View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1735_low_6 (Length: 237)

Name: NF1735_low_6
Description: NF1735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1735_low_6
NF1735_low_6
[»] chr6 (10 HSPs)
chr6 (1-233)||(27589642-27589874)
chr6 (1-233)||(27674071-27674298)
chr6 (31-231)||(26805974-26806180)
chr6 (153-231)||(26638856-26638934)
chr6 (153-231)||(26744822-26744900)
chr6 (126-230)||(26888143-26888244)
chr6 (91-176)||(27424010-27424095)
chr6 (153-237)||(27607770-27607854)
chr6 (168-233)||(27682362-27682427)
chr6 (169-233)||(27703571-27703635)
[»] chr1 (1 HSPs)
chr1 (1-233)||(264823-265044)
[»] chr4 (6 HSPs)
chr4 (153-223)||(18652182-18652252)
chr4 (153-223)||(18720770-18720840)
chr4 (153-223)||(18676240-18676310)
chr4 (153-223)||(18686280-18686350)
chr4 (153-223)||(18696086-18696156)
chr4 (153-223)||(18728206-18728276)
[»] scaffold0003 (1 HSPs)
scaffold0003 (91-176)||(63268-63353)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 27589642 - 27589874
Alignment:
Q  1 tttaaacagaaagccacaaacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589642 tttaaacagaaaaccacaaacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaa 27589741  T
Q  101 tctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589742 tctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaat 27589841  T
Q  201 ataaggattgataaataccacattctcctcctc 233  Q
    |||||||||||||||||||||||||||||||||    
T  27589842 ataaggattgataaataccacattctcctcctc 27589874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 27674071 - 27674298
Alignment:
Q  1 tttaaacagaaagccacaaacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||      ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27674071 tttaaacagaaaaccacaaacctgtgattaattgagagaatct-----tggtgctctttttgttttctgaatctagccctgaatttaggatgcacccaaa 27674165  T
Q  101 tctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27674166 tctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgacaatgaagcattgagatattcatttgattttgtctttctaat 27674265  T
Q  201 ataaggattgataaataccacattctcctcctc 233  Q
    |||||||| ||||||||||||||||||||||||    
T  27674266 ataaggatcgataaataccacattctcctcctc 27674298  T

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Target: chr6; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 26806180 - 26805974
Alignment:
Q  31 attgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaatctttttctgaagatttatacggattgaaa 130  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| || |||||||||||||| || |||||||||||||||||||||    
T  26806180 attgagagaatctagctccggtgctctttttgttttctgaacctagccctgaatttaagaagcacccaaatctttctccgaagatttatacggattgaaa 26806081  T
Q  131 atttatttcgtttccgtttcttttgtgata------atgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacatt 224  Q
    |||| |||||||||  ||||| ||||||||      |||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||    
T  26806080 atttctttcgtttcattttctcttgtgataatgataatgaagcattaagatattcatctgattttgtctttctaatataaggattggtgaataccacatt 26805981  T
Q  225 ctcctcc 231  Q
    |||||||    
T  26805980 ctcctcc 26805974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 26638934 - 26638856
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcc 231  Q
    |||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||| | |||| ||||| |||||||    
T  26638934 ttgtgataatgaagcattcagatattcatctaattttctctttctattataaggattggtgaatatcacatcctcctcc 26638856  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 26744900 - 26744822
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcc 231  Q
    |||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||| | |||| ||||| |||||||    
T  26744900 ttgtgataatgaagcattcagatattcatctaattttctctttctattataaggattggtgaatatcacatcctcctcc 26744822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 26888244 - 26888143
Alignment:
Q  126 tgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattc 225  Q
    ||||||||| |||||||||| ||| |||| ||||||||||| |||||||||||||| |||||||| || ||   |||| |||||| | |||| |||||||    
T  26888244 tgaaaatttctttcgtttccttttattttctgataatgaagtattgagatattcatctgattttgactctc---tatatggattggtgaatatcacattc 26888148  T
Q  226 tcctc 230  Q
    |||||    
T  26888147 tcctc 26888143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 27424010 - 27424095
Alignment:
Q  91 tgcacccaaatctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagata 176  Q
    |||||||| |||||| |||||| ||  ||| ||||||||||||| ||| |||||| |||||||| ||||||||| |||||||||||    
