View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859C-Insertion-1 (Length: 334)
Name: NF1859C-Insertion-1
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859C-Insertion-1 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 47 - 334
Target Start/End: Original strand, 33907349 - 33907639
Alignment:
| Q |
47 |
gaaccttgtaggcactgcaaaacacaaccattttcctac---acctcctattttcaatgcacaaagcactaaaaatcagaaaggnnnnnnncctctcaat |
143 |
Q |
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| T |
33907349 |
gaactttgtaggcactacaaaacacaaccattttcctcctatacctcccattttcaatgcacaaaacaataaaaaccagaaagatagaaaaactatcaac |
33907448 |
T |
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| Q |
144 |
accaaaatgaaaatatcaacattttcatttcactatcttctaacatttttcctcataattctaaaccatgcaaaatctcaatctcaacaaaatcttcata |
243 |
Q |
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| T |
33907449 |
accaaaatgaaaatatcaacattttcatttcaccatcttcttacatttttcctcataattctaaaccatgcaaaatctcaatctcaacaaaatcttcata |
33907548 |
T |
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| Q |
244 |
atcaagaacatgaaatcctaatgaaaataaaacaacattttcaaaatccaccaaaccttaatcattggacttcatcaaacacctcttattg |
334 |
Q |
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| T |
33907549 |
accaagaacatgaaaccctaatgaaaataaaacaacattttcaaaatccaccaaaccttaatcattggacttcatcaaacacctcttattg |
33907639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 33914710 - 33914760
Alignment:
| Q |
243 |
aatcaagaacatgaaatcctaatgaaaataaaacaacattttcaaaatcca |
293 |
Q |
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| T |
33914710 |
aatcaagaacatgaaatcctattaaaaataaaaaaccattttcaaaatcca |
33914760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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