View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859C-Insertion-10 (Length: 404)

Name: NF1859C-Insertion-10
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859C-Insertion-10
NF1859C-Insertion-10
[»] chr3 (8 HSPs)
chr3 (8-140)||(48867273-48867403)
chr3 (8-140)||(26798744-26798879)
chr3 (55-132)||(49333173-49333250)
chr3 (45-132)||(35174230-35174318)
chr3 (55-132)||(51400406-51400485)
chr3 (360-397)||(48867015-48867052)
chr3 (215-252)||(48867160-48867197)
chr3 (55-132)||(23560010-23560089)
[»] chr7 (5 HSPs)
chr7 (8-140)||(131838-131972)
chr7 (8-140)||(33459382-33459516)
chr7 (31-132)||(10256290-10256392)
chr7 (10-76)||(28325217-28325284)
chr7 (55-132)||(46458558-46458638)
[»] chr1 (6 HSPs)
chr1 (8-140)||(38280976-38281109)
chr1 (52-135)||(2972853-2972935)
chr1 (31-133)||(13642407-13642506)
chr1 (31-123)||(40811419-40811512)
chr1 (89-132)||(13930522-13930565)
chr1 (89-132)||(14071051-14071094)
[»] chr4 (11 HSPs)
chr4 (8-123)||(11114836-11114953)
chr4 (35-135)||(40144707-40144811)
chr4 (31-140)||(48207558-48207668)
chr4 (31-132)||(17319209-17319313)
chr4 (31-132)||(6140207-6140309)
chr4 (31-132)||(50530670-50530772)
chr4 (55-132)||(52660061-52660139)
chr4 (8-76)||(38555180-38555249)
chr4 (54-112)||(15787142-15787201)
chr4 (89-131)||(28102294-28102336)
chr4 (89-131)||(31712354-31712396)
[»] chr6 (6 HSPs)
chr6 (8-140)||(16268684-16268818)
chr6 (55-132)||(293488-293565)
chr6 (13-132)||(27440020-27440143)
chr6 (8-140)||(9927748-9927883)
chr6 (89-132)||(31738590-31738633)
chr6 (31-133)||(22298771-22298870)
[»] chr2 (6 HSPs)
chr2 (12-140)||(35799659-35799789)
chr2 (31-140)||(42249623-42249733)
chr2 (58-132)||(11575334-11575408)
chr2 (10-132)||(8537157-8537279)
chr2 (55-131)||(7037157-7037234)
chr2 (55-132)||(37868886-37868965)
[»] chr5 (7 HSPs)
chr5 (8-140)||(38471432-38471567)
chr5 (31-132)||(32734298-32734400)
chr5 (55-132)||(12933942-12934020)
chr5 (55-132)||(12948103-12948181)
chr5 (8-76)||(223369-223438)
chr5 (55-129)||(19525138-19525213)
chr5 (31-129)||(40058185-40058285)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-132)||(47218-47341)
[»] scaffold0178 (2 HSPs)
scaffold0178 (31-140)||(1377-1486)
scaffold0178 (215-252)||(1554-1591)
[»] chr8 (5 HSPs)
chr8 (8-140)||(8395138-8395272)
chr8 (31-132)||(13366898-13366999)
chr8 (55-128)||(35944099-35944173)
chr8 (63-132)||(37324536-37324605)
chr8 (55-132)||(19913683-19913760)
[»] scaffold0122 (1 HSPs)
scaffold0122 (31-132)||(16112-16214)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 48867403 - 48867273
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctatttttaaatgaagattgttggatcatggagaggt 106  Q
    |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||  ||| |||||||   ||||||||||||||| ||||||||| |||    
48867403 gaaccaactttgtaggtggtctaccatagactttattaaaatttgtaattttaaccattttatctatt---aaatgaagattgttgaatcatggaggggt 48867307  T
107 ctattgtagcttataataaaccacaaccatctaa 140  Q
    ||||||||||||||||||||||||||||| ||||    
48867306 ctattgtagcttataataaaccacaaccacctaa 48867273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 26798879 - 26798744
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatc--tatttttaaatgaagattgttggatcatggagag 104  Q
    |||||||||||||| ||||||  | ||| ||||||||||||  | |||||||||||||||||||  | |||||||||||| |||||| ||||||||||      
26798879 gaaccaactttgtaggtggtccaccatacactttattaaaaaatttaattttaactgtttgatcgttttttttaaatgaaaattgtttgatcatggagga 26798780  T
105 gtctattgtagcttataataaaccacaaccatctaa 140  Q
     |||||||||||||||  | ||||||||||| ||||    
26798779 atctattgtagcttatggtgaaccacaaccacctaa 26798744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 49333173 - 49333250
Alignment:
55 ttttaactgtttgatctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    ||||||| ||||||| | |||||||||| |||| ||||||||||| ||  ||||||||||||||||||| || |||||    
