View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1859C-Insertion-7 (Length: 867)

Name: NF1859C-Insertion-7
Description: NF1859C
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1859C-Insertion-7
NF1859C-Insertion-7
[»] chr5 (1 HSPs)
chr5 (8-866)||(2751324-2752181)


Alignment Details
Target: chr5 (Bit Score: 805; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 8 - 866
Target Start/End: Complemental strand, 2752181 - 2751324
Alignment:
Q  8 atttttatgtcaaggttggttactctttcatttcatgtgttgtttgcttcatcttataacttcaattttgctcatctctaatccacatgcaggatgctaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2752181 atttttatgtcaaggttggttactctttcatttcatgtgttgtttgcttcatcttataacttcaattttgctcatctctaatccacatgcaggatgctaa 2752082  T
Q  108 gggaggtattgctaatctcgcaacttataagggaaaagttctgctgattgtcaatgttgcttctcaatggtatctttaattttgtgcaattctttttgtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2752081 gggaggtattgctaatctcgcaacttataagggaaaagttctgctgattgtcaatgttgcttctcaatggtatctttaattttgtgcaattctttttgtt 2751982  T
Q  208 catcacattaccattgtttcaaatgttcaaaaaatatttacaattctagtttgttgtttgggattttgagacagcggcttaaccgactccaactatgctg 307  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2751981 catcacattaccattgtttcaattgttcaaaaaatatttacaattctagtttgttgtttgggattttgagacagcggcttaaccgactccaactatgctg 2751882  T
Q  308 agttgaatcaactatatgacaagtataaagaccaaggtttgtaatttattaatttacactcttgtatattgttaattttttctcatttcaaactgtaact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2751881 agttgaatcaactatatgacaagtataaagaccaaggtttgtaatttattaatttacactcttgtatattgttaattttttctcatttcaaactgtaact 2751782  T
Q  408 atcatatcctttgcataagcatagatatatgaagaaataggatggaatttcttggaaacttgtactgacatcttgtgatgcattactgagannnnnnnnn 507  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  2751781 atcataacctttgcataagcatagatatatgaagaaataggatggaatttcttggaaacttgtactgacatcttgtgatgcattactgaga--ttttttt 2751684  T
Q  508 ngttcctttacgaaattgtttcattgatatgtatgaatggattggaaattttgaataggcttcgagattttggcatttccatgtaatcaatttcgcgacc 607  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2751683 tgttcctttacgaaattgtttcattgatacgtatgaatggattggaaattttgaataggcttcgagattttggcatttccatgtaatcaatttcgcgacc 2751584  T
Q  608 aagagcccgaaactagtgataaaattgtggagtatgtttgcactcgcttcggatcaaaatttcccatctttggtaaggtaggtctacttacaagtcttct 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2751583 aagagcccgaaactagtgataaaattgtggagtatgtttgcactcgcttcggatcaaaatttcccatctttggtaaggtaggtctacttacaagtcttct 2751484  T
Q  708 ttgaaagtgcattaatcataatccaaaaagtaggagggtatcccgcaactagtattagcatttgttttgttctgcgatgaattttatggaattgtgatgg 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2751483 ttgaaagtgcattaatcataatccaaaaagtaggagggtatcccgcaactagtattagcatttgttttgttctgcgatgaattttatggaattgtgatgg 2751384  T
Q  808 aatatcgcgtctggac-aaaatttccctgttctatatatgtgtgtgtttggacgtggtat 866  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2751383 aatatcgcgtctggacaaaaatttccctgttctatatatgtgtgtgtttggacgtggtat 2751324  T

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