View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1735_high_5 (Length: 235)
Name: NF1735_high_5
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 6388478 - 6388695
Alignment:
| Q |
18 |
gagattatgtattttcgtagtctagtttcctggtttgttcgggcgccaagagatggtagaagatcactagacaaaaagctgctatgtgtataacttccca |
117 |
Q |
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| T |
6388478 |
gagattatgtattttcgtagtctagtttcctggtttgttcgggcgccaagagatggtagaagatcactagacaaaaagctgctatgtgtataacttccca |
6388577 |
T |
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| Q |
118 |
tttccatttcgtccaaccagaacctctggaagacgtttttgagaccggaaaatgacatgttatgagtttagaagttgaatcctaaaagcttcaaaagagg |
217 |
Q |
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| T |
6388578 |
tttccatttcgtccaaccagaacctctggaagaagtttttgagaccggaaaatgacatgttatgagtttagaaattgaatcctcaaagcttcaaaagagg |
6388677 |
T |
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| Q |
218 |
taaagtagttaagttttt |
235 |
Q |
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| T |
6388678 |
tatagtagttaagttttt |
6388695 |
T |
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