49333173 ttttaaccgtttgatttttttttaaatgtagatcgttggatcatgaaggagtctattgtagcttataatgaagcacaa 49333250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 35174318 - 35174230
Alignment:
45 aaatttgtaattttaactgtttgatctat-ttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||| || ||||||| ||||||||| | ||||||||| |||   ||||||||||||| | |||||||||| ||||||||||||||||    
35174318 aaatttttatttttaacggtttgatctttgttttaaatggagacccttggatcatggagggatctattgtagtttataataaaccacaa 35174230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 51400406 - 51400485
Alignment:
55 ttttaactgtttgatctat-ttttaaatgaagattgttggatcatggagagg-tctattgtagcttataataaaccacaa 132  Q
    ||||||||||||||||| | ||||||||| |||  |||||||||||||| || ||||||||| |||| ||||||||||||    
51400406 ttttaactgtttgatctttgttttaaatggagaccgttggatcatggagggggtctattgtaacttacaataaaccacaa 51400485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 48867052 - 48867015
Alignment:
360 aagttgtatatccgcaactcatatgagcacaacaacaa 397  Q
    ||||||||||||||||||  ||||||||||||||||||    
48867052 aagttgtatatccgcaaccgatatgagcacaacaacaa 48867015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 48867197 - 48867160
Alignment:
215 caaaactccagaaaattacaaaatttcataactatttt 252  Q
    ||||||||||  ||||||||||||||||||||||||||    
48867197 caaaactccaagaaattacaaaatttcataactatttt 48867160  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 23560010 - 23560089
Alignment:
55 ttttaactgtttgatctattttt--aaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||| |||||||||| |||||  ||||| |||  ||||||||| | |||| | |||||||||||||||| ||||||||    
23560010 ttttaattgtttgatctttttttttaaatggagaccgttggatcaagaagagatatattgtagcttataatgaaccacaa 23560089  T

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Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 131972 - 131838
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctatt-tttaaatgaagattgttggatcatggagagg 105  Q
    ||||||||||||||||||| || | ||| ||||||||||| ||| |||||||||| ||||||||| || ||||||||||||||||||||||||||||||     
131972 gaaccaactttgtaagtggactaccataaactttattaaattttttaattttaaccgtttgatcttttctttaaatgaagattgttggatcatggagaga 131873  T
106 tctattgtagcttataataaaccacaaccatctaa 140  Q
    |||||||||||||||||| ||||||||||| ||||    
131872 tctattgtagcttataatgaaccacaaccacctaa 131838  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 33459516 - 33459382
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctattttt-aaatgaagattgttggatcatggagagg 105  Q
    |||||||||||||| ||||||| | || ||||||||||||||||||||||||||| ||||||| | ||||| |||| |||||||||||||||| |||||     
33459516 gaaccaactttgtaggtggtctaccatggactttattaaaatttgtaattttaaccgtttgatattttttttaaattaagattgttggatcatagagaga 33459417  T
106 tctattgtagcttataataaaccacaaccatctaa 140  Q
    |||||| || |||||||||||||||||||| ||||    
33459416 tctattttaacttataataaaccacaaccacctaa 33459382  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 10256290 - 10256392
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctat-ttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    ||||||| ||||||||  || || ||||||| ||| ||||| | ||||||||| ||| ||||||||||||||| | |||||| ||| |||||||||||||    
10256290 catagaccttattaaatcttttatttttaacggttcgatctttattttaaatggagactgttggatcatggagggatctattatagtttataataaacca 10256389  T
130 caa 132  Q
    |||    
10256390 caa 10256392  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 28325217 - 28325284
Alignment:
10 accaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctatttt 76  Q
    |||||||||||| ||||||| | |||||||||||||||||||  ||||| ||| ||||||||| ||||    
28325217 accaactttgtaggtggtctaccatagactttattaaaattttaaatttaaaccgtttgatctttttt 28325284  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 46458638 - 46458558
Alignment:
