View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1735-Insertion-8 (Length: 892)

Name: NF1735-Insertion-8
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1735-Insertion-8
NF1735-Insertion-8
[»] chr3 (6 HSPs)
chr3 (54-847)||(40582688-40583471)
chr3 (600-857)||(54872361-54872619)
chr3 (264-516)||(54872794-54873047)
chr3 (25-182)||(54873093-54873251)
chr3 (22-90)||(40583472-40583540)
chr3 (858-892)||(40582661-40582695)
[»] chr6 (4 HSPs)
chr6 (600-871)||(7019496-7019767)
chr6 (303-516)||(7019942-7020156)
chr6 (25-182)||(7020241-7020399)
chr6 (186-234)||(7020220-7020267)
[»] chr2 (2 HSPs)
chr2 (303-400)||(37786014-37786113)
chr2 (181-229)||(37785898-37785945)
[»] chr8 (1 HSPs)
chr8 (25-75)||(15919464-15919514)
[»] chr4 (1 HSPs)
chr4 (615-657)||(46785379-46785421)


Alignment Details
Target: chr3 (Bit Score: 683; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 54 - 847
Target Start/End: Complemental strand, 40583471 - 40582688
Alignment:
Q  54 cctggacgataataacattatcaagcgtacctctttaggaataaaaccactttggattgggttgataaggctatttaagtgatgtataatcctcatcacc 153  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  40583471 cctggacgataataacattatcaaccatacctctttaggaataaaaccactttgaattgggttgataaggctatttaagtgatgtataaacctcatcacc 40583372  T
Q  154 agcacctttgaagtaattttaagcataaccaacacctttgaaataattttaagcataatatttgcaaaggctaataggcctnnnnnnnncttaaaaacaa 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  40583371 agcacctttgaagtaattttaagcataaccaacacctttgaaataattttaagcataatatttgcaaaggctaataggcctaaaaaaaacttaaaaacaa 40583272  T
Q  254 aggagcatcaatcaattttaggaattgagattataagagccgcaatcatttttggatcaatagtacctgattgaaaagcagaggaagccaatttatgaac 353  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40583271 aggagcatcaatcaattttaggaattgatattataagagccgcaatcatttttggatcaatagtacctgattgaaaagcagaggaaaccaatttatgaac 40583172  T
Q  354 ttaaggaaacaatattccaaaatgttttcaagaaaataagttggaacccatttggaaaaggatccatatatgaattcatcgatataagagctgacttgac 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40583171 ttaaggaaacaatattccaaaatgttttcaagaaaataagttggaacccatttggaaaaggatccatatatgaattcatcgataaaagagctgacttgac 40583072  T
Q  454 ctctttgaagacttgggttaaggcaaagagagtcgtaaagatcagcgctgatatgaggaaagttcgagaactggatgctagcaaaactagttgatccctt 553  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40583071 ctctttgaggacttgggttaaggcaaagagagtcgtaaagatcagcgctgatatgaggaaagttcgagaactggatgctagcaaaactagttgatccctt 40582972  T
Q  554 gtcttgaaataagctcccaaaggattgacaaagatcgacaaagatattgtattcttattctcaaatttaactcaattctctcttgatttttgataccata 653  Q
    |||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  40582971 gtcttgaaataagctcccaaaggattgacaa----------agatattgtattcttattctcaaatttaacccaattctctcttgattttttataccata 40582882  T
Q  654 acatcttgtcttgagccaaaaccttgttatactcatttggcaaatgtctttcaaaattgacaagatcagaagattgacaataatcaagttgttgatgcat 753  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40582881 acatcttgtcttgagccaaaaccttgttatactcatttggcaaatgtctttcaaaattgacaagatcagaagattgacaataatcaagttgttgatgcat 40582782  T
Q  754 tcgttccatcctagtctccaactgtcttttatttttataatgttgccaaagatatcaggattaaatctctctgaagatttgtggactgccttaa 847  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40582781 tccttccatcctagcctccaactgtcttttatttttataatgttgccaaagatatcaggattaaatctctctgaagatttgtggactgcattaa 40582688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 600 - 857
Target Start/End: Complemental strand, 54872619 - 54872361
Alignment:
Q  600 ttgtattcttattctcaaatttaactcaattctctcttgatttttgataccataacatcttgtcttgagccaaaaccttgttatactcatttggcaaatg 699  Q
    ||||||||||||| ||||||||||  |||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||    
T  54872619 ttgtattcttattttcaaatttaatccaattctctcttgacttttgataccacaacatcttctcttgagccaagaccttgttatactcattttgcaaatg 54872520  T
