alignment:
Q  6 agatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| ||||    
T  46404184 agatgtataacagacccaatgcaatgcaatgatatgcaaaacgcatgctcttaaatactacatgatccggatatatcccg 46404263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 9104705 - 9104648
Alignment:
Q  27 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataaccc 84  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9104705 caatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataaccc 9104648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 5004556 - 5004608
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| ||||||||||||||| ||||   |||||||||||||||||||    
T  5004556 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 5004608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 16975689 - 16975637
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| ||||||||||||||| ||||   |||||||||||||||||||    
T  16975689 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 16975637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 32915 - 32994
Alignment:
Q  6 agatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32915 agatgtataacagactcaatgcaatgcaatgatgtgtaaaatgcatgctcttaaatactacatgatccggatataacccg 32994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 40841119 - 40841188
Alignment:
Q  16 cagacccaatgcaatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  40841119 cagacccaatgcaatgcgattatgtgtaaaatgtatgctcttaaatactacatgatccggatataacccg 40841188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 3189234 - 3189300
Alignment:
Q  174 cccgccacttaggcaccacaaagaattataagttta---acccgccactaaggcacaccaaaaatgc 237  Q
    ||||||||| ||||||||| ||||||||||||||||   ||||||||||||||||||||||||||||    
T  3189234 cccgccactaaggcaccaccaagaattataagtttaattacccgccactaaggcacaccaaaaatgc 3189300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 22635830 - 22635890
Alignment:
Q  177 gccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgc 237  Q
    |||||| ||||||||| || ||||||||||||||||||||| ||| |||| ||||||||||    
T  22635830 gccactaaggcaccaccaataattataagtttaacccgccattaaagcactccaaaaatgc 22635890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 22815930 - 22815987
Alignment:
Q  27 caatgcaatgatgtgtaaaatgcatgctcttagatactacatgatccggatataacccg 85  Q
    ||||||||| |||||||| ||||||||||||| | |||| ||||||| |||||||||||    
T  22815930 caatgcaattatgtgtaagatgcatgctcttata-actatatgatccagatataacccg 22815987  T

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Target: scaffold0413 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 58 - 1
Alignment:
Q  1 cacagagatgtataacagacccaatgcaatgcaatgatgtgtaaaatgcatgctctta 58  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  58 cacacagatgtataacagacccaatgcaatgcaatgatgtgcaaaatgcatgctctta 1  T

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Target: scaffold0413; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 9238 - 9186
Alignment:
Q  173 tcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggca 225  Q
    |||||||||| ||||||||||||||| ||||   |||||||||||||||||||    
T  9238 tcccgccactaaggcaccacaaagaaatatattattaacccgccactaaggca 9186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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