55 ttttaactgtttgatctattttt---aaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    ||||||| ||||||||| |||||   |||||  ||| ||||||||||| |||| ||||||||| |||||||| ||||||||    
46458638 ttttaaccgtttgatctttttttgttaaatgtggatcgttggatcatgaagagatctattgtaccttataatgaaccacaa 46458558  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 38280976 - 38281109
Alignment:
8 gaaccaactttgtaagtggtctgcatagactttattaaaatttgtaattttaactgtttgatctatt-tttaaatgaagattgttggatcatggagaggt 106  Q
    ||||||||| |||||||||||| | |||||||||||||  ||| | |||||||| ||||||||| || |||||||||||||||||||||||||||| | |    
38280976 gaaccaactctgtaagtggtctacgtagactttattaattttttttattttaaccgtttgatcttttatttaaatgaagattgttggatcatggagggat 38281075  T
107 ctattgtagcttataataaaccacaaccatctaa 140  Q
    ||||||||| ||||||| ||||||||||| ||||    
38281076 ctattgtagattataatgaaccacaaccacctaa 38281109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 2972935 - 2972853
Alignment:
52 taattttaactgtttgatctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaacca 135  Q
    |||||||||| ||||||| | ||||||| |||||||||||||| ||| |||   |||||||||| ||||||| |||||||||||    
2972935 taattttaaccgtttgatttttttttaa-tgaagattgttggaccatagaggaatctattgtagtttataatgaaccacaacca 2972853  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 13642506 - 13642407
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctattttt-aaatgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    |||| ||||||||||||||| |||||| ||| ||||||||| ||||| |||| |||||||   ||||||  || | |||||||||||||||||| |||||    
13642506 cataaactttattaaaatttttaattt-aaccgtttgatcttttttttaaataaagattg---gatcattaagggatctattgtagcttataatgaacca 13642411  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 40811419 - 40811512
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctatttt-taaatgaagattgttggatcatggagaggtctattgtagcttataat 123  Q
    ||||||| ||||||||  || || ||||||| ||||||| | |||| ||||||||||  ||||||||| |||||| ||||||||| ||||||||    
40811419 catagaccttattaaatcttttatttttaaccgtttgatattttttttaaatgaagaccgttggatcaaggagagatctattgtaacttataat 40811512  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 13930565 - 13930522
Alignment:
89 gttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||||||||||| |||||||||||||||||| | ||||||||    
13930565 gttggatcatggaggggtctattgtagcttatattgaaccacaa 13930522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 14071094 - 14071051
Alignment:
89 gttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||||||||||| |||||||||||||||||| | ||||||||    
14071094 gttggatcatggaggggtctattgtagcttatattgaaccacaa 14071051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 11114953 - 11114836
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctatttt--taaatgaagattgttggatcatggagag 104  Q
    |||||||||||||| ||||||| | |||||||||||||||  || |||||||||||||| ||||| ||||  |||||||||||||||||||||||||| |    
11114953 gaaccaactttgtaggtggtctaccatagactttattaaatgttttaattttaactgttagatctttttttctaaatgaagattgttggatcatggag-g 11114855  T
105 gtctattgtagcttataat 123  Q
    |||||||||||||||||||    
11114854 gtctattgtagcttataat 11114836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 40144707 - 40144811
Alignment:
35 gactttattaaaatttgtaattttaactgtttga----tctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccac 130  Q
    ||||||||||||||||||||||||||| ||||||    | | ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
40144707 gactttattaaaatttgtaattttaaccgtttgatttttttctttttaaatgaagattgttggattatagagagatctattgtagcttataataaaccac 40144806  T
131 aacca 135  Q
    |||||    
40144807 aacca 40144811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 48207668 - 48207558
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctatttttaaa-tgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    |||||| ||||||||| ||| |||||||||| ||||||||| |||| ||| ||||||||||||||||| |||| | |||||||||||||||||| ||| |    