Q  700 tctttcaaaattgacaagatcagaagattgacaataatcaagttgttgatgcattcgttccatcctagtctccaactgtcttttattttt-ataatgttg 798  Q
     ||||||||||||| ||||||||| || ||||||||||||||||||||||||| || ||  ||| | |  ||||| |||||||||||||| | ||| ||     
T  54872519 cctttcaaaattgataagatcagaggactgacaataatcaagttgttgatgcactcctttgatcattgcttccaattgtcttttatttttaaaaatatta 54872420  T
Q  799 ccaaagatatcaggattaaatctctctgaagatttgtggactgccttaagcttagagat 857  Q
    ||||||||||||  |||||||||||| ||||| || ||||| || |  |||||||||||    
T  54872419 ccaaagatatcaaaattaaatctctcagaagacttttggaccgcttggagcttagagat 54872361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 264 - 516
Target Start/End: Complemental strand, 54873047 - 54872794
Alignment:
Q  264 atcaattttaggaattgagattataagagccgcaatcatttttggatcaatagtacctgattgaaaagcagaggaagccaatttatgaactta--aggaa 361  Q
    ||||||||||||||| |  |  ||||||| | || ||| ||||||||| || |||||| |||||||||||| |||| |||| |||||||||||  |||||    
T  54873047 atcaattttaggaataggaacaataagagtctcagtcaattttggatcgatggtacctaattgaaaagcagtggaaaccaagttatgaacttatgaggaa 54872948  T
Q  362 acaatattccaaaatgttttcaagaaaataagttggaacccatttggaaaaggatccatatatgaattcatcgatataagagctgacttgacctctttga 461  Q
    |||||||||||||| ||||| ||||||||| |||| ||||||| | ||  |||| || |||| ||||||||||| | |||||   |||||||||| || |    
T  54872947 acaatattccaaaaagttttaaagaaaataggttgaaacccatcttgaccaggagccttataagaattcatcgaaaaaagagaaaacttgacctc-ttca 54872849  T
Q  462 agacttgggttaaggcaaagagagtcgtaaagatcagcgctgatatgaggaaagt 516  Q
    ||||||||||| ||||||||||| |  |||||||||   || |||||||||||||    
T  54872848 agacttgggttcaggcaaagagaattataaagatcaatactaatatgaggaaagt 54872794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 54873251 - 54873093
Alignment:
Q  25 tttcttcttagtcatgttatgaactatttcctggacgataataacattatcaagcgtacctc-tttaggaataaaaccactttggattgggttgataagg 123  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||||||||  ||| | || |||||||||||||| |||||| |  ||| ||||||||    
T  54873251 tttcttcttattcatgttatgaactatttcatgtacgataataacattatcagtcgtgcttcgtttaggaataaaactactttgaaaagggctgataagg 54873152  T
Q  124 ctatttaagtgatgtataatcctcatcaccagcacctttgaagtaattttaagcataac 182  Q
    |||||||| ||| || ||||||||  |||||||||||| ||| ||||||||||||||||    
T  54873151 ctatttaaatgaggtctaatcctccccaccagcaccttagaaataattttaagcataac 54873093  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 40583540 - 40583472
Alignment:
Q  22 ccttttcttcttagtcatgttatgaactatttcctggacgataataacattatcaagcgtacctcttta 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40583540 ccttttcttcttagtcatgttatgaactatttcctggacgataataacattatcaaccgtacctcttta 40583472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 858 - 892
Target Start/End: Complemental strand, 40582695 - 40582661
Alignment:
Q  858 tgcattaacaacaatgtcactctattgaactaaag 892  Q
    |||||||||||||||||||||||||||||||||||    
T  40582695 tgcattaacaacaatgtcactctattgaactaaag 40582661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 2e-61; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 600 - 871
Target Start/End: Complemental strand, 7019767 - 7019496
Alignment:
Q  600 ttgtattcttattctcaaatttaactcaattctctcttgatttttgataccataacatcttgtcttgagccaaaaccttgttatactcatttggcaaatg 699  Q
    |||||||||||||  |||||||||| ||||||||||| || ||||||||||| ||||| |  ||||||||||| || |||||||||||||||  ||||||    
T  7019767 ttgtattcttatttccaaatttaacccaattctctctcgacttttgataccacaacatatcctcttgagccaagac-ttgttatactcatttttcaaatg 7019669  T
Q  700 tctttcaaaattgacaagatcagaagattgacaataatcaagttgttgatgcattcgttccatcctagtctccaactgtcttttattttt-ataatgttg 798  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||||||| || ||  ||||||  |||||| |||||||||||||| | ||||||     
