View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1859C-Insertion-4 (Length: 914)
Name: NF1859C-Insertion-4
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1859C-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 714; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 33 - 912
Target Start/End: Original strand, 2746948 - 2747840
Alignment:
Q |
33 |
ttccatttctagatgctttatactttaatctgatgattttaatttccttcttttcttttgcttttatccagttgcaactatttttattccttgccattgt |
132 |
Q |
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T |
2746948 |
ttccatttctagatgctttatactttaatctgatgattttaatttccttcttttcttttgcttttatccagttgcaactatttttattccttgccattgt |
2747047 |
T |
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Q |
133 |
tgtgttttatactggtggtccaagtgttattattcagtaatttggtttctcttgacttggttacatgtcggtcatattcttacgtcagaaatggctaaat |
232 |
Q |
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T |
2747048 |
tgtgttttatattggtggtccaagtgttattattcagtaatttggtttctcttgacttggttacatgtcggtcatattcttacgtcagaaatggctaaat |
2747147 |
T |
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Q |
233 |
tgatggtaattggaattcacaaatctcccagacatgtataatactggtttaaccgaggcacttatacatagataactatctttcatggtttctgatgttt |
332 |
Q |
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T |
2747148 |
tgatggtaattggaattcacaaatctcccagacatgtataagactggtttaaccgaggcagttatacatagataactatctttcatggtttctgatgttt |
2747247 |
T |
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Q |
333 |
atcttctgtacagattgcaatgtgcaagtaatacttaatttctaacgtttttgtttatcccttctaaggtgaatggatgaacagctccgctggacaggct |
432 |
Q |
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T |
2747248 |
atcttctgtacagattgcaatgtgcaagtgatacttaatttctaacgtttttgtttatcccttctaaggtgaatggatgaacagctccgctggacaggct |
2747347 |
T |
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Q |
433 |
ttttcacctcatgttattaccattggacctcaagaggtaattgtattcttccatttcgtcatacgtataggtttcaatccactttgtttatatttagctg |
532 |
Q |
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T |
2747348 |
ttttcacctcatgttatcaccattggacctcaagaggtaattgtattcttccatttcgtcatacgtataggtttcaatccactttgtttatatttagttg |
2747447 |
T |
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Q |
533 |
ttttnnnnnnnnnnnnnntctgaatgcaatgatgttgaggctgcatgtattgaaacagaagattttggtttgtttccaactttctatatcatatttttaa |
632 |
Q |
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T |
2747448 |
ttttaaaaaaaaaaaaaatctgaatgcaatgatgttgaggctgcatgtattgaaacagaagattttggtttgtttccaactttctatatcatatttttaa |
2747547 |
T |
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Q |
633 |
atcataataccccattggtctaatgataccaacatcattgttgacattgacgtaaggaaacagctaaatattttcacaacc-aagttgctacattatgac |
731 |
Q |
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T |
2747548 |
atcataataccccattggtctaatgataccaacatcattgttgacattgacgtaaggaaacagctaaatattttcacaaccaaagttgctacattatgac |
2747647 |
T |
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Q |
732 |
ttgaaagaagttgagtacttcttatttaac-aaaaagcctaaga--tgtgc-atagagagattttt--gggggaaaaaacatgcgcaagcctcatggata |
825 |
Q |
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T |
2747648 |
ttgaaagaagttgagtacttcttatttaacaaaaaagcctaagaatattgcaatagagagattttttgggggaaaaaaacatgcgcaagcctcatgggta |
2747747 |
T |
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Q |
826 |
gtttga-gagatgtaattacgttcataatgtttaattagatga-tttactta--ccataatgacgtgga-gggttatgtaagt-gaaattgcg |
912 |
Q |
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T |
2747748 |
gtttgataagatgtaattacgttcataatgtttaattagatgattttacttaaccaataatgacgtggaggggttatgtaagtggaaattgcg |
2747840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 789 - 870
Target Start/End: Original strand, 2747856 - 2747939
Alignment:
Q |
789 |
tttttgggggaaaa-aacatgcgcaagcctcatggatagtttga-gagatgtaattacgttcataatgtttaattagatgattt |
870 |
Q |
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T |
2747856 |
tttttgggggaaaaaaacatgcgcaagcctcatggatagtttgataagatgtaattacgttcagaacgtttgattagatgattt |
2747939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 2752181 - 2752148
Alignment:
Q |
8 |
atttttatgtcaaggttggttactcttccatttc |
41 |
Q |
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T |
2752181 |
atttttatgtcaaggttggttactctttcatttc |
2752148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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