48207668 catagattttattaaattttttaattttaaccgtttgatcttttttaaaaatgaagattgttggatcacggagggatctattgtagcttataatgaacaa 48207569  T
130 caaccatctaa 140  Q
    |||||| ||||    
48207568 caaccacctaa 48207558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 17319209 - 17319313
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctattttt---aaatgaagattgttggatcatggagaggtctattgtagcttataataaac 127  Q
    |||| ||||||||||| ||| |||||||||| ||| ||||| |||||   ||||||||||||||||||||||||| |||||||| ||||||||||| |||    
17319209 cataaactttattaaattttttaattttaaccgttggatctttttttttaaaatgaagattgttggatcatggaggggtctattctagcttataatgaac 17319308  T
128 cacaa 132  Q
     ||||    
17319309 tacaa 17319313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 6140309 - 6140207
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctattttt-aaatgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    ||||||| ||||||||  || || ||||||| ||||||||| ||||| ||||| |||  |||||||||||||| | ||||||||||||||||||||||||    
6140309 catagaccttattaaatcttttatttttaacagtttgatcttttttttaaatggagaccgttggatcatggagggatctattgtagcttataataaacca 6140210  T
130 caa 132  Q
    |||    
6140209 caa 6140207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 50530670 - 50530772
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctat-ttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    ||||||| |||||||| ||| || ||||||| ||| ||||| | ||||||||| ||| ||||||||||||||| | |||||||||| |||||||||||||    
50530670 catagaccttattaaattttttatttttaacggttcgatctttattttaaatggagactgttggatcatggagggatctattgtagtttataataaacca 50530769  T
130 caa 132  Q
    |||    
50530770 caa 50530772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 52660139 - 52660061
Alignment:
55 ttttaactgtttgatctat-ttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    ||||||||||||||||| | ||||||||| |||  |||||||||||||||  |||||||| ||||| ||||||||||||    
52660139 ttttaactgtttgatctttgttttaaatggagaccgttggatcatggagaaatctattgttgcttacaataaaccacaa 52660061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 38555249 - 38555180
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctatttt 76  Q
    |||||||||||||| ||||||| | ||||||||||||||| ||| |||||| ||| ||||||||| ||||    
38555249 gaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttgatctttttt 38555180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 15787142 - 15787201
Alignment:
54 attttaactgtttgatctatttttaaa-tgaagattgttggatcatggagaggtctattg 112  Q
    ||||||||  |||||||| |||||||| ||||||||||||||||||| |||| |||||||    
15787142 attttaaccatttgatctttttttaaaatgaagattgttggatcatgtagagatctattg 15787201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 28102294 - 28102336
Alignment:
89 gttggatcatggagaggtctattgtagcttataataaaccaca 131  Q
    |||||||||||||||| |||||||||| |||| ||||||||||    
28102294 gttggatcatggagagatctattgtaggttattataaaccaca 28102336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 31712396 - 31712354
Alignment:
89 gttggatcatggagaggtctattgtagcttataataaaccaca 131  Q
    |||||||||||||||| |||||||||| |||| ||||||||||    
31712396 gttggatcatggagagatctattgtaggttattataaaccaca 31712354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 16268684 - 16268818
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctatt-tttaaatgaagattgttggatcatggagagg 105  Q
    |||||||||||||| ||||||| | ||||||||||||||| ||| |||||||| | ||||||| | || ||| |||||||||||||||||||||||| |     
16268684 gaaccaactttgtatgtggtctaccatagactttattaaattttttaattttatccgtttgattttttctttgaatgaagattgttggatcatggaggga 16268783  T
106 tctattgtagcttataataaaccacaaccatctaa 140  Q
    |||||| ||||||||||| ||||||||||| ||||    
16268784 tctattttagcttataatgaaccacaaccacctaa 16268818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 293565 - 293488
Alignment:
