View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1735-Insertion-5 (Length: 885)
Name: NF1735-Insertion-5
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 12 - 885
Target Start/End: Original strand, 27922446 - 27923321
Alignment:
| Q |
12 |
tatccataggcttgtgataaatcaaaacattttaaatccactcttcaaagccttgcatgattcataaaaattaaagctagaaatcaaatctcagatatgc |
111 |
Q |
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| T |
27922446 |
tatccataggcttgtgataaatcaaaacattttaaatccactcttcaaagccttgcatgattcataaaaatgaaagctagaaatcaaatctcagatatgc |
27922545 |
T |
|
| Q |
112 |
ttgctgtgtacatggatgatatgatttttacatttggagaaaaaacagactacatcggacacctatatttagtgttttttgaagtgcgcaagcacaatat |
211 |
Q |
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| T |
27922546 |
ttgtggtgtacatggatgatatgatttttacatttggagaaaaaacagactacatcggacacctatatttagtgttttttgaagtgcgcaagcacaatat |
27922645 |
T |
|
| Q |
212 |
gcgacttaactcagaaaaatgcataccttcaaggtctaagagggaaannnnnnngggggttctatatcaccaaggagggagtagaagcaagccctgataa |
311 |
Q |
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| T |
27922646 |
gcgacttaactcagaaaaatgcataccttcaaggtctaagagggaaaaaattt-gggggttctatatcaccaagcagggagtagaagcaagccctgataa |
27922744 |
T |
|
| Q |
312 |
gtgttgagcaaacatcaccatggacatcccaccggaaagaagagactccaaacagtcaatggagtgatcacaactttctcacatgcatgtttcatcttta |
411 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
27922745 |
gtgtcgaacaaacatcaccatggacatcccaccggaaagaagagactccaaacagtcaatggagtgatcacaactctctcacatg----tttcatcttta |
27922840 |
T |
|
| Q |
412 |
acccgacacattacaccctaccattctattgtttcttacgaaaggagacgcgcttcaagcggaa-gacgagtgtgagaccacattctcttggttaaag-- |
508 |
Q |
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| T |
27922841 |
acccgacacattacaccctaccattctattgtttcttacgaaaggagacgcacttcaagcggaccgacgagtgtgagaccacattctcttggttaaagaa |
27922940 |
T |
|
| Q |
509 |
--ttcaatctcaactcccgataatttcaagactggaccccatagagaaacaatttgtttatatagttgtttcaaaaaaggaagccagtgttgtcctaacc |
606 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27922941 |
agttcaatctcaacccccgataatttcaagactggaccccatagagaaacaatttgtttatatagttgtttcaaaaaaggaagccagtgttgtcctaacc |
27923040 |
T |
|
| Q |
607 |
aggaaggacgatgaaacccaacactaggtatactttatggacaaagtactcaaagggaccgaggtaagacaaaaaatcgaaaaggttgccttagccctga |
706 |
Q |
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| T |
27923041 |
agggaggacgatgaaacccaacactaggtatactttatgaacaaagtactcaaagggaccgaggtaagacaaaaaatcgaaaaggttgccttagccctga |
27923140 |
T |
|
| Q |
707 |
tgacacctacgagaaagctttgtcgagacttcatggcctaccctactgtggtgtggattaaccaacccattaaacacatgttattcataccagattttgc |
806 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27923141 |
tgatacctacaagaaagctttgtcgagacttcatggcctaccctactgtggtgtggattaaccaacccattaaacacatgttgttcataccagattttgc |
27923240 |
T |
|
| Q |
807 |
ctagaaaatgacaaaatgggcactggaactctcc-aatttgaaattacatttgaatgcctc-aaactcttgtaagctaagt |
885 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27923241 |
ctagcaaatgacaaaatgggcactggaactctccaaattcgaaattacatttgaatgcctcaaaactcttgtaagctaagt |
27923321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 53632304 - 53632231
Alignment:
| Q |
8 |
catgtatccataggcttgtgataaatcaaaacattttaaatccactcttcaaagccttgcatgattcataaaaa |
81 |
Q |
| |
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|||||||| |||| || |||| ||||||||||||||||||| ||| || |||| ||||||||| |||| |||| |
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| T |
53632304 |
catgtatcattaggtttatgatgaatcaaaacattttaaatcaactttttaaaggcttgcatgagtcatgaaaa |
53632231 |
T |
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