View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1723_low_5 (Length: 426)
Name: NF1723_low_5
Description: NF1723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1723_low_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 87 - 408
Target Start/End: Original strand, 41485214 - 41485535
Alignment:
| Q |
87 |
tttatcaacgtatcatcttatgatgtgaataacttggttgcttgtctaaactatctattagctattcagttgtttgtgtccaaagatgatgattttaatt |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41485214 |
tttatcaacgtatcatcttatgatgtgaataacttggttgcttgtctaaactgtctattagctatccagttgtttgtgtccaaagatgatgattttaatt |
41485313 |
T |
|
| Q |
187 |
cataaagttttacattttaggagaaaattggtaggatcaggtcaggtctatgaaaagaccagattttctttttacattcagttaatttgtcatattgttt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485314 |
cataaagttttacattttaggagaaaattggtaggatcgggtcaggtctatgaaaagagcagattttctttttacattcagttaatttgtcatattgttt |
41485413 |
T |
|
| Q |
287 |
catactgattcaatcataaggtatctgatgcctaaacttgaagcaaaataagttcaagtagtttgttcctgttgctttgttgccatgatttcattgtttg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485414 |
catactgattcaatcataaggtatctgatgcctaaacttgaagcaaaataagttcaagtagtttgttcctgttgctttgttgccatgatttcattgtttg |
41485513 |
T |
|
| Q |
387 |
ttttgtccaattaattactttt |
408 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
41485514 |
ttttgtccaattaattactttt |
41485535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 86 - 393
Target Start/End: Original strand, 40752336 - 40752643
Alignment:
| Q |
86 |
atttatcaacgtatcatcttatgatgtgaataacttggttgcttgtctaaactatctattagctattcagttgtttgtgtccaaagatgatgattttaat |
185 |
Q |
| |
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|||| |||||| |||||| | | |||||||| || ||||||||||| | |||| |||||||||||| ||||||||||||||||||| |||||||| |||| |
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| T |
40752336 |
atttctcaacgcatcatcctttcatgtgaatcacgtggttgcttgtttcaactgtctattagctatccagttgtttgtgtccaaagttgatgattgtaat |
40752435 |
T |
|
| Q |
186 |
tcataaagttttacattttaggagaaaattggtaggatcaggtcaggtctatgaaaagaccagattttctttttacattc--agttaatttgtcatattg |
283 |
Q |
| |
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|||| ||||||||||||||| |||||||||||| || ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| |
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| T |
40752436 |
acata--gttttacattttaggtgaaaattggtagagtcgggtcaggtctatgaaaagagcatattttctttttacatttttagttaatttgtcatattg |
40752533 |
T |
|
| Q |
284 |
tttcatactgattcaatcataaggtatctgatgcctaaacttgaagcaaaataagttcaagtagtttgttcctgttgctttgttgccatgatttcattgt |
383 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |
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| T |
40752534 |
tttcatactggtttaatcataaggtatctgatgcctaaacttcaagcaaaataagttcaggtagtttgttgctgttgctttgttgccatgatttcattat |
40752633 |
T |
|
| Q |
384 |
ttgttttgtc |
393 |
Q |
| |
|
|||||||||| |
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|
| T |
40752634 |
ttgttttgtc |
40752643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 86 - 392
Target Start/End: Original strand, 41471120 - 41471424
Alignment:
| Q |
86 |
atttatcaacgtatcatcttatgatgtgaataacttggttgcttgtctaaactatctattagctattcagttgtttgtgtccaaagatgatgattttaat |
185 |
Q |
| |
|
|||| ||||| ||||||| ||| |||||||| | ||||||||||| | |||| ||| || ||||| | ||||| ||||||||||| ||||||||||||| |
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|
| T |
41471120 |
atttttcaacctatcatcctattatgtgaatcatgtggttgcttgtttcaactgtctgtttgctatcccgttgtctgtgtccaaaggtgatgattttaat |
41471219 |
T |
|
| Q |
186 |
tcataaagttttacattttaggagaaaa-ttggtaggatcaggtcaggtctatgaaaagaccagattttctttttacat--tcagttaatttgtcatatt |
282 |
Q |
| |
|
|||||| |||| ||||||||| ||||| ||||||| | ||||||||||||||| | ||||||||||||||||| | | ||||||||||||||| |
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| T |
41471220 |
tcataatgtttaacattttagttgaaaatttggtagaa-----tcaggtctatgaaaacaaaagattttctttttacattattaattaatttgtcatatt |
41471314 |
T |
|
| Q |
283 |
gtttcatactgattcaatcataaggtatctgatgcctaaacttgaagcaaaataagttcaagtagtttgttcctgttgctttgttgccatgatttcattg |
382 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||| |||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
41471315 |
gtttcatactggttcaatcatggtgtatttgatgcccaaacttcaagcaaaataagttcaggtagtttgttgctgttgctttgtggccatgatttcattg |
41471414 |
T |
|
| Q |
383 |
tttgttttgt |
392 |
Q |
| |
|
|||| ||||| |
|
|
| T |
41471415 |
tttggtttgt |
41471424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 86 - 392
Target Start/End: Original strand, 41478008 - 41478312
Alignment:
| Q |
86 |
atttatcaacgtatcatcttatgatgtgaataacttggttgcttgtctaaactatctattagctattcagttgtttgtgtccaaagatgatgattttaat |
185 |
Q |
| |
|
|||| ||||| ||||||| ||| |||||||| | ||||||||||| | |||| ||| || ||||| | ||||| ||||||||||| ||||||||||||| |
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| T |
41478008 |
atttttcaacctatcatcctattatgtgaatcatgtggttgcttgtttcaactgtctgtttgctatcccgttgtctgtgtccaaaggtgatgattttaat |
41478107 |
T |
|
| Q |
186 |
tcataaagttttacattttaggagaaaa-ttggtaggatcaggtcaggtctatgaaaagaccagattttctttttacat--tcagttaatttgtcatatt |