55 ttttaactgtttgatctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||||  |||||||| |||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||||||    
293565 ttttaaccatttgatctttttttaaatggagatcgttggatcatggagagatctattgtagcttataatgaaccacaa 293488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 27440143 - 27440020
Alignment:
13 aactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctattttt-aaatgaagattgttggatcatggagagg--tct 108  Q
    ||||||||| ||||||| | ||| ||||||||||| ||| |||||||||| ||||||||| ||||| ||||||| ||||||||||||| ||| ||  |||    
27440143 aactttgtaggtggtctaccataaactttattaaattttttaattttaaccgtttgatctttttttaaaatgaaaattgttggatcatagagggggatct 27440044  T
109 attgtagcttataataaaccacaa 132  Q
      ||||||||||||||||||||||    
27440043 tctgtagcttataataaaccacaa 27440020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 9927748 - 9927883
Alignment:
8 gaaccaactttgtaagtggtctgcatagactttattaaaatttgtaattttaactgttt-gatct-attt-ttaaatgaagattgttggatcatggagag 104  Q
    |||||||||||||| ||||||| |  ||||||||||| | ||| |||||||||| |||| ||| | |||| |||||||||||||||||||||||||||      
9927748 gaaccaactttgtaggtggtctaccaagactttattacattttttaattttaaccgttttgattttatttcttaaatgaagattgttggatcatggaggt 9927847  T
105 gtctattgtagcttataataaaccacaaccatctaa 140  Q
     ||||||||||| |||||| ||| ||||||| ||||    
9927848 atctattgtagcatataatgaactacaaccacctaa 9927883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 31738590 - 31738633
Alignment:
89 gttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
31738590 gttggatcatggagagatctattgtagcttataatgaaccacaa 31738633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 22298771 - 22298870
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctattttt-aaatgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    |||| ||||||||||||||| |||||| ||| ||||||||| ||||| |||| |||||||   ||||||  || | |||||||||||||||||| |||||    
22298771 cataaactttattaaaatttttaattt-aaccgtttgatcttttttttaaataaagattg---gatcattaagggatctattgtagcttataatgaacca 22298866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 35799659 - 35799789
Alignment:
12 caactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctattttt--aaatgaagattgttggatcatggagaggtct 108  Q
    ||||||| |||||||||| | |||||||||||||||  || |||||||||| ||||||||| |||||  |||| |||||||||||||||||||| | ||     
35799659 caactttataagtggtctaccatagactttattaaatgttataattttaaccgtttgatcttttttttaaaattaagattgttggatcatggagggatc- 35799757  T
109 attgtagcttataataaaccacaaccatctaa 140  Q
    ||||||| ||||||||||||||||||| ||||    
35799758 attgtagtttataataaaccacaaccacctaa 35799789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 42249733 - 42249623
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctatttttaaa-tgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    |||||| ||||||||| ||| |||||||||| ||||||||| |||| ||| ||||||||||||||||| ||||   |||||||||||||||||| ||| |    
42249733 catagattttattaaattttttaattttaaccgtttgatcttttttaaaaatgaagattgttggatcacggaggaatctattgtagcttataatgaacaa 42249634  T
130 caaccatctaa 140  Q
    |||||| ||||    
42249633 caaccacctaa 42249623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 11575408 - 11575334
Alignment:
58 taactgtttgatctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||| ||||||||| |||||||||| |||  ||||||||||| || | |||||||||||||||||||||||||||    
11575408 taaccgtttgatctttttttaaatggagacagttggatcatgaagggatctattgtagcttataataaaccacaa 11575334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 8537157 - 8537279
Alignment:
10 accaactttgtaagtggt-ctgcatagactttattaaaatttgtaattttaactgtttgatctatttttaaatgaagattgttggatcatggagaggtct 108  Q
    ||||||||| |||||||| |  |||||||||||||||||  | ||||||||||  |||||||| ||||||||||||||| ||| ||||||  || | |||    
8537157 accaactttttaagtggttcaccatagactttattaaaaaatttaattttaaccatttgatctttttttaaatgaagatcgttagatcataaagggatct 8537256  T