T  27424010 tgcacccacatctttctctgaaaatccataaggattgaaaatttgttttgtttccttttcttttctgataatgatgcattgagata 27424095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 27607770 - 27607854
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcctctgtg 237  Q
    |||| |||| ||||||||| ||| ||||| ||||||| ||||||||||||||||||   | ||||||||||||| ||||||||||    
T  27607770 ttgtaataacgaagcattgcgatgttcatctgattttctctttctaatataaggatcagtgaataccacattcttctcctctgtg 27607854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 27682427 - 27682362
Alignment:
Q  168 attgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcctc 233  Q
    |||||||||||||| ||||||||||||| ||||| ||||||   | ||||||||||||||||||||    
T  27682427 attgagatattcatctgattttgtctttgtaatacaaggatctgtgaataccacattctcctcctc 27682362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 27703571 - 27703635
Alignment:
Q  169 ttgagatattcatttgattttgtctttctaatataaggattgataaataccacattctcctcctc 233  Q
    ||||||||||||| | ||||  |||||| ||||||||||| ||| ||||||||||||||||||||    
T  27703571 ttgagatattcatctaatttcatctttcgaatataaggatcgatgaataccacattctcctcctc 27703635  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 264823 - 265044
Alignment:
Q  1 tttaaacagaaagccacaaacctgtgattaattgagagaatctaggtccggtgctccttttgttttctgaatctagccctgaatttaggatgcacccaaa 100  Q
    |||||| || || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||                  |||||     
T  264823 tttaaaaaggaaaccacaaacctgcgattaattgagagaatctagctccggtgctccttttgttttctgaatctag------------------cccaag 264904  T
Q  101 tctttttctgaagatttatacggattgaaaatttatttcgtttccgtttctttt------gtgataatgaagcattgagatattcatttgattttgtctt 194  Q
    ||||| | |||||||||||| ||||||||||||| |||||||||  ||||||||       |||||||||||||||||||||||||||||||||||||||    
T  264905 tctttctttgaagatttataaggattgaaaatttctttcgtttcattttcttttctgataatgataatgaagcattgagatattcatttgattttgtctt 265004  T
Q  195 t-ctaatataaggattgataaataccacattctcctcctc 233  Q
    | ||||||||||||||| | ||||  ||||| ||||||||    
T  265005 tactaatataaggattggtgaatataacattatcctcctc 265044  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 18652182 - 18652252
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 223  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||| || |||| |||||    
T  18652182 ttgtgataatgaagcattgagatattcatctaattttctctttctactataaggattaatgaatatcacat 18652252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 18720770 - 18720840
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 223  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||| | |||| |||||    
T  18720770 ttgtgataatgaagcattgagatattcatctaattttctctttctactataaggattggtgaatatcacat 18720840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 18676240 - 18676310
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 223  Q
    ||||||||||||||||||||||||||||| |  |||| |||||||| ||||||||||| | |||| |||||    
T  18676240 ttgtgataatgaagcattgagatattcatctatttttctctttctactataaggattggtgaatatcacat 18676310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 18686280 - 18686350
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 223  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||| |||||| |||| | |||| |||||    
T  18686280 ttgtgataatgaagcattgagatattcatctaattttctctttctactataagaattggtgaatatcacat 18686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 18696086 - 18696156
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 223  Q
    ||||||||||||||||||||||||||||| | ||| | |||||||| ||||||||||| | |||| |||||    
T  18696086 ttgtgataatgaagcattgagatattcatctaattctctctttctactataaggattggtgaatatcacat 18696156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 18728206 - 18728276
Alignment:
Q  153 ttgtgataatgaagcattgagatattcatttgattttgtctttctaatataaggattgataaataccacat 223  Q
    ||||||||||||||||||||||||||||| | ||||| ||| |||| ||||||||||| | |||| |||||    
T  18728206 ttgtgataatgaagcattgagatattcatctaattttctctatctactataaggattggtgaatatcacat 18728276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 63353 - 63268
Alignment:
Q  91 tgcacccaaatctttttctgaagatttatacggattgaaaatttatttcgtttccgtttcttttgtgataatgaagcattgagata 176  Q
    |||||||| |||||| |||||| ||  ||| ||||||||||||| ||| |||||| |||||||| ||||||||| |||||||||||    
T  63353 tgcacccacatctttctctgaaaatccataaggattgaaaatttgttttgtttccttttcttttctgataatgatgcattgagata 63268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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