View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1735-Insertion-1 (Length: 355)
Name: NF1735-Insertion-1
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 6 - 355
Target Start/End: Complemental strand, 39601426 - 39601077
Alignment:
| Q |
6 |
cactaacatgcttcttatcctttatcaaataatctttccccatattgttaacaatataatcagtaaatggaaggtgacttatatcagcaaggctgaaaaa |
105 |
Q |
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| T |
39601426 |
cactaacatgcttcttatcctttatcaaataatctttccccatattgttaacaacgtaatccataaatggaaggtgacttatatcagcaaggctgaaaaa |
39601327 |
T |
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| Q |
106 |
atcaccagctaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgcttcactctcttcaattacctttggatctgga |
205 |
Q |
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| T |
39601326 |
atcaccagccaaatacttgttctttgatagcctctcttcataaatgttgaacaccttcaccaactttgcttcactttcttcaattacctttggatctgga |
39601227 |
T |
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| Q |
206 |
gtgccgtcaactagtagtgaaggaaacaaaacatgacaggtcaaattgtatgctgatgggtggaaattatgtgcttcaacttctaaccattgttccacaa |
305 |
Q |
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| T |
39601226 |
gagctgccacctagtagtgtaggacacaaaacatgacaggtcaaattgtatgctgatgggtggaaattatgtgcttcaacttctaaccattgttccacaa |
39601127 |
T |
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| Q |
306 |
ggcccttttcttctattgtctttcctagtaactcaaccccttgagatcta |
355 |
Q |
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| T |
39601126 |
gacccttttcttctattgtctttcctagtaactcaaccccttgagatcta |
39601077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 355
Target Start/End: Complemental strand, 39612247 - 39611898
Alignment:
| Q |
6 |
cactaacatgcttcttatcctttatcaaataatctttccccatattgttaacaatataatcagtaaatggaaggtgacttatatcagcaaggctgaaaaa |
105 |
Q |
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| T |
39612247 |
cactaacatttttcctctccttaatcaaataatctttccccatattgttaacaatataatcagtaaatggaaggtgacttatatcagcaaggctgaaaaa |
39612148 |
T |
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| Q |
106 |
atcaccagctaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgcttcactctcttcaattacctttggatctgga |
205 |
Q |
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| T |
39612147 |
atcaccagccaaatacttgttctttgatagtctctcttcataaatgttcaacaccttcaccaactttgcttcactctcttcaattacctttggatctgga |
39612048 |
T |
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| Q |
206 |
gtgccgtcaactagtagtgaaggaaacaaaacatgacaggtcaaattgtatgctgatgggtggaaattatgtgcttcaacttctaaccattgttccacaa |
305 |
Q |
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||||||||||| |||||||||||||||||||||||| | ||| ||||| |||| ||||| || || ||||||||||||||||||||||||||||||| |
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| T |
39612047 |
gtgccgtcaaccagtagtgaaggaaacaaaacatgaatgaccaagttgtaagctggtgggttaaagttgtgtgcttcaacttctaaccattgttccacaa |
39611948 |
T |
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| Q |
306 |
ggcccttttcttctattgtctttcctagtaactcaaccccttgagatcta |
355 |
Q |
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| T |
39611947 |
gacccttttcttctattgtctttcctagcaactcaaccccttgagatcta |
39611898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 34774526 - 34774409
Alignment:
| Q |
6 |
cactaacatgcttcttatcctttatcaaataatctttccccatattgttaacaatataatcagtaaatggaaggtgacttatatcagcaaggctgaaaaa |
105 |
Q |
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|||||||||||||| |||||||||||||| |||| |||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
34774526 |
cactaacatgcttcctatcctttatcaaacaatccttcctcatattgttaacaacgtaatccataaatggaaggtgactcatatcagcaaggctgaaaaa |
34774427 |
T |
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| Q |
106 |
atcaccagctaaatactt |
123 |
Q |
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| T |
34774426 |
atcaccagccaaatactt |
34774409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 160 - 283
Target Start/End: Complemental strand, 34774411 - 34774287
Alignment:
| Q |
160 |
cttcaccaactttgcttcactctcttcaattacctttggatctggagtgccgtcaactagtagtgaaggaaacaaaacatgacaggtc-aaattgtatgc |
258 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||| ||||| || |||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
34774411 |
cttcaccaactttgcttcactctcttcaattaccttaggctctggattgccgccagctagtagtgaaggacgcaaaacatgataggtcaaaattgtatgc |
34774312 |
T |
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| Q |
259 |
tgatgggtggaaattatgtgcttca |
283 |
Q |
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| T |
34774311 |
tggtgggtggaagatatgtgcttca |
34774287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 17647192 - 17647124
Alignment:
| Q |
262 |
tgggtggaaattatgtgcttcaacttctaaccattgttccacaaggcccttttcttctattgtctttcc |
330 |
Q |
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| T |
17647192 |
tgggttgaagttatgtgcttcaacttctagccattgctccacaagacccctttcttctattgtctttcc |
17647124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 17647362 - 17647266
Alignment:
| Q |
89 |
tcagcaaggctgaaaaaatcaccagctaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgcttcactctctt |
185 |
Q |
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||||||||||| || ||||||||||| || ||||| ||||||| ||||||||||||||||| | ||||||||| | | |||| |||||||||||| |
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| T |
17647362 |
tcagcaaggctaaagaaatcaccagccaagtacttagtctttgatagcctctcttcataaatatccaacacctttccaagcttttcttcactctctt |
17647266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 17572784 - 17572885
Alignment:
| Q |
88 |
atcagcaaggctgaaaaaatcaccagctaaatacttgctctttgaaagcctctcttcataaatgttcaacaccttcaccaactttgcttcactctcttca |
187 |
Q |
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||||||||| || || ||||||||||| || |||||| ||||||| |||||||| |||||||| | |||||| ||| || |||| | |||||||||||| |
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| T |
17572784 |
atcagcaagactaaagaaatcaccagccaagtacttggtctttgagagcctctcctcataaatatccaacactttcttcagcttttcatcactctcttca |
17572883 |
T |
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| Q |
188 |
at |
189 |
Q |
| |
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|| |
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| T |
17572884 |
at |
17572885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 17572955 - 17573025
Alignment:
| Q |
262 |
tgggtggaaattatgtgcttcaacttctaaccattgttccacaaggcccttttcttctattgtctttccta |
332 |
Q |
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| T |
17572955 |
tgggtgaaagttatgtgcttccacttcaagccattgttccacaagacccctttcttctaccgtctttccta |
17573025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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