View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1735-Insertion-2 (Length: 609)

Name: NF1735-Insertion-2
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1735-Insertion-2
NF1735-Insertion-2
[»] chr4 (6 HSPs)
chr4 (8-156)||(40062475-40062623)
chr4 (225-409)||(40062260-40062461)
chr4 (449-533)||(40062136-40062220)
chr4 (368-402)||(40062202-40062236)
chr4 (552-589)||(40062075-40062112)
chr4 (292-360)||(50247944-50248012)
[»] chr8 (3 HSPs)
chr8 (287-371)||(44042552-44042637)
chr8 (284-358)||(4166524-4166598)
chr8 (285-325)||(11872887-11872927)
[»] chr1 (6 HSPs)
chr1 (284-360)||(46895959-46896035)
chr1 (286-335)||(38294061-38294110)
chr1 (284-327)||(19547052-19547095)
chr1 (284-366)||(26765974-26766057)
chr1 (284-314)||(26297779-26297809)
chr1 (285-327)||(34582714-34582756)
[»] scaffold0172 (1 HSPs)
scaffold0172 (284-371)||(13480-13568)
[»] chr3 (2 HSPs)
chr3 (284-324)||(25845942-25845982)
chr3 (284-340)||(49682214-49682270)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 5e-76; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 40062623 - 40062475
Alignment:
Q  8 gtattgaaggagtttgcttcaaagaaatgtggtaaacttgggaaattgttgaaggagagtggtaatcatgggattcagatgaagcatagagatttcagag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40062623 gtattgaaggagtttgcttcaaagaaatgtggtaaacttgggaaattgttgaaggagagtggtaatcgtgggattcagatgaagcatagagatttcagag 40062524  T
Q  108 ctccgaatcctagtccagttaaggtaattaagtttcatgttaatgttaa 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40062523 ctccgaatcctagtccagttaaggtaattaagtttcatgttaatgttaa 40062475  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 225 - 409
Target Start/End: Complemental strand, 40062461 - 40062260
Alignment:
Q  225 aattgacgttgctagcatgaataattatatagagaacattatttaaaaggttttgtta-----------------cgactttagatagtaagtttttata 307  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||                 ||| |||| ||| ||| ||||||||    
T  40062461 aattgacgttgctagcatgagtaattatatagagaacattatttaaagagttttgttaacgagtgcactcttgaacgattttaaataataaatttttata 40062362  T
Q  308 gaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaataatagtttcttaacaagttttagaggtaataaaagtacctataaaaaca 407  Q
    |||| |  | |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40062361 gaaattcgtgcattcaatgcattggaaaatgaaatattgaactttttcaataatagtttcttaacaagttttagaggtaataaaagtacctataaaaaca 40062262  T
Q  408 ag 409  Q
    ||    
T  40062261 ag 40062260  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 40062220 - 40062136
Alignment:
Q  449 gtaataaaagtatctataataaatttataattccatatttaattaggacggatactcttgagtcttgagtgtacatgcaatgcca 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40062220 gtaataaaagtatctataataaatttataattccatatttaattaggacggatactcttgagtcttgagtgtacatgcaatgcca 40062136  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 402
Target Start/End: Complemental strand, 40062236 - 40062202
Alignment:
Q  368 ttaacaagttttagaggtaataaaagtacctataa 402  Q
    |||||||||||||||||||||||||||| ||||||    
T  40062236 ttaacaagttttagaggtaataaaagtatctataa 40062202  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 589
Target Start/End: Complemental strand, 40062112 - 40062075
Alignment:
Q  552 tgtgatgacggttaatttgtgtattaatataagttttt 589  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  40062112 tgtgatgactgttagtttgtgtattaatataagttttt 40062075  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 50248012 - 50247944
Alignment:
Q  292 atagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaataa 360  Q
    |||||||||||||||||||| | ||  ||||||||| ||| ||| | ||||||  ||||||||||||||    
T  50248012 atagtaagtttttatagaaattaatgaattcaatgcattgaaaatttaactatttaactttttcaataa 50247944  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 287 - 371
Target Start/End: Complemental strand, 44042637 - 44042552
