View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1735-Insertion-9 (Length: 661)
Name: NF1735-Insertion-9
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735-Insertion-9 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 5 - 661
Target Start/End: Original strand, 42315085 - 42315723
Alignment:
| Q |
5 |
acaatcacatactttaaacatgacattgatataaagtctagatgtttttgtgacaattgtttattgtgtcttgtgttccagcctgacatcactgcacctg |
104 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42315085 |
acaattacagactttaaacaggacattgatataaagtctagatgtttttgtgacaattgtttattgtgtcttgtgttccagccagacatcactgcacctg |
42315184 |
T |
|
| Q |
105 |
gagtgaacataattgctgcttacacagaaatcaatagtgaatatgaaatcaatagaaggatttcgtacaaatccttgtctggaacttctatggcatgccc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42315185 |
gagtgaacataattgctgcttacacagaaa------------------tcaatagaaggatttcgtacaaatccttgtctggaacttctatggcatgccc |
42315266 |
T |
|
| Q |
205 |
tcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatgaccacgggtacgacatcaatt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42315267 |
tcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatgaccacgggtacgacatcaatt |
42315366 |
T |
|
| Q |
305 |
aatcatccaacctatttcaatttttaaaaaataattactagacagctgtcgtgtttttgcagggctagtcctggtgcaatggtaaggttgtttccttgtg |
404 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42315367 |
aatcatccaacctatttcaatttttttaaaataattactagacagctgtcgtgtttttgcagggctagtcctggtgcaatggtaaggttgtttccttgtg |
42315466 |
T |
|
| Q |
405 |
acttaaaagtcgcgggttcaaatccttaaaacagtctcttcattaacgattttttatgtcatattttttgttcataactcataaatatgagcttcttaaa |
504 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42315467 |
acttaaaagccgcgggttcaaatcattaaaacagtcacttcattgacgattttttatgtcatattttttgttcataactcataaatatgagcttcttaaa |
42315566 |
T |
|
| Q |
505 |
cttaacataaaactttgtctatttcagcaagcaaaatggataacagtaaaagacctatcaaggatcgattcggtgaaaatgcgactccatttgcatatgg |
604 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42315567 |
cttaacacaaaactttgtctatttcagcaagcaaaatggataacagtaaaagacctatcaaggatcgattcggtgaaaatgcaactccatttgcatatgg |
42315666 |
T |
|
| Q |
605 |
ttcgggtcacgttcaacctaatcttgctatagaccctggactaatttgtgatcttaa |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42315667 |
ttcgggtcacgttcaacctaatcttgctatagaccctggactaatttatgatcttaa |
42315723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 42325003 - 42325094
Alignment:
| Q |
171 |
acaaatccttgtctggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagca |
262 |
Q |
| |
|
||||||| ||||| |||||||| || || |||| |||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42325003 |
acaaatcattgtcatgaacttctttgtcaagcccccatgtgtctgacatactaggtcttctcaaaacacttcattctaaatggagtccagca |
42325094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 42325403 - 42325469
Alignment:
| Q |
530 |
agcaagcaaaatggataacagtaaaagacctatcaaggatcgattcggtgaaaatgcgactccattt |
596 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||| |||| ||||||||| ||||||||| |
|
|
| T |
42325403 |
agcaagcaaaatggataaaaacaaaagacctatcctggatcagttcgatgaaaatgcaactccattt |
42325469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 37016463 - 37016375
Alignment:
| Q |
185 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatc |
273 |
Q |
| |
|
|||||||| ||| | || |||||||| ||||||| | || |||||||| ||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
37016463 |
ggaacttcaatgtcttgtcctcatgttgctggcattgtcggtcttctcaagacacttcatcctagttggagtccagctgccatcaaatc |
37016375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 31049759 - 31049651
Alignment:
| Q |
185 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
284 |
Q |
| |
|
|||||||||||| | || |||||||| |||||| || || ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
31049759 |
ggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatga |
31049660 |
T |
|
| Q |
285 |
ccacgggta |
293 |
Q |
| |
|
|||| |||| |
|
|