109 attgtagcttataataaaccacaa 132  Q
    ||| | ||||||||| ||||||||    
8537257 att-ttgcttataatgaaccacaa 8537279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 7037157 - 7037234
Alignment:
55 ttttaactgtttgatctattttt-aaatgaagattgttggatcatggagaggtctattgtagcttataataaaccaca 131  Q
    ||||||| ||||||||| ||||| ||| | |||  |||||||||||||||| |||||||||| |||| ||||||||||    
7037157 ttttaaccgtttgatcttttttttaaaaggagaccgttggatcatggagagatctattgtaggttattataaaccaca 7037234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 37868965 - 37868886
Alignment:
55 ttttaactgtttgatctatttt--taaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    ||||||| ||||||||| ||||  |||| | |||||||||||||||| || | |||||||||||||||||| || |||||    
37868965 ttttaaccgtttgatcttttttgttaaacggagattgttggatcatgaagggatctattgtagcttataatgaatcacaa 37868886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 38471432 - 38471567
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaa-atttgtaattttaactgtttgatctatttttaaa-tgaagattgttggatcatggagag 104  Q
    ||||||||||| || ||||||| | |||||||||||||   |||| | |||||||| ||||||||| |||||||| |||||||||||||||||| ||| |    
38471432 gaaccaactttataggtggtctaccatagactttattatttattttttattttaaccgtttgatctttttttaaaatgaagattgttggatcatagaggg 38471531  T
105 gtctattgtagcttataataaaccacaaccatctaa 140  Q
     |||||||||||||||||| ||||||||||| ||||    
38471532 atctattgtagcttataatgaaccacaaccacctaa 38471567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 32734298 - 32734400
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctatttttaaa-tgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    ||||||| ||||||||  || || ||||||| ||||||| | |||||||| || |||  |||||||||||||| | ||||||||||||||||||||||||    
32734298 catagaccttattaaatcttttatttttaacagtttgatatttttttaaaatggagaccgttggatcatggagggatctattgtagcttataataaacca 32734397  T
130 caa 132  Q
    |||    
32734398 caa 32734400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 12933942 - 12934020
Alignment:
55 ttttaactgtttgatctatttt-taaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||||  |||||||| |||| ||||||||||  |||||||||||||| | ||||||||| |||||||||||||||||    
12933942 ttttaacgttttgatcttttttataaatgaagaccgttggatcatggagggatctattgtaacttataataaaccacaa 12934020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 12948103 - 12948181
Alignment:
55 ttttaactgtttgatctatttt-taaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||||  |||||||| |||| ||||||||||  |||||||||||||| | ||||||||| |||||||||||||||||    
12948103 ttttaacgttttgatcttttttataaatgaagaccgttggatcatggagggatctattgtaacttataataaaccacaa 12948181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 223369 - 223438
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctatttt 76  Q
    |||||||||||||| ||||||| | ||||||||||||||| ||| |||||| ||| ||||||||| ||||    
223369 gaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttgatctttttt 223438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 19525213 - 19525138
Alignment:
55 ttttaactgtttgatctattttt-aaatgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    ||||||||||||||||| ||||| ||||| |||  |||||||||||||| | || |||||||||||| || |||||    
19525213 ttttaactgtttgatcttttttttaaatggagaccgttggatcatggagggatcaattgtagcttatgatgaacca 19525138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 40058185 - 40058285
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctattttt--aaatgaagattgttggatcatggagaggtctattgtagcttataataaacc 128  Q
    ||||||| ||||||||  || || ||||||||||||||||| |||||  ||||| |||  |||||||||| |||   ||||||||||||| |||| ||||    
40058185 catagaccttattaaatcttttatttttaactgtttgatcttttttttaaaatggagaccgttggatcatagaggaatctattgtagcttgtaattaacc 40058284  T
129 a 129  Q
    |    
40058285 a 40058285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 47218 - 47341
Alignment:
