View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1735-Insertion-4 (Length: 309)
Name: NF1735-Insertion-4
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 10127342 - 10127643
Alignment:
| Q |
8 |
acaacatcctcagggacaatgacatgtttggctttcttaattgtgtttgtgtattataattgtcataacacaaataaagctataaaatataacctattgg |
107 |
Q |
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| T |
10127342 |
acaacatcctcagggacaatgacatgtttggctttcttaattgtgtttatgtattataattgtcataacacaaataaagttataaaatataatctattgg |
10127441 |
T |
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| Q |
108 |
tttctattgtctgaagtcaatggcatgttaagcaaatgaaaagagattgatttgtgttttggagaaatgtggaggtgttgttgctattttggtgaaagcc |
207 |
Q |
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| T |
10127442 |
tttctattgtctgaagtcaatggcatgttaagcaaatgaaaagaggttgatttgtgttttggagaaatgtggaggtgttgttgctattttggtgaaagcc |
10127541 |
T |
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| Q |
208 |
ggaacccaacgacatttaattgttgttggctcatttagcgagcggtagttaacagtcattgagaacgaatgacaattaactaccgtgccaagagcatttt |
307 |
Q |
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| T |
10127542 |
ggaacccaacgacatttaattgttgttggctcatttagcgagcagtagttaacagtcattgagaacgaatgacaattaactaccgcgctgagagcatttt |
10127641 |
T |
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| Q |
308 |
ga |
309 |
Q |
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| T |
10127642 |
ga |
10127643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 52075918 - 52075809
Alignment:
| Q |
87 |
ctataaaatataacctattggtttctattgtctgaagtcaatggcatgttaagcaaatgaaaagagattgatttgtgttttggagaaatgt-ggaggtgt |
185 |
Q |
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| T |
52075918 |
ctataaattatcatctatcgttttctattgtctttagaaaatgacatgttaagcaaatgaaaagaggttgatttgtattttggagaagtgtgggagatgt |
52075819 |
T |
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| Q |
186 |
tgttgctatt |
195 |
Q |
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| T |
52075818 |
tgttgctatt |
52075809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 42460193 - 42460132
Alignment:
| Q |
8 |
acaacatcctcagggacaatgacatgtttggctttcttaattgtgtttgtgtattataattg |
69 |
Q |
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| T |
42460193 |
acaacatccttagggataatgtcatgtaagactttcttaattgcgtttatgtattataattg |
42460132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 7290435 - 7290383
Alignment:
| Q |
126 |
aatggcatgttaagcaaatgaaaagagattgatttgtgttttggagaaatgtg |
178 |
Q |
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| T |
7290435 |
aatggcatgttaagcaaatggaaagaggttggtttgtgttttagagaaatgtg |
7290383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 37234273 - 37234390
Alignment:
| Q |
132 |
atgttaagcaaatgaaaagagattgatttgtgttttggagaaatgt-ggaggtgttgttgctattttggtgaaagccggaacccaacgacatttaattgt |
230 |
Q |
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||||||||||||| || || |||||||||||||||||||| ||| ||||||| |||| ||||||| || || | ||||||||||| | |||| || |
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| T |
37234273 |
atgttaagcaaatagaagcaggttgatttgtgttttggagaagtgtgggaggtgatgtttttattttgatgcaaatcagaacccaacgatagttaaccgt |
37234372 |
T |
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| Q |
231 |
tgttggctcatttagcga |
248 |
Q |
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| T |
37234373 |
tgttggttcatttagcga |
37234390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 15418752 - 15418814
Alignment:
| Q |
140 |
caaatgaaaagagattgatttgtgttttggagaaatgtg-gaggtgttgttgctattttggtg |
201 |
Q |
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| T |
15418752 |
caaatggaaagaggttggtttgtgttttggagtagtgtgtgaggtgttgttgctattgtggtg |
15418814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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