| T |
31049659 |
ccacaggta |
31049651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 31062082 - 31061974
Alignment:
| Q |
185 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
284 |
Q |
| |
|
|||||||||||| | ||||||||||| |||| | || || ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
31062082 |
ggaacttctatgtcttgccctcatgttgctgggactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctattatga |
31061983 |
T |
|
| Q |
285 |
ccacgggta |
293 |
Q |
| |
|
|||| |||| |
|
|
| T |
31061982 |
ccactggta |
31061974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 31162655 - 31162547
Alignment:
| Q |
185 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
284 |
Q |
| |
|
|||||||||||| | || |||||||| |||||| || || ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
31162655 |
ggaacttctatgtcttgtcctcatgttgctggcactgctggacttatcaaaacacttcatcctaattggagtccagcagctattaaatcagctatcatga |
31162556 |
T |
|
| Q |
285 |
ccacgggta |
293 |
Q |
| |
|
|||| |||| |
|
|
| T |
31162555 |
ccactggta |
31162547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 31202982 - 31203091
Alignment:
| Q |
185 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
284 |
Q |
| |
|
|||||||||||| | ||||||||||| | ||||| || || ||| |||||||| | |||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
31202982 |
ggaacttctatgtcttgccctcatgttgccggcattgcgggacttatcaaaacattgcatcctaattggagtccagcagctattaaatcagctatcatga |
31203081 |
T |
|
| Q |
285 |
ccacgggtac |
294 |
Q |
| |
|
|||| ||||| |
|
|
| T |
31203082 |
ccacaggtac |
31203091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 31144831 - 31144723
Alignment:
| Q |
185 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
284 |
Q |
| |
|
|||||||||||| | || |||||||| ||||| || || ||| ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||| |
|
|
| T |
31144831 |
ggaacttctatgtcttgtcctcatgttgttggcactgctggacttatcaaaacacttcatcctaattggagtcctgcagctattaaatcagctatcatga |
31144732 |
T |
|
| Q |
285 |
ccacgggta |
293 |
Q |
| |
|
|||| |||| |
|
|
| T |
31144731 |
ccactggta |
31144723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 31107207 - 31107145
Alignment:
| Q |
231 |
tcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatgaccacgggta |
293 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
31107207 |
tcaaaacacttcatcctaattggagtccagcagctattaaatcggctataatgaccactggta |
31107145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 24268666 - 24268766
Alignment:
| Q |
185 |
ggaacttctatggcatgccctcatgtgtctggcatagcaggccttctcaaaacacttcatcctaaatggagtccagcagctatcaaatcagctattatga |
284 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||| | | |||||||||||| || ||||||| |||||||| |||||| | ||||| ||||| |||| |
|
|
| T |
24268666 |
ggaacttctatatcatgccctcatgtttctgccattgttgctcttctcaaaacaatttatcctaattggagtcctgcagcttttaaatctgctatcatga |
24268765 |
T |
|
| Q |
285 |
c |
285 |
Q |
| |
|
| |
|
|
| T |
24268766 |
c |
24268766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 42761440 - 42761397
Alignment:
| Q |
83 |
cagcctgacatcactgcacctggagtgaacataattgctgctta |
126 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
42761440 |
cagcctgacatcactgcaccaggagtcaacataattgcagctta |
42761397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 42736246 - 42736299
Alignment:
| Q |
240 |
ttcatcctaaatggagtccagcagctatcaaatcagctattatgaccacgggta |
293 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| || |||||||| |||| |
|
|
| T |
42736246 |
ttcatcctgattggagtccagcagctatcaagtcagcaatcatgaccacaggta |
42736299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 42715810 - 42715762
Alignment:
| Q |
78 |
tgttccagcctgacatcactgcacctggagtgaacataattgctgctta |
126 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
42715810 |
tgttctagcctgacatcaccgcaccaggagtcgacataattgctgctta |
42715762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14789 times since January 2019
Visitors: 8422