13 aactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatctattttt-aaatgaagattgttggatcatggagagg--tct 108  Q
    ||||||||| ||||||| | ||| ||||||||||| ||| |||||||||| ||||||||| ||||| ||||||| ||||||||||||| ||| ||  |||    
47218 aactttgtaggtggtctaccataaactttattaaattttttaattttaaccgtttgatctttttttaaaatgaaaattgttggatcatagagggggatct 47317  T
109 attgtagcttataataaaccacaa 132  Q
      ||||||||||||||||||||||    
47318 tctgtagcttataataaaccacaa 47341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 1377 - 1486
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctatttttaaa-tgaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    |||||||||||||||  ||| |||||||||| ||||||||| |||||||| |||||||||||  |||| |||| | |||||||||||||||||| ||| |    
1377 catagactttattaattttt-taattttaaccgtttgatctttttttaaaatgaagattgttcaatcacggagggatctattgtagcttataatgaacaa 1475  T
130 caaccatctaa 140  Q
    |||||| ||||    
1476 caaccacctaa 1486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 1554 - 1591
Alignment:
215 caaaactccagaaaattacaaaatttcataactatttt 252  Q
    ||||| |||||||||||||||||||||||| |||||||    
1554 caaaaatccagaaaattacaaaatttcatagctatttt 1591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 8395138 - 8395272
Alignment:
8 gaaccaactttgtaagtggtctgc-atagactttattaaaatttgtaattttaactgtttgatc-tatttttaaatgaagattgttggatcatggagagg 105  Q
    |||||||||||||| ||||||  | ||| ||||||||||||  | |||||||||| |||||||| | |||||||||||| || ||| ||||||||||       
8395138 gaaccaactttgtaggtggtccaccatacactttattaaaaaatttaattttaaccgtttgatcgtttttttaaatgaaaatcgtttgatcatggaggaa 8395237  T
106 tctattgtagcttataataaaccacaaccatctaa 140  Q
    ||||| |||||||||  | ||||||||||| ||||    
8395238 tctatcgtagcttatggtgaaccacaaccacctaa 8395272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 13366999 - 13366898
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccac 130  Q
    ||||||| ||||||||  || || ||||||| ||||||| | ||||||| || ||| |||||||||| | |||| ||||||||||||| |||| ||||||    
13366999 catagaccttattaaaccttttatttttaaccgtttgatatttttttaattggagactgttggatcaagtagagatctattgtagcttgtaatgaaccac 13366900  T
131 aa 132  Q
    ||    
13366899 aa 13366898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 35944099 - 35944173
Alignment:
55 ttttaactgtttgatctat-ttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaacc 128  Q
    ||||||||||||||||| | ||||||||| | || ||||||||||| || ||||||||||| |||||||| ||||    
35944099 ttttaactgtttgatctttattttaaatggaaatcgttggatcatgaaggggtctattgtaacttataatgaacc 35944173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 37324605 - 37324536
Alignment:
63 gtttgatctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    ||||||||| |||||||||| ||||  ||| ||||||||| | |||||||||||||||||  ||||||||    
37324605 gtttgatctttttttaaatggagatcattgaatcatggagggatctattgtagcttataacgaaccacaa 37324536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 19913683 - 19913760
Alignment:
55 ttttaactgtttgatctatttttaaatgaagattgttggatcatggagaggtctattgtagcttataataaaccacaa 132  Q
    |||||||  |||||| | |||||||||| |||  ||||||||| |||| | ||||| |||||||||||| ||||||||    
19913683 ttttaaccatttgatatttttttaaatggagaccgttggatcaaggagggatctatcgtagcttataatgaaccacaa 19913760  T

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Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 16112 - 16214
Alignment:
31 catagactttattaaaatttgtaattttaactgtttgatctatttttaaat-gaagattgttggatcatggagaggtctattgtagcttataataaacca 129  Q
    ||||||| ||||||||  || || ||||||| ||||||| | ||||||||| | ||| |||||||||| | |||| ||||||||||||| |||| |||||    
16112 catagaccttattaaaccttttatttttaaccgtttgatatttttttaaattggagactgttggatcaagtagagatctattgtagcttgtaatgaacca 16211  T
130 caa 132  Q
    |||    
16212 caa 16214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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