T  7019668 tcttttaaaattgataagatcagaagactgacaataatcaagttgttgatgcactcctttaatcctaacctccaattgtcttttatttttaaaaatgtta 7019569  T
Q  799 ccaaagatatcaggattaaatctctctgaagatttgtggactgccttaagcttagagattgcattaacaacaa 871  Q
    ||||||||||||| ||||||||| |||||||| || ||||| || | ||||||||||||  ||||| ||||||    
T  7019568 ccaaagatatcagaattaaatctttctgaagacttttggaccgcttgaagcttagagatcacattaccaacaa 7019496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 303 - 516
Target Start/End: Complemental strand, 7020156 - 7019942
Alignment:
Q  303 ttttggatcaatagtacctgattgaaaagcagaggaagccaatttatgaactta--aggaaacaatattccaaaatgttttcaagaaaataagttggaac 400  Q
    ||||||||| || ||||||||||||||||||| |||| |||| ||||||||||   ||||||| ||||||||||||||||| ||||||||| ||||||||    
T  7020156 ttttggatcgatggtacctgattgaaaagcagtggaaaccaagttatgaacttctgaggaaacgatattccaaaatgttttgaagaaaataggttggaac 7020057  T
Q  401 ccatttggaaaaggatccatatatgaattcatcgatataagagctgacttgacctctttgaagacttgggttaaggcaaagagagtcgtaaagatcagcg 500  Q
    |||| ||||  |||| || |||| |||||||| || | |||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||       
T  7020056 ccatctggaccaggagccttataagaattcattgagaaaagagcagacttgacctc-ttcaagacttgggttcaggcaaagagagtcgtaaagatcaata 7019958  T
Q  501 ctgatatgaggaaagt 516  Q
    || |||||||||||||    
T  7019957 ctaatatgaggaaagt 7019942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 7020399 - 7020241
Alignment:
Q  25 tttcttcttagtcatgttatgaactatttcctggacgataataacattatcaagcgtacctc-tttaggaataaaaccactttggattgggttgataagg 123  Q
    |||||| ||| | ||| ||||||||||||| ||  |||||||||||||||||  ||| |||| |||||||||||||| |||||| |  ||| |||||||     
T  7020399 tttctttttatttatgctatgaactatttcgtgtgcgataataacattatcagtcgtgcctcgtttaggaataaaactactttgaaaagggctgataaga 7020300  T
Q  124 ctatttaagtgatgtataatcctcatcaccagcacctttgaagtaattttaagcataac 182  Q
    |||||||| ||| || ||||||||  ||| |||||||| ||| ||||||||||||||||    
T  7020299 ctatttaaatgaggtctaatcctccccactagcaccttagaaataattttaagcataac 7020241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 7020267 - 7020220
Alignment:
Q  186 cacctttgaaataattttaagcataatatttgcaaaggctaataggcct 234  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  7020267 caccttagaaataattttaagcataaca-ttgcaaaggctaataggcct 7020220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 303 - 400
Target Start/End: Original strand, 37786014 - 37786113
Alignment:
Q  303 ttttggatcaatagtacctgattgaaaagcagaggaagccaatttatgaactta--aggaaacaatattccaaaatgttttcaagaaaataagttggaac 400  Q
    |||||||||||| |||||| ||||||||| ||  |||  ||| ||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||    
T  37786014 ttttggatcaatggtacctcattgaaaagaagtagaaatcaagttatgaacttctgaggaaacaatattccaaaatgttttgaagaaaataagttggaac 37786113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 37785898 - 37785945
Alignment:
Q  181 accaacacctttgaaataattttaagcataatatttgcaaaggctaata 229  Q
    |||||||||||  |||||||||||||||||||| |||||||||||||||    
T  37785898 accaacaccttgaaaataattttaagcataata-ttgcaaaggctaata 37785945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 15919464 - 15919514
Alignment:
Q  25 tttcttcttagtcatgttatgaactatttcctggacgataataacattatc 75  Q
    |||||||||| ||||| |||||||||||||||   ||||||||||||||||    
T  15919464 tttcttcttattcatgctatgaactatttcctatgcgataataacattatc 15919514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 615 - 657
Target Start/End: Original strand, 46785379 - 46785421
Alignment:
Q  615 caaatttaactcaattctctcttgatttttgataccataacat 657  Q
    |||||||||| |||||||| || ||||||||||||||||||||    
T  46785379 caaatttaacccaattctccctagatttttgataccataacat 46785421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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