View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1735-Insertion-6 (Length: 722)
Name: NF1735-Insertion-6
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 188 - 445
Target Start/End: Original strand, 37355876 - 37356133
Alignment:
| Q |
188 |
tcgcgcaaacctcctctggcaattcagaccnccaaactgcaccttgaagggagccccccataattgctaccttataagcacaacaattatcttctcgaat |
287 |
Q |
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| T |
37355876 |
tcgcgcgaacctcctctggcaattcagaccgtcaaactgcaccttgaagggagccccccataattgttagcttgtcagcacaacatttaccttcccgaat |
37355975 |
T |
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| Q |
288 |
ctaaaattagcttctcaaccgttgatttcaaatgtataaaattttaatttaaatatgaaagaatttaatgatatttgtaacataacattgatttaatcac |
387 |
Q |
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| T |
37355976 |
ctaaaattagcttctcaaccgttaatttcaaatgtataaaattttaatttaaatatgaaagaatttaatgatatttgtaacataacattggtttaatcac |
37356075 |
T |
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| Q |
388 |
ggtaccaataaaaaacattggtttaattactctattcgaaaacaaaattaagattacg |
445 |
Q |
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| T |
37356076 |
ggtaccaataaaaaacattggtttaattactctattcgaaaacaaaattaagattacg |
37356133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 446 - 722
Target Start/End: Original strand, 37356963 - 37357245
Alignment:
| Q |
446 |
acttgtattcaatattcatactacnnnnnnnactccagagacagataattattacctgatgaatgacctatttgttccaagnnnnnnnn------ttata |
539 |
Q |
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| T |
37356963 |
acttatattcaatattcatactactttttttactccaga--cagataattattacctgatgaatgacctatttgttacaaaaaaaaaaaaaaatattatg |
37357060 |
T |
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| Q |
540 |
aatgagttgaggttcacccttgatttatatacattaattgttttagcattttgagatacaaacaagagtaaaaactcatttttaagaaaaacaatttggt |
639 |
Q |
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| T |
37357061 |
aatgagttgaggttcaccgttgatttatatacattaattgttttggcattttgagatacaaacaagagtaaaaactcatttttaagaaaaacaatttggt |
37357160 |
T |
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| Q |
640 |
acatcacttttaaagaatttcgaaatgcgatatattttttatg---aaagaaaaaatgatatcataataatgagttgggaaatgct |
722 |
Q |
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| T |
37357161 |
acatcacttttaa-gaatttcgaaatgcgatatattttttttttttaaaagaaaaatgatatcataataatgagttgagaaatgct |
37357245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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