View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1735_low_5 (Length: 249)
Name: NF1735_low_5
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1735_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 327785 - 328020
Alignment:
| Q |
1 |
ctgcaacaacaatattttggccgcatcttgtggtcaacaatttaaaaccatagatgaagttgtacgaatctctaaaacttttatatcgcggtcacaattg |
100 |
Q |
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| T |
327785 |
ctgcaacaacaatattttggctgcatcttgtggtccacaatttaaaaccctagatgaagttgtacgaatctctaaaacttttatattgctgtcacaattg |
327884 |
T |
|
| Q |
101 |
cggttagaataccacaatttagaatttattttttaaagaaattattgttagtannnnnnnnnctttcatcaatgtctgatgattaattgtgtaattaact |
200 |
Q |
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| T |
327885 |
cggttagaataccacaatttagaattt-ttttttaaagaaattattgttagtatttttttttctttcatcaatgtctgatgattaattgtgtaattaact |
327983 |
T |
|
| Q |
201 |
attaatggaaaaatttatggatgaatgaatgcagaat |
237 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||| |
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| T |
327984 |
attaatggaatgattaatggatgaatgaatgcagaat |
328020 |
T |
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