Alignment:
Q  287 tttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaat-aatagtttcttaa 371  Q
    |||| |||||||||||||||||||| || | |||||||||| ||||||| |||| ||| ||||||||||||| |||||||||||||    
T  44042637 tttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattgaactttttcaatgaatagtttcttaa 44042552  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 4166598 - 4166524
Alignment:
Q  284 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaat 358  Q
    |||||||||||  |||||||||| ||||||| | |||||||||  ||||||| |||| ||| |||||||||||||    
T  4166598 gactttagatataaagtttttatggaaacttgtgcattcaatgtattggaaattgaaatattgaactttttcaat 4166524  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 11872927 - 11872887
Alignment:
Q  285 actttagatagtaagtttttatagaaacttatccattcaat 325  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  11872927 actttagatagtaagtttttataaaaacttatacattcaat 11872887  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 46896035 - 46895959
Alignment:
Q  284 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaataa 360  Q
    |||||||||||||||||||||||||||| |||| |||||||||| | ||||| |||| |||   |||||||||||||    
T  46896035 gactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataa 46895959  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 38294110 - 38294061
Alignment:
Q  286 ctttagatagtaagtttttatagaaacttatccattcaatgctttggaaa 335  Q
    ||||| ||||||||||||||||||||||| | |||||||||| |||||||    
T  38294110 ctttaaatagtaagtttttatagaaacttgtgcattcaatgcattggaaa 38294061  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 19547052 - 19547095
Alignment:
Q  284 gactttagatagtaagtttttatagaaacttatccattcaatgc 327  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||    
T  19547052 gactttatatagtaagtttttatagaaacttgtgcattcaatgc 19547095  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 26766057 - 26765974
Alignment:
Q  284 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaat-aatagttt 366  Q
    ||||||||||||||||||| |||| |||||||| |||||||| | |  |||| |||| |||  |||||||||||| ||||||||    
T  26766057 gactttagatagtaagtttatataaaaacttatgcattcaatccatcagaaattgaaatattaaactttttcaatgaatagttt 26765974  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 314
Target Start/End: Complemental strand, 26297809 - 26297779
Alignment:
Q  284 gactttagatagtaagtttttatagaaactt 314  Q
    |||||||||||||||||||||||||||||||    
T  26297809 gactttagatagtaagtttttatagaaactt 26297779  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 34582756 - 34582714
Alignment:
Q  285 actttagatagtaagtttttatagaaacttatccattcaatgc 327  Q
    ||||||||||||||||||||||  |||||||| ||||||||||    
T  34582756 actttagatagtaagtttttatgaaaacttatgcattcaatgc 34582714  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 13568 - 13480
Alignment:
Q  284 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaactatcgaactttttcaat-aatagtttcttaa 371  Q
    ||||| |||||||| |||||||| ||||||| | ||||||| || | ||||| |||| |||   ||||||||||| |||||||||||||    
T  13568 gacttgagatagtaggtttttatggaaacttgtgcattcaaagcatcggaaattgaagtattagactttttcaatgaatagtttcttaa 13480  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 25845982 - 25845942
Alignment:
Q  284 gactttagatagtaagtttttatagaaacttatccattcaa 324  Q
    |||||||||||||||||||||||| |||||| | |||||||    
T  25845982 gactttagatagtaagtttttatataaacttgtgcattcaa 25845942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 49682270 - 49682214
Alignment:
Q  284 gactttagatagtaagtttttatagaaacttatccattcaatgctttggaaaatgaa 340  Q
    ||||||| ||||||| |||||||||||| || | |||||||||||| ||||| ||||    
T  49682270 gactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaa 49682214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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