View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859C-Insertion-11 (Length: 849)
Name: NF1859C-Insertion-11
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1859C-Insertion-11 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 8167437 - 8167806
Alignment:
| Q |
8 |
ttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagtttttg |
107 |
Q |
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| T |
8167437 |
ttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagttttccgtttggtgaagtgatgatcattgcagtttttg |
8167536 |
T |
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| Q |
108 |
cattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttgat |
207 |
Q |
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| T |
8167537 |
cattgcataggatagatagttctgtaactttgttgaagagccctagtttgcgttttgagaaggtatcgaggggcttgtttgattgttctgctttcttgat |
8167636 |
T |
|
| Q |
208 |
tttaatggt---tctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctgaagaagccattggatctttcttccaagaggagaaagaggga |
304 |
Q |
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| T |
8167637 |
tttaatggttgatctcttacgtttgttgttgctttttgttgatgtgttgtttccgtttgaagaagccattggatctttcttccaagaggagaaagaggga |
8167736 |
T |
|
| Q |
305 |
agaaagaactcaataaccaaatatgaaagaaaactttgttttgttcccaaaatatggaactgactctttc |
374 |
Q |
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| T |
8167737 |
agaaagaactcaataaccaaatatgaaagaaaactttgttttggtcccaaaatatggaaccgactctttc |
8167806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 450 - 660
Target Start/End: Original strand, 8167886 - 8168097
Alignment:
| Q |
450 |
aaggatctctaatatattttagttgttttcttaagaatatatact-gtaatttttattcaatatgtgtgtcattaatggcaaaattgtataagatcatcg |
548 |
Q |
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| T |
8167886 |
aaggaactctaatatattttagttgttttcttaagaatatatatttgtaatttttattcaatatgcgtgtcattaatggcaaaattgtataagatcatcg |
8167985 |
T |
|
| Q |
549 |
tgttatgattctattatatatatgatcttgctcaaaaataaacaaaatcttttgtcagatatatgannnnnnnccggtgaatatatttagttacatgatc |
648 |
Q |
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|| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
8167986 |
tgatatgattctattatatttgtgatcttgctcaaaaataaacaaaatcttttgtcagatatatgatttttttccggtgaatatatttagctacatgatc |
8168085 |
T |
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| Q |
649 |
aaccatgtacca |
660 |
Q |
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| T |
8168086 |
aaccatgtacca |
8168097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 671 - 831
Target Start/End: Original strand, 8168135 - 8168297
Alignment:
| Q |
671 |
atatggaccgatcaacctttggacaaaaatatgaccatgtctaaaatatttacaaactttnnnnnnnnnnnnngtatacaaacttgcmc-aaatttgaga |
769 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||| ||| |
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| T |
8168135 |
atatggaccgatcaacctttggacaaaaatatgaccatgtctaaaaaatttacaaactttaaaattaaaaaaagtatacaaacttgcacaaaatttaaga |
8168234 |
T |
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| Q |
770 |
gatctaatgtaacctgaaatactattt-cataatctgactaacttattcaatccattttgaaa |
831 |
Q |
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| T |
8168235 |
gatctgatgtaacttgaaatactatttccataatctgactaacttatttaattcatcttgaaa |
8168297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 258
Target Start/End: Original strand, 8999198 - 8999351
Alignment:
| Q |
105 |
ttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttctt |
204 |
Q |
| |
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|||||||||| | ||| |||||| ||| ||||| |||||||| |||| ||||||||||||||||| ||| ||||||| |||| |||| ||||||| |
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| T |
8999198 |
ttgcattgcataaaatgaatagttatgtgactttgttgaagagtcctaatttgcgttttgagaaggtatcatccagcttgttagattcttctactttctt |
8999297 |
T |
|
| Q |
205 |
gattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttcc |
258 |
Q |
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| T |
8999298 |
aatttcattgattctcttaggtgtgtcgttgtgttttgttaatatgatgtttcc |
8999351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 50707504 - 50707789
Alignment:
| Q |
8 |
ttttccctatcgagaaagtgtttaatgacggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagtttttg |
107 |
Q |
| |
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|||||| |||||| ||||||||||||||| |||| | |||||||||| || || | | ||| |||| |||||||||||||||||||| ||| ||||||| |
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| T |
50707504 |
ttttccttatcgaaaaagtgtttaatgacagtgtcatggttagggtatccgcatgcatggagatttttgtttggtgaagtgatgatcagtgcggtttttg |
50707603 |
T |
|
| Q |
108 |
cattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttgat |
207 |
Q |
| |
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||||||| ||||| |||| |||||| ||||| |||||||| ||||||||||| ||||| |||| ||| || ||||||| ||| | | |||||||||||| |
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| T |
50707604 |
cattgcatagaatggataattctgttactttgttgaagagtcctagtttgcgctttgaaaaggtatcacgccgcttgttcgatggctttgctttcttgat |
50707703 |
T |
|
| Q |
208 |
tttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctg-aagaagccattggatctttcttccaagag |
292 |
Q |
| |
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|| ||||||| |||| ||| |||| | | ||||||||| ||||||||||| || | |||||||||||| |||||||||||||||| |
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| T |
50707704 |
ttcaatggttttcttccgtgagttgcttcgttttgttgacgtgttgtttccatccgtaagaagccattgaatctttcttccaagag |
50707789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 50707924 - 50707960
Alignment:
| Q |
456 |
ctctaatatattttagttgttttcttaagaatatata |
492 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
50707924 |
ctctaatatattttagttgttttcttaagaatgtata |
50707960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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