View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1735_high_3 (Length: 291)
Name: NF1735_high_3
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735_high_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 4309327 - 4309603
Alignment:
| Q |
1 |
ctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacaacttccacagcattaagagtgttattcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
4309327 |
ctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacagcttccacagcataaagagtgttattcaa |
4309426 |
T |
|
| Q |
101 |
cctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaataaagataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4309427 |
cctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaataaagataga |
4309526 |
T |
|
| Q |
201 |
aaagcttcaccaacagctgcagcagccatgatcacaatggagaagataattgattcgatgagattagaccagggatt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4309527 |
aaagcttcaccaacagctgcagcagccatgatcacgatggagaagataattgattcgatgagattagaccagggatt |
4309603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4253189 - 4252955
Alignment:
| Q |
1 |
ctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacaacttccacagcattaagagtgttattcaa |
100 |
Q |
| |
|
||||||||||||||| |||| | |||||||||| || |||||||||||| |||||| |||| || | |||| |||||||||||| ||||||||| ||||| |
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|
| T |
4253189 |
ctttgagatcatcgatccatctgttaatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttccacagcataaagagtgttcttcaa |
4253090 |
T |
|
| Q |
101 |
cctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaataaagataga |
200 |
Q |
| |
|
|||||| |||||||||| || |||||| |||||| |||| ||| ||| ||||| ||||||||| |||||||| |||||||||||||| || ||| ||| |
|
|
| T |
4253089 |
cctttggaccaaattgacgtcaactttcttcccacggatcaagacaacaacctcaggagaagcgagcctgtcgaggacaacttcaatgaaagcagacaga |
4252990 |
T |
|
| Q |
201 |
aaagcttcaccaacagctgcagcagccatgatcac |
235 |
Q |
| |
|
|| |||||||| ||||| || | ||||||||||| |
|
|
| T |
4252989 |
aatgcttcacctacagccgccactgccatgatcac |
4252955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4315311 - 4315542
Alignment:
| Q |
1 |
ctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacaacttccacagcattaagagtgttattcaa |
100 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||||||||||||| || |||||| |||||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
4315311 |
ctttgagatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaa |
4315410 |
T |
|
| Q |
101 |
cctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaataaagataga |
200 |
Q |
| |
|
|||||| | |||||||| | |||||| |||||| |||| ||||||| ||||| |||||||| ||| ||||||||||||||||||| || ||| | | |
|
|
| T |
4315411 |
cctttggatcaaattgacggcaactttcttcccacggatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagcagacaaa |
4315510 |
T |
|
| Q |
201 |
aaagcttcaccaacagctgcagcagccatgat |
232 |
Q |
| |
|
||||||||||||||| | || || |||||||| |
|
|
| T |
4315511 |
aaagcttcaccaacaaccgccgccgccatgat |
4315542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 4306449 - 4306635
Alignment:
| Q |
1 |
ctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacaacttccacagcattaagagtgttattcaa |
100 |
Q |
| |
|
||||||||||||| |||||||| ||| |||||||||||||| ||||||||| || |||| |||| |||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
4306449 |
ctttgagatcatcaagccatttgataacagcagagtctttgagctgtttctgttcagcatcgttcaacacagcttcaacagcataaagagtgttcttcaa |
4306548 |
T |
|
| Q |
101 |
cctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaat |
187 |
Q |
| |
|
|||||||||||| |||| || |||||| |||||| |||| ||||||| ||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
4306549 |
cctttgaaccaagttgacgtcaactttcttcccacggatcaagtcaacaacctcaggagaagcaagcctgtcgaggacaacttcaat |
4306635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41932609 - 41932376
Alignment:
| Q |
1 |
ctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacaacttccacagcattaagagtgttattcaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||| ||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
41932609 |
ctttgagatcatcgagccatttgttaacagcagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgttcttcaa |
41932510 |
T |
|
| Q |
101 |
cctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaataaagataga |
200 |
Q |
| |
|
|||||| | |||||||| || |||||| |||||| | || ||||||| ||||| ||||||||| ||||||||||||||||||||||| || || ||| |
|
|
| T |
41932509 |
cctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagctgacaga |
41932410 |
T |
|
| Q |
201 |
aaagcttcaccaacagctgcagcagccatgatca |
234 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||| |
|
|
| T |
41932409 |
aatgcttcaccaacagctactgcagccatgatca |
41932376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 34803327 - 34803488
Alignment:
| Q |
1 |
ctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacaacttccacagcattaagagtgttattcaa |
100 |
Q |
| |
|
||||||| ||||||||||| || |||| |||||||||||||| |||||||| ||| |||||| || ||| |||| || |||| |||| || ||||| |
|
|
| T |
34803327 |
ctttgaggtcatcgagccagttgttaacagcagagtctttgatctgtttctattccgcatcataaagaacagcttctactgcatatggagtattcttcaa |
34803426 |
T |
|
| Q |
101 |
cctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaag |
162 |
Q |
| |
|
|| ||| |||||||||| | ||| | |||||| |||| || ||||||| ||||||||||| |
|
|
| T |
34803427 |
ccgttgtaccaaattgacatcaacctgcttcccacggatcaattcaagaatctgaggagaag |
34803488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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