View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1723_low_42 (Length: 205)
Name: NF1723_low_42
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 52066937 - 52066984
Alignment:
| Q |
23 |
ataaagcaccgacacagacatcagacacaacactcacacgtcgacacc |
70 |
Q |
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| T |
52066937 |
ataaagcaccgacacagaaatcagacacaacactcacacgtcgacacc |
52066984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 52067056 - 52067113
Alignment:
| Q |
142 |
atgaagcactgacagacactagacacaacactgacacgtcgacaccaagaataattta |
199 |
Q |
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| T |
52067056 |
atgaagcactgacagacaccggacacaacactgacacgtcgataccaataataattta |
52067113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 52066959 - 52066996
Alignment:
| Q |
162 |
agacacaacactgacacgtcgacaccaagaataattta |
199 |
Q |
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| T |
52066959 |
agacacaacactcacacgtcgacaccaataataattta |
52066996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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