282 |
Q |
| |
|
|||||| |||| ||||||||| ||||| ||||||| | ||||||||||||||| | ||||||||||||||||| | | ||||||||||||||| |
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|
| T |
41478108 |
tcataatgtttaacattttagttgaaaatttggtagaa-----tcaggtctatgaaaacaaaagattttctttttacattattaattaatttgtcatatt |
41478202 |
T |
|
| Q |
283 |
gtttcatactgattcaatcataaggtatctgatgcctaaacttgaagcaaaataagttcaagtagtttgttcctgttgctttgttgccatgatttcattg |
382 |
Q |
| |
|
||||||||||| ||||||||| |||| ||||||| |||||| |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |
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| T |
41478203 |
gtttcatactggttcaatcatggtgtatttgatgcccaaacttcaagcaaaataagttcaggtagtttgttgctgttgctttgtggccatgatttcattg |
41478302 |
T |
|
| Q |
383 |
tttgttttgt |
392 |
Q |
| |
|
|||| ||||| |
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|
| T |
41478303 |
tttggtttgt |
41478312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 41485064 - 41485153
Alignment:
| Q |
1 |
agaaaagtgtcctgtttgcaaacattcaaatcatgtagttgaaatcttatttaagttgcttggaagacgtgtcttgttcacatgtattta |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41485064 |
agaaaagtgtcctgtttgcaaacattcaaatcatgtagttgaaatcttatttaagttgcttggaagacgtgtcttgttcacatgtattta |
41485153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 40752199 - 40752275
Alignment:
| Q |
15 |
tttgcaaacattcaaatcatgtagttgaaatcttatttaagttgcttggaagac-gtgtcttgttcacatgtattta |
90 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
40752199 |
tttgcaaacattcaaatcatgttgttggaatcttatgtaagttgcttggaagacagtgtcttgttcacatgtattta |
40752275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 40748822 - 40748892
Alignment:
| Q |
157 |
tgtttgtgtccaaagatgatgattttaattcataaagttttacattttaggagaaaattggtaggatcagg |
227 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||| |||||| |
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|
| T |
40748822 |
tgtttgtgtccaaagattatgattttaattcataatgttttacattttatgtcaaaattggtagaatcagg |
40748892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 147 - 299
Target Start/End: Original strand, 40749453 - 40749607
Alignment:
| Q |
147 |
gctattcagttgtttgtgtccaaagatgatgattttaattcataaagttttacattttaggagaaaattggtaggatcaggtcaggtctatgaaaagacc |
246 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||| ||||| ||| ||||||||| | |||| | ||| |||||| ||||||| ||||||| |
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|
| T |
40749453 |
gctatccagttgtttgtgtccaaagacgatcattttaatgcataatatttcgcattttaggtgcaaatcgatagaatcaggcgaggtctacgaaaagaat |
40749552 |
T |
|
| Q |
247 |
agattttctttttaca--ttcagttaatttgtcatattgtttcatactgattcaa |
299 |
Q |
| |
|
| |||||||| ||||| || |||||||| ||||||||||||| |||| ||||| |
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|
| T |
40749553 |
atattttcttcttacattttttgttaatttttcatattgtttcacactggttcaa |
40749607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 209 - 392
Target Start/End: Complemental strand, 16412770 - 16412596
Alignment:
| Q |
209 |
gaaaattggtaggatcaggtcaggtctatgaaaagaccagattttctttttacattc--agttaatttgtcatattgtttcatactgattcaatcataag |
306 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||| | || ||||||||||||||| ||||||||||||||| ||| |||||||||| | |
|
|
| T |
16412770 |
gaaatttggtagaatcaggttaggtctatgaaaacaaaagcttttctttttacattattagttaatttgtcata----------ctggttcaatcatagg |
16412681 |
T |
|
| Q |
307 |
gtatctgatgcctaaacttgaagcaaaataagttcaagtagtttgttcctgttgctttgttgccatgatttcattgtttgttttgt |
392 |
Q |
| |
|
|| | ||||||| |||||| ||||||||||||||| |||||||||| ||||||||||| | ||||||||| |||||||| ||||| |
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|
| T |
16412680 |
gttt-tgatgcccaaacttcaagcaaaataagttctggtagtttgttactgttgctttgcttccatgatttaattgtttggtttgt |
16412596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 16412969 - 16412884
Alignment:
| Q |
3 |
aaaagtgtcctgttt-gcaaacattcaaatcatgtagttgaaatcttatttaagttgcttggaagac-gtgtcttgttcacatgtattta |
90 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
16412969 |
aaaagtgtcatgttttgcaaacattcaaatcat---gttgaaatcatatttaagttgctt-gaagacagtgtcttgttcacgtgtattta |
16412884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 290
Target Start/End: Complemental strand, 16410564 - 16410466
Alignment:
| Q |
193 |
gttttacattttaggagaaaattggtaggatcaggtcaggtctatgaaaagaccagattttctttttacattca--gttaatttgtcatattgtttcata |
290 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||| || |||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||| |
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|
| T |
16410564 |
gtttcacattttaggtaaaaattggtataatcaggccatgtctatgaaaaggacagattttctttt-acattttttgttaatttctcatattgtttcata |
16410466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 16408000 - 16407942
Alignment:
| Q |
345 |
tagtttgttcctgttgctttgttgccatgatttcattgtttgttttgtccaattaatta |
403 |
Q |
| |
|
||||||||| |||| ||||| |||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
16408000 |
tagtttgttgatgttactttgctgccttgatttcattgtttgttttgttcaagtaatta |
16407942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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